Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0006876

Physical Location & Seq

Genomic Coordinates Forward (+)

36952264 .. 36955629

Gene Structure 3366 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g49260.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1287 bp

ATGGCCGGCACCGGAATACGGCAGGTCAAACTGGAGCGAGAGTGCGAACTCAGAATCGAAGTCGGCAACGACGCACCTCTCAAGCTCCGCGTTCTCAACGGCACCGCCGAGATCTTCGGCACCGAGCTCCCCCCTGAAATCTGGCTCACTTTTCTTCCCAGGCTCAAATTCGCTGTGTTCACTTGGTATGGCGCCACAATCGAGATGGACGGCCCCACCGAAACGGATTACACCGCTGACGAGACGCCGAATATCAGCTATGTGAATGTGCATGCCGTGTTGGATGCGCGGCGGAACCGTGCGAAAACGCTGTCGTCTGATGATCCTGATTCTCCTCACGCTCAGGGACCGAGGGTGATGGTTGTGGGACCTACGGATTCCGGGAAGAGTACGTTGGCGAAAATGCTGCTGAGTTGGGCAGCTAAGCAAGGATGGAAACCTACTTTTGTTGATTTGGATATCGGACAAGGAGCTATAACAATTCCCGGATGCATTGCGGCTACTCCTATTGAAATGCCTATTGATCCCGTGGAAGGGATTCCCCTTGACATGCCCCTTGTGTATTTCTATGGGCACACTACTCCCACGACCAATGTGGATTTGTACAGAGTGCTTGTCAAGGAGCTTTCTCAAATGGTAGAGAAACAACTTGCTGGTACTGCTGAATCTCAAGCTGCTGGACTGGTAATCAACACCATGGGATGGATTGAGGGTGCTGGCTATGAGTTGCTTCTTCATGCAATTGACACATTCAATGCCAATGTTGTCTTGGTTTTGGGTCAGGAAAAGCTTTGCAGCATGCTCAGAGATGTACTAAAGAACAAGCCCAATGTGGATGTTGTTAAACTTCAAAAATCAGGGGGAGTTGTATCCAGGAATTTAAAATTCCGTCAAAAATCCAGGAGTAATAGGATAAGGGAATACTTTTATGGCCTTGCGAATGATCTCAGCCCACATTCTAATACTGCAAATTTCAGCGATTTATCTGTCTTTCGAATCGGTGGTGGCCCACAGGCCCCTCGTTCAGCTTTGCCAATTGGTGCCGAGCCTGCTGCTGATCCTACAAGAGTGGTTCCTGTAAATATTAACCGTGATTTGCTCCATATGGTTCTCGCTATTTCATATGCCAAGGAGCCTGATGAAATTATCTCTAGTAATGTTGCTGGGTTTGTCCATGTCACAGAAGTCAATGTTGAAAGGAAGACAATTACCTACCTTGCACCAGCCGCTGGTGAACTTCCAGGCAAATTTTTGATACTAGGGTCCTTGACATGGCTTGAAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000394 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006378 GO:0006379 GO:0006388 GO:0006396 GO:0006397 GO:0006399 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008033 GO:0008150 GO:0008152 GO:0008380 GO:0009791 GO:0009908 GO:0009987 GO:0010228 GO:0010467 GO:0016070 GO:0016071 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019205 GO:0022414 GO:0031123 GO:0031124 GO:0032501 GO:0032502 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043631 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0051731 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090567 GO:0099402 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

CLP1_N CLP1_P Clp1

Protein Analysis

429

Amino Acids

46.73

Weight (kDa)

5.63

Isoelectric Point (pI)

38.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CLP1_N	PF16573	10 - 101	2.4e-30	N-terminal beta-sandwich domain of polyadenylation factor
CLP1_P	PF16575	123 - 311	5.9e-71	mRNA cleavage and polyadenylation factor CLP1 P-loop
Clp1	PF06807	316 - 400	5.1e-23	Pre-mRNA cleavage complex II protein Clp1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006876)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04680 AT3G04680 AT3G04680
fragaria_vesca	FvH4_6g49260 FvH4_6g49260
malus_domestica	MD09G1046200.v1.1 MD09G1046500.v1.1 MD17G1047000.v1.1
prunus_persica	Prupe.3G272100_v2.0.a1
pyrus_communis	pycom09g03810 pycom09g04270 pycom111g03580 pycom111g03600 pycom111g03650 pycom17g04190
rosa_chinensis	RchiOBHm_Chr2g0169161
rosa_laevigata	RLG00000021838
rosa_multiflora	Rmu_ssc0000440.1_g000003
rosa_roxburghii	Rroxscaffold_2G00082380
rosa_rugosa	Rorug02G0537700 Rorug02G0537800
rosa_samantha	Rh2AG609300 Rh2BG622300 Rh2CG591000 Rh2DG633000
rosa_wichuraiana	Rw2G050540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	13
AccB1I	GGYRCC	5 cut(s)	8, 101, 119, 191, 1040
AccB7I	CCANNNNNTGG	2 cut(s)	702, 1229
AccII	CGCG	2 cut(s)	90, 289
AciI	CCGC	7 cut(s)	88, 105, 234, 289, 292, 497, 1227
AclWI	GGATC	3 cut(s)	317, 518, 1052
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	5 cut(s)	167, 877, 884, 970, 1247
AcyI	GRCGYC	2 cut(s)	192, 245
AfaI	GTAC	4 cut(s)	391, 605, 658, 813
AfiI	CCNNNNNNNGG	6 cut(s)	18, 533, 534, 702, 1229, 1272
AgsI	TTSAA	5 cut(s)	512, 754, 851, 1196, 1280
AjnI	CCWGG	4 cut(s)	158, 872, 899, 1240
AjuI	GAANNNNNNNTTGG	2 cut(s)	377, 409
AluBI	AGCT	9 cut(s)	85, 127, 258, 422, 473, 625, 674, 790, 1028
AluI	AGCT	9 cut(s)	85, 127, 258, 422, 473, 625, 674, 790, 1028
Alw21I	GWGCWC	1 cut(s)	129
Alw26I	GTCTC	1 cut(s)	236
AlwI	GGATC	3 cut(s)	317, 518, 1052
AlwNI	CAGNNNCTG	1 cut(s)	1229
AoxI	GGCC	5 cut(s)	3, 211, 931, 1006, 1014
ApeKI	GCWGC	5 cut(s)	406, 419, 674, 795, 1052
ApoI	RAATTY	5 cut(s)	167, 877, 884, 970, 1247
ArsI	GACNNNNNNTTYG	2 cut(s)	296, 328
Asp700I	GAANNNNTTC	1 cut(s)	537
AspLEI	GCGC	2 cut(s)	194, 289
AspS9I	GGNCC	6 cut(s)	212, 347, 368, 1007, 1015, 1263
AsuC2I	CCSGG	2 cut(s)	382, 486
AsuHPI	GGTGA	2 cut(s)	367, 1244
AsuII	TTCGAA	1 cut(s)	994
AvaII	GGWCC	3 cut(s)	347, 368, 1263
BaeGI	GKGCMC	1 cut(s)	576
BaeI	ACNNNNGTAYC	2 cut(s)	1247, 1280
BanI	GGYRCC	5 cut(s)	8, 101, 119, 191, 1040
BanII	GRGCYC	1 cut(s)	129
BbsI	GAAGAC	1 cut(s)	1208
Bbv12I	GWGCWC	1 cut(s)	129
BbvI	GCAGC	5 cut(s)	393, 431, 661, 807, 1039
BccI	CCATC	4 cut(s)	199, 352, 426, 696
BceAI	ACGGC	4 cut(s)	35, 115, 226, 260
BcgI	CGANNNNNNTGC	4 cut(s)	388, 422, 1034, 1068
BciT130I	CCWGG	4 cut(s)	160, 874, 901, 1242
BciVI	GTATCC	1 cut(s)	880
BcnI	CCSGG	2 cut(s)	382, 486
BcoDI	GTCTC	1 cut(s)	236
BfaI	CTAG	2 cut(s)	1152, 1259
BfoI	RGCGCY	1 cut(s)	195
BfuAI	ACCTGC	1 cut(s)	13
BfuI	GTATCC	1 cut(s)	880
BglII	AGATCT	1 cut(s)	111
BisI	GCNGC	8 cut(s)	290, 407, 420, 498, 675, 796, 1053, 1227
BlpI	GCTNAGC	1 cut(s)	423
BlsI	GCNGC	8 cut(s)	291, 408, 421, 499, 676, 797, 1054, 1228
Bme1390I	CCNGG	6 cut(s)	160, 382, 486, 874, 901, 1242
Bme18I	GGWCC	3 cut(s)	347, 368, 1263
BmgT120I	GGNCC	6 cut(s)	212, 347, 368, 1007, 1015, 1263
BmrFI	CCNGG	6 cut(s)	160, 382, 486, 874, 901, 1242
BmsI	GCATC	2 cut(s)	274, 479
BpiI	GAAGAC	1 cut(s)	1208
BpmI	CTGGAG	1 cut(s)	53
Bpu10I	CCTNAGC	1 cut(s)	342
Bpu1102I	GCTNAGC	1 cut(s)	423
Bpu14I	TTCGAA	1 cut(s)	994
BpuEI	CTTGAG	2 cut(s)	65, 654
BpuMI	CCSGG	2 cut(s)	382, 486
BsaHI	GRCGYC	2 cut(s)	192, 245
BsaJI	CCNNGG	5 cut(s)	158, 350, 528, 696, 1128
BsaWI	WCCGGW	1 cut(s)	11
BsaXI	ACNNNNNCTCC	2 cut(s)	26, 56
Bsc4I	CCNNNNNNNGG	6 cut(s)	18, 533, 534, 702, 1229, 1272
Bse118I	RCCGGY	1 cut(s)	5
Bse1I	ACTGG	2 cut(s)	36, 687
Bse3DI	GCAATG	1 cut(s)	492
BseBI	CCWGG	4 cut(s)	160, 874, 901, 1242
BseDI	CCNNGG	5 cut(s)	158, 350, 528, 696, 1128
BseGI	GGATG	5 cut(s)	289, 437, 494, 707, 841
BseLI	CCNNNNNNNGG	6 cut(s)	18, 533, 534, 702, 1229, 1272
BseMI	GCAATG	1 cut(s)	492
BseMII	CTCAG	5 cut(s)	64, 356, 401, 817, 961
BseNI	ACTGG	2 cut(s)	36, 687
BseRI	GAGGAG	1 cut(s)	324
BseSI	GKGCMC	1 cut(s)	576
BseXI	GCAGC	5 cut(s)	393, 431, 661, 807, 1039
BseYI	CCCAGC	1 cut(s)	1163
Bsh1236I	CGCG	2 cut(s)	90, 289
BshFI	GGCC	5 cut(s)	5, 213, 933, 1008, 1016
BshNI	GGYRCC	5 cut(s)	8, 101, 119, 191, 1040
BsiHKAI	GWGCWC	1 cut(s)	129
BsiSI	CCGG	4 cut(s)	6, 12, 381, 486
BslFI	GGGAC	2 cut(s)	360, 381
BslI	CCNNNNNNNGG	6 cut(s)	18, 533, 534, 702, 1229, 1272
BsmAI	GTCTC	1 cut(s)	236
BsmBI	CGTCTC	1 cut(s)	236
BsmFI	GGGAC	2 cut(s)	360, 381
BsnI	GGCC	5 cut(s)	5, 213, 933, 1008, 1016
Bsp119I	TTCGAA	1 cut(s)	994
Bsp1286I	GDGCHC	2 cut(s)	129, 576
Bsp1407I	TGTACA	1 cut(s)	603
Bsp143I	GATC	5 cut(s)	111, 322, 523, 943, 1057
Bsp1720I	GCTNAGC	1 cut(s)	423
Bsp19I	CCATGG	1 cut(s)	696
BspACI	CCGC	7 cut(s)	88, 105, 234, 289, 292, 497, 1227
BspANI	GGCC	5 cut(s)	5, 213, 933, 1008, 1016
BspCNI	CTCAG	5 cut(s)	63, 355, 402, 816, 960
BspFNI	CGCG	2 cut(s)	90, 289
BspMI	ACCTGC	1 cut(s)	13
BspPI	GGATC	3 cut(s)	317, 518, 1052
BspT104I	TTCGAA	1 cut(s)	994
BspT107I	GGYRCC	5 cut(s)	8, 101, 119, 191, 1040
BsrDI	GCAATG	1 cut(s)	492
BsrFI	RCCGGY	1 cut(s)	5
BsrGI	TGTACA	1 cut(s)	603
BsrI	ACTGG	2 cut(s)	36, 687
BssAI	RCCGGY	1 cut(s)	5
BssECI	CCNNGG	5 cut(s)	158, 350, 528, 696, 1128
BssMI	GATC	5 cut(s)	111, 322, 523, 943, 1057
BssNI	GRCGYC	2 cut(s)	192, 245
BssT1I	CCWWGG	2 cut(s)	696, 1128
Bst2UI	CCWGG	4 cut(s)	160, 874, 901, 1242
Bst4CI	ACNGT	2 cut(s)	299, 1091
Bst6I	CTCTTC	1 cut(s)	380
BstACI	GRCGYC	2 cut(s)	192, 245
BstAUI	TGTACA	1 cut(s)	603
BstBI	TTCGAA	1 cut(s)	994
BstC8I	GCNNGC	5 cut(s)	7, 273, 718, 800, 1050
BstDEI	CTNAG	6 cut(s)	50, 342, 410, 423, 803, 947
BstDSI	CCRYGG	2 cut(s)	528, 696
BstF5I	GGATG	5 cut(s)	289, 437, 494, 707, 841
BstFNI	CGCG	2 cut(s)	90, 289
BstH2I	RGCGCY	1 cut(s)	195
BstHHI	GCGC	2 cut(s)	194, 289
BstKTI	GATC	5 cut(s)	114, 325, 526, 946, 1060
BstMAI	GTCTC	1 cut(s)	236
BstMBI	GATC	5 cut(s)	111, 322, 523, 943, 1057
BstMWI	GCNNNNNNNGC	3 cut(s)	659, 1049, 1226
BstNI	CCWGG	4 cut(s)	160, 874, 901, 1242
BstNSI	RCATGY	3 cut(s)	275, 553, 802
BstSCI	CCNGG	6 cut(s)	158, 380, 484, 872, 899, 1240
BstSLI	GKGCMC	1 cut(s)	576
BstUI	CGCG	2 cut(s)	90, 289
BstV1I	GCAGC	5 cut(s)	393, 431, 661, 807, 1039
BstV2I	GAAGAC	1 cut(s)	1208
BstX2I	RGATCY	1 cut(s)	111
BstYI	RGATCY	1 cut(s)	111
BsuI	GTATCC	1 cut(s)	880
BsuRI	GGCC	5 cut(s)	5, 213, 933, 1008, 1016
BtgI	CCRYGG	2 cut(s)	528, 696
BtsCI	GGATG	5 cut(s)	289, 437, 494, 707, 841
BveI	ACCTGC	1 cut(s)	13
Cac8I	GCNNGC	5 cut(s)	7, 273, 718, 800, 1050
CaiI	CAGNNNCTG	1 cut(s)	1229
CfoI	GCGC	2 cut(s)	194, 289
Cfr10I	RCCGGY	1 cut(s)	5
Cfr13I	GGNCC	6 cut(s)	212, 347, 368, 1007, 1015, 1263
CseI	GACGC	2 cut(s)	80, 253
Csp6I	GTAC	4 cut(s)	390, 604, 657, 812
CviAII	CATG	8 cut(s)	272, 550, 697, 737, 799, 1175, 1272, 1284
CviQI	GTAC	4 cut(s)	390, 604, 657, 812
DdeI	CTNAG	6 cut(s)	50, 342, 410, 423, 803, 947
DinI	GGCGCC	1 cut(s)	193
DpnI	GATC	5 cut(s)	113, 324, 525, 945, 1059
DpnII	GATC	5 cut(s)	111, 322, 523, 943, 1057
DraI	TTTAAA	1 cut(s)	882
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	380
EarI	CTCTTC	1 cut(s)	380
EciI	GGCGGA	1 cut(s)	307
Ecl136II	GAGCTC	1 cut(s)	127
Eco130I	CCWWGG	2 cut(s)	696, 1128
Eco24I	GRGCYC	1 cut(s)	129
Eco32I	GATATC	1 cut(s)	460
Eco47I	GGWCC	3 cut(s)	347, 368, 1263
Eco53kI	GAGCTC	1 cut(s)	127
EcoICRI	GAGCTC	1 cut(s)	127
EcoO109I	RGGNCCY	3 cut(s)	368, 1015, 1263
EcoRII	CCWGG	4 cut(s)	158, 872, 899, 1240
EcoRV	GATATC	1 cut(s)	460
EcoT14I	CCWWGG	2 cut(s)	696, 1128
EcoT22I	ATGCAT	1 cut(s)	494
EcoT38I	GRGCYC	1 cut(s)	129
EgeI	GGCGCC	1 cut(s)	193
EheI	GGCGCC	1 cut(s)	193
ErhI	CCWWGG	2 cut(s)	696, 1128
Esp3I	CGTCTC	1 cut(s)	236
FaeI	CATG	8 cut(s)	275, 553, 700, 740, 802, 1178, 1275, 1287
FaqI	GGGAC	2 cut(s)	360, 381
FatI	CATG	8 cut(s)	271, 549, 696, 736, 798, 1174, 1271, 1283
FauNDI	CATATG	2 cut(s)	1104, 1123
Fnu4HI	GCNGC	8 cut(s)	290, 407, 420, 498, 675, 796, 1053, 1227
FokI	GGATG	5 cut(s)	296, 444, 501, 714, 848
FriOI	GRGCYC	1 cut(s)	129
Fsp4HI	GCNGC	8 cut(s)	290, 407, 420, 498, 675, 796, 1053, 1227
FspBI	CTAG	2 cut(s)	1152, 1259
GlaI	GCGC	2 cut(s)	193, 288
GluI	GCNGC	8 cut(s)	290, 407, 420, 498, 675, 796, 1053, 1227
GsaI	CCCAGC	1 cut(s)	1167
GsuI	CTGGAG	1 cut(s)	53
HaeII	RGCGCY	1 cut(s)	195
HaeIII	GGCC	5 cut(s)	5, 213, 933, 1008, 1016
HapII	CCGG	4 cut(s)	6, 12, 381, 486
HgaI	GACGC	2 cut(s)	80, 253
HhaI	GCGC	2 cut(s)	194, 289
Hin1I	GRCGYC	2 cut(s)	192, 245
Hin1II	CATG	8 cut(s)	275, 553, 700, 740, 802, 1178, 1275, 1287
Hin6I	GCGC	2 cut(s)	192, 287
HinP1I	GCGC	2 cut(s)	192, 287
HindIII	AAGCTT	1 cut(s)	788
HinfI	GANTC	6 cut(s)	54, 329, 377, 538, 665, 996
HpaII	CCGG	4 cut(s)	6, 12, 381, 486
HphI	GGTGA	2 cut(s)	367, 1244
Hpy166II	GTNNAC	2 cut(s)	180, 1235
Hpy188I	TCNGA	4 cut(s)	53, 319, 464, 806
Hpy188III	TCNNGA	3 cut(s)	202, 326, 782
Hpy8I	GTNNAC	2 cut(s)	180, 1235
Hpy99I	CGWCG	1 cut(s)	74
HpyAV	CCTTC	1 cut(s)	527
HpyCH4III	ACNGT	2 cut(s)	299, 1091
HpyCH4IV	ACGT	1 cut(s)	392
HpyCH4V	TGCA	6 cut(s)	271, 492, 740, 795, 968, 1220
HpyF10VI	GCNNNNNNNGC	3 cut(s)	659, 1049, 1226
HpyF3I	CTNAG	6 cut(s)	50, 342, 410, 423, 803, 947
HpySE526I	ACGT	1 cut(s)	392
Hsp92I	GRCGYC	2 cut(s)	192, 245
Hsp92II	CATG	8 cut(s)	275, 553, 700, 740, 802, 1178, 1275, 1287
HspAI	GCGC	2 cut(s)	192, 287
KasI	GGCGCC	1 cut(s)	191
KroI	GCCGGC	1 cut(s)	5
KroNI	GCCGGC	1 cut(s)	7
Kzo9I	GATC	5 cut(s)	111, 322, 523, 943, 1057
LmnI	GCTCC	7 cut(s)	34, 90, 132, 470, 622, 1104, 1132
Lsp1109I	GCAGC	5 cut(s)	393, 431, 661, 807, 1039
LweI	GCATC	2 cut(s)	274, 479
MaeI	CTAG	2 cut(s)	1152, 1259
MaeII	ACGT	1 cut(s)	392
MaeIII	GTNAC	1 cut(s)	1177
MalI	GATC	5 cut(s)	113, 324, 525, 945, 1059
MboI	GATC	5 cut(s)	111, 322, 523, 943, 1057
MboII	GAAGA	5 cut(s)	106, 146, 397, 725, 1213
MfeI	CAATTG	2 cut(s)	741, 1035
MflI	RGATCY	1 cut(s)	111
MhlI	GDGCHC	2 cut(s)	129, 576
Mly113I	GGCGCC	1 cut(s)	192
MmeI	TCCRAC	1 cut(s)	261
MnlI	CCTC	5 cut(s)	87, 345, 345, 703, 1029
Mph1103I	ATGCAT	1 cut(s)	494
MroNI	GCCGGC	1 cut(s)	5
MroXI	GAANNNNTTC	1 cut(s)	537
MseI	TTAA	3 cut(s)	843, 881, 1086
MspA1I	CMGCKG	2 cut(s)	236, 1229
MspI	CCGG	4 cut(s)	6, 12, 381, 486
MspR9I	CCNGG	6 cut(s)	160, 382, 486, 874, 901, 1242
MunI	CAATTG	2 cut(s)	741, 1035
MvaI	CCWGG	4 cut(s)	160, 874, 901, 1242
MvnI	CGCG	2 cut(s)	90, 289
MwoI	GCNNNNNNNGC	3 cut(s)	659, 1049, 1226
NaeI	GCCGGC	1 cut(s)	7
NarI	GGCGCC	1 cut(s)	192
NciI	CCSGG	2 cut(s)	382, 486
NcoI	CCATGG	1 cut(s)	696
NdeI	CATATG	2 cut(s)	1104, 1123
NdeII	GATC	5 cut(s)	111, 322, 523, 943, 1057
NgoMIV	GCCGGC	1 cut(s)	5
NlaIII	CATG	8 cut(s)	275, 553, 700, 740, 802, 1178, 1275, 1287
NmeAIII	GCCGAG	2 cut(s)	133, 1069
NmuCI	GTSAC	1 cut(s)	1177
NsiI	ATGCAT	1 cut(s)	494
NspI	RCATGY	3 cut(s)	275, 553, 802
NspV	TTCGAA	1 cut(s)	994
PaeI	GCATGC	2 cut(s)	275, 802
PcsI	WCGNNNNNNNCGW	2 cut(s)	105, 216
PdiI	GCCGGC	1 cut(s)	7
PdmI	GAANNNNTTC	1 cut(s)	537
PfeI	GAWTC	6 cut(s)	54, 329, 377, 538, 665, 996
PflMI	CCANNNNNTGG	2 cut(s)	702, 1229
PfoI	TCCNGGA	4 cut(s)	380, 484, 872, 899
PkrI	GCNGC	8 cut(s)	291, 408, 421, 499, 676, 797, 1054, 1228
PluTI	GGCGCC	1 cut(s)	195
PpuMI	RGGWCCY	2 cut(s)	368, 1263
Psp124BI	GAGCTC	1 cut(s)	129
Psp5II	RGGWCCY	2 cut(s)	368, 1263
Psp6I	CCWGG	4 cut(s)	158, 872, 899, 1240
PspFI	CCCAGC	1 cut(s)	1163
PspGI	CCWGG	4 cut(s)	158, 872, 899, 1240
PspPI	GGNCC	6 cut(s)	212, 347, 368, 1007, 1015, 1263
PspPPI	RGGWCCY	2 cut(s)	368, 1263
PstNI	CAGNNNCTG	1 cut(s)	1229
PsuI	RGATCY	1 cut(s)	111
RsaI	GTAC	4 cut(s)	391, 605, 658, 813
RsaNI	GTAC	4 cut(s)	390, 604, 657, 812
SacI	GAGCTC	1 cut(s)	129
SaqAI	TTAA	3 cut(s)	843, 881, 1086
SatI	GCNGC	8 cut(s)	290, 407, 420, 498, 675, 796, 1053, 1227
Sau3AI	GATC	5 cut(s)	111, 322, 523, 943, 1057
Sau96I	GGNCC	6 cut(s)	212, 347, 368, 1007, 1015, 1263
ScrFI	CCNGG	6 cut(s)	160, 382, 486, 874, 901, 1242
SduI	GDGCHC	2 cut(s)	129, 576
SfaNI	GCATC	2 cut(s)	274, 479
SfoI	GGCGCC	1 cut(s)	193
SfuI	TTCGAA	1 cut(s)	994
SinI	GGWCC	3 cut(s)	347, 368, 1263
SmlI	CTYRAG	2 cut(s)	80, 669
SmoI	CTYRAG	2 cut(s)	80, 669
SphI	GCATGC	2 cut(s)	275, 802
SsiI	CCGC	7 cut(s)	88, 105, 234, 289, 292, 497, 1227
SspDI	GGCGCC	1 cut(s)	191
SspI	AATATT	1 cut(s)	1084
SspMI	CTAG	2 cut(s)	1152, 1259
SstI	GAGCTC	1 cut(s)	129
StyD4I	CCNGG	6 cut(s)	158, 380, 484, 872, 899, 1240
StyI	CCWWGG	2 cut(s)	696, 1128
TaaI	ACNGT	2 cut(s)	299, 1091
TaiI	ACGT	1 cut(s)	395
TaqI	TCGA	3 cut(s)	57, 201, 994
TaqII	GACCGA	1 cut(s)	364
TatI	WGTACW	2 cut(s)	603, 811
TauI	GCSGC	3 cut(s)	292, 500, 1229
TfiI	GAWTC	6 cut(s)	54, 329, 377, 538, 665, 996
Tru1I	TTAA	3 cut(s)	843, 881, 1086
Tru9I	TTAA	3 cut(s)	843, 881, 1086
TseFI	GTSAC	1 cut(s)	1177
TseI	GCWGC	5 cut(s)	406, 419, 674, 795, 1052
Tsp45I	GTSAC	1 cut(s)	1177
TspDTI	ATGAA	3 cut(s)	725, 1110, 1155
TspGWI	ACGGA	3 cut(s)	239, 389, 878
Van91I	CCANNNNNTGG	2 cut(s)	702, 1229
VpaK11BI	GGWCC	3 cut(s)	347, 368, 1263
XapI	RAATTY	5 cut(s)	167, 877, 884, 970, 1247
XceI	RCATGY	3 cut(s)	275, 553, 802
XcmI	CCANNNNNNNNNTGG	3 cut(s)	202, 592, 766
XmnI	GAANNNNTTC	1 cut(s)	537
XspI	CTAG	2 cut(s)	1152, 1259
Zsp2I	ATGCAT	1 cut(s)	494

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.