Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0006876

Physical Location & Seq

Genomic Coordinates Reverse (-)

3046554 .. 3049452

Gene Structure 2899 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1046500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1221 bp

ATGGCGCACGGCGGCGGACCAAGGCAGGTGAAACTGGACCGAGAGAGCGAGCTCAGAATCGAAGTCGGCTACGACGCCCCTCTCAAGCTCCGCCTGCTCAGCGGCACCGCCGGCACCGAGCTCCCCCCTGATTTCTGGCTCACCTTCCCGCCCAGTCAAATTTGCTCAACAATTGAGATGGAGGGCAGTACGGAAACCGAGTACACGGCTGATGAGACTCCAAATATCAGCTATGTGAATGTGCACGCCGTACTGGAAGAACGGAGACACCGCGCCAAACCCTTGCCGCCCGATGACCCCAATTCTCAGATTTCTGGGAAAAGTACCTTGTCGAAAATGCTTCTTAGTTGGGCAGCTAAGAAGGGATGGAAACCTACTTTCGTCGACTTGGATATTGGACAAGGAGCTATAACAATTCCGGGATGTATTGCCGCTACTCCTATTGAAATGCCTATTGATCCGGTTGAAGGAATTCCTCTTGATATACCTCTCGTTTATTTCTATGGGCACACAACTCCTAGTAATAATGTAGATTTATACAAAGTGCTTGTGAAGGAGCTTGCTCAAGTGGTAGAAAGACAACTTTCTGGGAATGCTGAATCTCGAGCTTCTGGAATGGTGATCAATACCATGGGATGGATAGAAGGTCAAGGCTACGAGTTGCTTCTTCATGCAATTGATACATTCAATGCCAACGTTGTCTTAGTTCTGGGCCAGGAAAAACTTTGGAGCATGATCAGAAATGTACTAAAGAACAAGCCCGGTGTGGACGTTGTAAAACTTCGAAAATCTGGGGGTGTTGTATCCAGGAATGCCAAATTCCGTCAAAAATCCAGGAGTCATAGGATAAGGGAGTATTTCTATGGCCTTGCAAATGATCTCAGCCCACATTCTAATATCGCGAATTTTAGTGAGTTTTCTGTCTTTCGGATTGGTGGCGGGCCACAGGCCCCACGTTCGGCTTTGCCAATTGGTGCAGAGCCTGCTGCAGACCCTACAAGAATGGCGCCTGTGAATATTAACCGGGATTTGCTGCATACCGTTCTTGCTGTTTCATTTGCCAAGGAGCCTGATCAAATTATTTCTAGTAATGTTGCTGGGTTTGTCTTTGTCACACACGTCGACATTCAGAGGAAGACAATTACGTACCTTGCACCATCGGTGGGGGAGCTTCCAAGCAAGTATTTGATTGCAGGAACCGTGACATGGCTTGAAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000394 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006378 GO:0006379 GO:0006388 GO:0006396 GO:0006397 GO:0006399 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008033 GO:0008150 GO:0008152 GO:0008380 GO:0009791 GO:0009908 GO:0009987 GO:0010228 GO:0010467 GO:0016070 GO:0016071 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019205 GO:0022414 GO:0031123 GO:0031124 GO:0032501 GO:0032502 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043631 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0051731 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090567 GO:0099402 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

CLP1_N CLP1_P Clp1

Protein Analysis

407

Amino Acids

44.55

Weight (kDa)

6.52

Isoelectric Point (pI)

40.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CLP1_N	PF16573	11 - 92	1.3e-15	N-terminal beta-sandwich domain of polyadenylation factor
CLP1_P	PF16575	105 - 289	1.9e-69	mRNA cleavage and polyadenylation factor CLP1 P-loop
Clp1	PF06807	294 - 405	6.6e-33	Pre-mRNA cleavage complex II protein Clp1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006876)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04680 AT3G04680 AT3G04680
fragaria_vesca	FvH4_6g49260 FvH4_6g49260
malus_domestica	MD09G1046200.v1.1 MD09G1046500.v1.1 MD17G1047000.v1.1
prunus_persica	Prupe.3G272100_v2.0.a1
pyrus_communis	pycom09g03810 pycom09g04270 pycom111g03580 pycom111g03600 pycom111g03650 pycom17g04190
rosa_chinensis	RchiOBHm_Chr2g0169161
rosa_laevigata	RLG00000021838
rosa_multiflora	Rmu_ssc0000440.1_g000003
rosa_roxburghii	Rroxscaffold_2G00082380
rosa_rugosa	Rorug02G0537700 Rorug02G0537800
rosa_samantha	Rh2AG609300 Rh2BG622300 Rh2CG591000 Rh2DG633000
rosa_wichuraiana	Rw2G050540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	16
Acc36I	ACCTGC	1 cut(s)	16
AccB1I	GGYRCC	3 cut(s)	104, 113, 1006
AccB7I	CCANNNNNTGG	1 cut(s)	636
AccI	GTMKAC	2 cut(s)	384, 1122
AccII	CGCG	2 cut(s)	273, 902
AclI	AACGTT	1 cut(s)	696
AclWI	GGATC	1 cut(s)	452
AcsI	RAATTY	4 cut(s)	159, 471, 818, 904
AcyI	GRCGYC	2 cut(s)	75, 1007
AfaI	GTAC	6 cut(s)	190, 203, 252, 325, 747, 1148
AfiI	CCNNNNNNNGG	5 cut(s)	467, 636, 958, 1163, 1206
AflIII	ACRYGT	1 cut(s)	1117
AgsI	TTSAA	4 cut(s)	446, 467, 688, 1214
AjiI	CACGTC	1 cut(s)	1120
AjnI	CCWGG	3 cut(s)	714, 806, 833
AluBI	AGCT	9 cut(s)	52, 88, 121, 231, 356, 407, 559, 608, 1171
AluI	AGCT	9 cut(s)	52, 88, 121, 231, 356, 407, 559, 608, 1171
Alw21I	GWGCWC	3 cut(s)	54, 123, 246
Alw26I	GTCTC	2 cut(s)	209, 259
Alw44I	GTGCAC	1 cut(s)	242
AlwI	GGATC	1 cut(s)	452
AlwNI	CAGNNNCTG	1 cut(s)	983
Ama87I	CYCGRG	1 cut(s)	603
AoxI	GGCC	4 cut(s)	712, 865, 941, 948
ApaLI	GTGCAC	1 cut(s)	242
ApeKI	GCWGC	3 cut(s)	353, 986, 1033
ApoI	RAATTY	4 cut(s)	159, 471, 818, 904
Asp700I	GAANNNNTTC	1 cut(s)	471
AspLEI	GCGC	3 cut(s)	7, 275, 1009
AspS9I	GGNCC	5 cut(s)	17, 37, 712, 941, 949
AsuC2I	CCSGG	3 cut(s)	420, 762, 1025
AsuHPI	GGTGA	3 cut(s)	40, 133, 631
AsuII	TTCGAA	1 cut(s)	784
AvaI	CYCGRG	1 cut(s)	603
AvaII	GGWCC	2 cut(s)	17, 37
BaeGI	GKGCMC	2 cut(s)	246, 510
BanI	GGYRCC	3 cut(s)	104, 113, 1006
BanII	GRGCYC	2 cut(s)	54, 123
BbsI	GAAGAC	1 cut(s)	1142
Bbv12I	GWGCWC	3 cut(s)	54, 123, 246
BbvI	GCAGC	3 cut(s)	365, 973, 1020
BccI	CCATC	4 cut(s)	172, 360, 630, 1165
BceAI	ACGGC	3 cut(s)	25, 222, 233
BciT130I	CCWGG	3 cut(s)	716, 808, 835
BciVI	GTATCC	1 cut(s)	814
BclI	TGATCA	3 cut(s)	621, 735, 1072
BcnI	CCSGG	3 cut(s)	420, 762, 1025
BcoDI	GTCTC	2 cut(s)	209, 259
BfaI	CTAG	2 cut(s)	519, 1086
BfmI	CTRYAG	1 cut(s)	987
BfoI	RGCGCY	1 cut(s)	1010
BfuAI	ACCTGC	1 cut(s)	16
BfuI	GTATCC	1 cut(s)	814
BisI	GCNGC	7 cut(s)	13, 103, 287, 354, 432, 987, 1034
BlpI	GCTNAGC	1 cut(s)	98
BlsI	GCNGC	7 cut(s)	14, 104, 288, 355, 433, 988, 1035
Bme1390I	CCNGG	6 cut(s)	420, 716, 762, 808, 835, 1025
Bme18I	GGWCC	2 cut(s)	17, 37
BmeT110I	CYCGRG	1 cut(s)	603
BmgBI	CACGTC	1 cut(s)	1120
BmgT120I	GGNCC	5 cut(s)	17, 37, 712, 941, 949
BmiI	GGNNCC	6 cut(s)	106, 115, 951, 1008, 1068, 1198
BmrFI	CCNGG	6 cut(s)	420, 716, 762, 808, 835, 1025
BmrI	ACTGGG	1 cut(s)	147
BmuI	ACTGGG	1 cut(s)	147
BpiI	GAAGAC	1 cut(s)	1142
Bpu1102I	GCTNAGC	1 cut(s)	98
Bpu14I	TTCGAA	1 cut(s)	784
BpuEI	CTTGAG	2 cut(s)	68, 549
BpuMI	CCSGG	3 cut(s)	420, 762, 1025
BsaAI	YACGTR	1 cut(s)	1146
BsaHI	GRCGYC	2 cut(s)	75, 1007
BsaJI	CCNNGG	3 cut(s)	20, 630, 1062
BsaWI	WCCGGW	1 cut(s)	460
Bsc4I	CCNNNNNNNGG	5 cut(s)	467, 636, 958, 1163, 1206
Bse118I	RCCGGY	1 cut(s)	110
Bse1I	ACTGG	3 cut(s)	39, 153, 258
BseBI	CCWGG	3 cut(s)	716, 808, 835
BseDI	CCNNGG	3 cut(s)	20, 630, 1062
BseGI	GGATG	3 cut(s)	371, 428, 641
BseLI	CCNNNNNNNGG	5 cut(s)	467, 636, 958, 1163, 1206
BseMII	CTCAG	4 cut(s)	67, 112, 320, 895
BseNI	ACTGG	3 cut(s)	39, 153, 258
BseSI	GKGCMC	2 cut(s)	246, 510
BseXI	GCAGC	3 cut(s)	365, 973, 1020
BseYI	CCCAGC	1 cut(s)	1097
BsgI	GTGCAG	1 cut(s)	996
Bsh1236I	CGCG	2 cut(s)	273, 902
BshFI	GGCC	4 cut(s)	714, 867, 943, 950
BshNI	GGYRCC	3 cut(s)	104, 113, 1006
BsiHKAI	GWGCWC	3 cut(s)	54, 123, 246
BsiHKCI	CYCGRG	1 cut(s)	603
BsiSI	CCGG	5 cut(s)	111, 419, 461, 762, 1024
BslI	CCNNNNNNNGG	5 cut(s)	467, 636, 958, 1163, 1206
BsmAI	GTCTC	2 cut(s)	209, 259
BsmI	GAATGC	2 cut(s)	598, 817
BsnI	GGCC	4 cut(s)	714, 867, 943, 950
BsoBI	CYCGRG	1 cut(s)	603
Bsp119I	TTCGAA	1 cut(s)	784
Bsp1286I	GDGCHC	4 cut(s)	54, 123, 246, 510
Bsp143I	GATC	5 cut(s)	457, 621, 735, 877, 1072
Bsp1720I	GCTNAGC	1 cut(s)	98
Bsp19I	CCATGG	1 cut(s)	630
Bsp68I	TCGCGA	1 cut(s)	902
BspANI	GGCC	4 cut(s)	714, 867, 943, 950
BspCNI	CTCAG	4 cut(s)	66, 111, 319, 894
BspFNI	CGCG	2 cut(s)	273, 902
BspLI	GGNNCC	6 cut(s)	106, 115, 951, 1008, 1068, 1198
BspMAI	CTGCAG	1 cut(s)	991
BspMI	ACCTGC	1 cut(s)	16
BspPI	GGATC	1 cut(s)	452
BspT104I	TTCGAA	1 cut(s)	784
BspT107I	GGYRCC	3 cut(s)	104, 113, 1006
BsrFI	RCCGGY	1 cut(s)	110
BsrI	ACTGG	3 cut(s)	39, 153, 258
BssAI	RCCGGY	1 cut(s)	110
BssECI	CCNNGG	3 cut(s)	20, 630, 1062
BssMI	GATC	5 cut(s)	457, 621, 735, 877, 1072
BssNI	GRCGYC	2 cut(s)	75, 1007
BssT1I	CCWWGG	3 cut(s)	20, 630, 1062
Bst2UI	CCWGG	3 cut(s)	716, 808, 835
Bst4CI	ACNGT	2 cut(s)	1042, 1201
BstACI	GRCGYC	2 cut(s)	75, 1007
BstAPI	GCANNNNNTGC	1 cut(s)	983
BstBAI	YACGTR	1 cut(s)	1146
BstBI	TTCGAA	1 cut(s)	784
BstC8I	GCNNGC	7 cut(s)	50, 95, 112, 246, 561, 941, 984
BstDEI	CTNAG	7 cut(s)	53, 98, 306, 344, 357, 703, 881
BstDSI	CCRYGG	1 cut(s)	630
BstF5I	GGATG	3 cut(s)	371, 428, 641
BstFNI	CGCG	2 cut(s)	273, 902
BstH2I	RGCGCY	1 cut(s)	1010
BstHHI	GCGC	3 cut(s)	7, 275, 1009
BstKTI	GATC	5 cut(s)	460, 624, 738, 880, 1075
BstMAI	GTCTC	2 cut(s)	209, 259
BstMBI	GATC	5 cut(s)	457, 621, 735, 877, 1072
BstMWI	GCNNNNNNNGC	4 cut(s)	94, 99, 111, 983
BstNI	CCWGG	3 cut(s)	716, 808, 835
BstSCI	CCNGG	6 cut(s)	418, 714, 760, 806, 833, 1023
BstSFI	CTRYAG	1 cut(s)	987
BstSLI	GKGCMC	2 cut(s)	246, 510
BstSNI	TACGTA	1 cut(s)	1146
BstUI	CGCG	2 cut(s)	273, 902
BstV1I	GCAGC	3 cut(s)	365, 973, 1020
BstV2I	GAAGAC	1 cut(s)	1142
BsuI	GTATCC	1 cut(s)	814
BsuRI	GGCC	4 cut(s)	714, 867, 943, 950
BtgI	CCRYGG	1 cut(s)	630
BtrI	CACGTC	1 cut(s)	1120
BtsCI	GGATG	3 cut(s)	371, 428, 641
BtuMI	TCGCGA	1 cut(s)	902
BveI	ACCTGC	1 cut(s)	16
Cac8I	GCNNGC	7 cut(s)	50, 95, 112, 246, 561, 941, 984
CaiI	CAGNNNCTG	1 cut(s)	983
CfoI	GCGC	3 cut(s)	7, 275, 1009
Cfr10I	RCCGGY	1 cut(s)	110
Cfr13I	GGNCC	5 cut(s)	17, 37, 712, 941, 949
CseI	GACGC	1 cut(s)	83
Csp6I	GTAC	6 cut(s)	189, 202, 251, 324, 746, 1147
CviAII	CATG	5 cut(s)	631, 671, 733, 1206, 1218
CviQI	GTAC	6 cut(s)	189, 202, 251, 324, 746, 1147
DdeI	CTNAG	7 cut(s)	53, 98, 306, 344, 357, 703, 881
DinI	GGCGCC	1 cut(s)	1008
DpnI	GATC	5 cut(s)	459, 623, 737, 879, 1074
DpnII	GATC	5 cut(s)	457, 621, 735, 877, 1072
EciI	GGCGGA	2 cut(s)	30, 80
Ecl136II	GAGCTC	2 cut(s)	52, 121
Eco105I	TACGTA	1 cut(s)	1146
Eco130I	CCWWGG	3 cut(s)	20, 630, 1062
Eco24I	GRGCYC	2 cut(s)	54, 123
Eco47I	GGWCC	2 cut(s)	17, 37
Eco53kI	GAGCTC	2 cut(s)	52, 121
Eco88I	CYCGRG	1 cut(s)	603
EcoICRI	GAGCTC	2 cut(s)	52, 121
EcoO109I	RGGNCCY	1 cut(s)	949
EcoRI	GAATTC	1 cut(s)	471
EcoRII	CCWGG	3 cut(s)	714, 806, 833
EcoT14I	CCWWGG	3 cut(s)	20, 630, 1062
EcoT38I	GRGCYC	2 cut(s)	54, 123
EgeI	GGCGCC	1 cut(s)	1008
EheI	GGCGCC	1 cut(s)	1008
ErhI	CCWWGG	3 cut(s)	20, 630, 1062
FaeI	CATG	5 cut(s)	634, 674, 736, 1209, 1221
FatI	CATG	5 cut(s)	630, 670, 732, 1205, 1217
FauI	CCCGC	2 cut(s)	156, 932
FbaI	TGATCA	3 cut(s)	621, 735, 1072
FblI	GTMKAC	2 cut(s)	384, 1122
Fnu4HI	GCNGC	7 cut(s)	13, 103, 287, 354, 432, 987, 1034
FokI	GGATG	3 cut(s)	378, 435, 648
FriOI	GRGCYC	2 cut(s)	54, 123
Fsp4HI	GCNGC	7 cut(s)	13, 103, 287, 354, 432, 987, 1034
FspBI	CTAG	2 cut(s)	519, 1086
GlaI	GCGC	3 cut(s)	6, 274, 1008
GluI	GCNGC	7 cut(s)	13, 103, 287, 354, 432, 987, 1034
GsaI	CCCAGC	1 cut(s)	1101
HaeII	RGCGCY	1 cut(s)	1010
HaeIII	GGCC	4 cut(s)	714, 867, 943, 950
HapII	CCGG	5 cut(s)	111, 419, 461, 762, 1024
HgaI	GACGC	1 cut(s)	83
HhaI	GCGC	3 cut(s)	7, 275, 1009
Hin1I	GRCGYC	2 cut(s)	75, 1007
Hin1II	CATG	5 cut(s)	634, 674, 736, 1209, 1221
Hin6I	GCGC	3 cut(s)	5, 273, 1007
HinP1I	GCGC	3 cut(s)	5, 273, 1007
HincII	GTYRAC	2 cut(s)	385, 1123
HindII	GTYRAC	2 cut(s)	385, 1123
HinfI	GANTC	4 cut(s)	57, 217, 599, 838
HpaII	CCGG	5 cut(s)	111, 419, 461, 762, 1024
HphI	GGTGA	3 cut(s)	40, 133, 631
Hpy166II	GTNNAC	5 cut(s)	204, 244, 385, 769, 1123
Hpy188I	TCNGA	5 cut(s)	56, 309, 740, 930, 1131
Hpy188III	TCNNGA	4 cut(s)	479, 603, 612, 901
Hpy8I	GTNNAC	5 cut(s)	204, 244, 385, 769, 1123
Hpy99I	CGWCG	3 cut(s)	77, 386, 1124
HpyAV	CCTTC	5 cut(s)	154, 355, 461, 547, 638
HpyCH4III	ACNGT	2 cut(s)	1042, 1201
HpyCH4IV	ACGT	5 cut(s)	696, 771, 955, 1119, 1145
HpyCH4V	TGCA	8 cut(s)	244, 674, 872, 977, 989, 1036, 1154, 1193
HpyF10VI	GCNNNNNNNGC	4 cut(s)	94, 99, 111, 983
HpyF3I	CTNAG	7 cut(s)	53, 98, 306, 344, 357, 703, 881
HpySE526I	ACGT	5 cut(s)	696, 771, 955, 1119, 1145
Hsp92I	GRCGYC	2 cut(s)	75, 1007
Hsp92II	CATG	5 cut(s)	634, 674, 736, 1209, 1221
HspAI	GCGC	3 cut(s)	5, 273, 1007
KasI	GGCGCC	1 cut(s)	1006
KroI	GCCGGC	1 cut(s)	110
KroNI	GCCGGC	1 cut(s)	112
Ksp22I	TGATCA	3 cut(s)	621, 735, 1072
Kzo9I	GATC	5 cut(s)	457, 621, 735, 877, 1072
LmnI	GCTCC	7 cut(s)	93, 126, 404, 556, 729, 1066, 1168
Lsp1109I	GCAGC	3 cut(s)	365, 973, 1020
MaeI	CTAG	2 cut(s)	519, 1086
MaeII	ACGT	5 cut(s)	696, 771, 955, 1119, 1145
MaeIII	GTNAC	2 cut(s)	1111, 1201
MalI	GATC	5 cut(s)	459, 623, 737, 879, 1074
MboI	GATC	5 cut(s)	457, 621, 735, 877, 1072
MboII	GAAGA	3 cut(s)	269, 659, 1147
MfeI	CAATTG	3 cut(s)	171, 675, 969
MhlI	GDGCHC	4 cut(s)	54, 123, 246, 510
Mly113I	GGCGCC	1 cut(s)	1007
MlyI	GAGTC	2 cut(s)	211, 847
MnlI	CCTC	5 cut(s)	90, 175, 486, 498, 1125
MroNI	GCCGGC	1 cut(s)	110
MroXI	GAANNNNTTC	1 cut(s)	471
MseI	TTAA	1 cut(s)	1020
MspA1I	CMGCKG	1 cut(s)	102
MspI	CCGG	5 cut(s)	111, 419, 461, 762, 1024
MspR9I	CCNGG	6 cut(s)	420, 716, 762, 808, 835, 1025
MunI	CAATTG	3 cut(s)	171, 675, 969
Mva1269I	GAATGC	2 cut(s)	598, 817
MvaI	CCWGG	3 cut(s)	716, 808, 835
MvnI	CGCG	2 cut(s)	273, 902
MwoI	GCNNNNNNNGC	4 cut(s)	94, 99, 111, 983
NaeI	GCCGGC	1 cut(s)	112
NarI	GGCGCC	1 cut(s)	1007
NciI	CCSGG	3 cut(s)	420, 762, 1025
NcoI	CCATGG	1 cut(s)	630
NdeII	GATC	5 cut(s)	457, 621, 735, 877, 1072
NgoMIV	GCCGGC	1 cut(s)	110
NlaIII	CATG	5 cut(s)	634, 674, 736, 1209, 1221
NlaIV	GGNNCC	6 cut(s)	106, 115, 951, 1008, 1068, 1198
NmuCI	GTSAC	2 cut(s)	1111, 1201
NruI	TCGCGA	1 cut(s)	902
NspV	TTCGAA	1 cut(s)	784
PaeR7I	CTCGAG	1 cut(s)	603
PaqCI	CACCTGC	1 cut(s)	16
PctI	GAATGC	2 cut(s)	598, 817
PdiI	GCCGGC	1 cut(s)	112
PdmI	GAANNNNTTC	1 cut(s)	471
PfeI	GAWTC	2 cut(s)	57, 599
PflMI	CCANNNNNTGG	1 cut(s)	636
PfoI	TCCNGGA	3 cut(s)	418, 806, 833
PkrI	GCNGC	7 cut(s)	14, 104, 288, 355, 433, 988, 1035
PleI	GAGTC	2 cut(s)	211, 846
PluTI	GGCGCC	1 cut(s)	1010
PpsI	GAGTC	2 cut(s)	211, 846
Ppu21I	YACGTR	1 cut(s)	1146
Psp124BI	GAGCTC	2 cut(s)	54, 123
Psp1406I	AACGTT	1 cut(s)	696
Psp6I	CCWGG	3 cut(s)	714, 806, 833
PspFI	CCCAGC	1 cut(s)	1097
PspGI	CCWGG	3 cut(s)	714, 806, 833
PspN4I	GGNNCC	6 cut(s)	106, 115, 951, 1008, 1068, 1198
PspPI	GGNCC	5 cut(s)	17, 37, 712, 941, 949
PstI	CTGCAG	1 cut(s)	991
PstNI	CAGNNNCTG	1 cut(s)	983
RruI	TCGCGA	1 cut(s)	902
RsaI	GTAC	6 cut(s)	190, 203, 252, 325, 747, 1148
RsaNI	GTAC	6 cut(s)	189, 202, 251, 324, 746, 1147
SacI	GAGCTC	2 cut(s)	54, 123
SalI	GTCGAC	2 cut(s)	383, 1121
SaqAI	TTAA	1 cut(s)	1020
SatI	GCNGC	7 cut(s)	13, 103, 287, 354, 432, 987, 1034
Sau3AI	GATC	5 cut(s)	457, 621, 735, 877, 1072
Sau96I	GGNCC	5 cut(s)	17, 37, 712, 941, 949
SchI	GAGTC	2 cut(s)	211, 847
ScrFI	CCNGG	6 cut(s)	420, 716, 762, 808, 835, 1025
SduI	GDGCHC	4 cut(s)	54, 123, 246, 510
SfcI	CTRYAG	1 cut(s)	987
SfoI	GGCGCC	1 cut(s)	1008
Sfr274I	CTCGAG	1 cut(s)	603
SfuI	TTCGAA	1 cut(s)	784
SinI	GGWCC	2 cut(s)	17, 37
SlaI	CTCGAG	1 cut(s)	603
SmlI	CTYRAG	3 cut(s)	83, 564, 603
SmoI	CTYRAG	3 cut(s)	83, 564, 603
SnaBI	TACGTA	1 cut(s)	1146
SspDI	GGCGCC	1 cut(s)	1006
SspI	AATATT	1 cut(s)	1018
SspMI	CTAG	2 cut(s)	519, 1086
SstI	GAGCTC	2 cut(s)	54, 123
StyD4I	CCNGG	6 cut(s)	418, 714, 760, 806, 833, 1023
StyI	CCWWGG	3 cut(s)	20, 630, 1062
TaaI	ACNGT	2 cut(s)	1042, 1201
TaiI	ACGT	5 cut(s)	699, 774, 958, 1122, 1148
TaqI	TCGA	6 cut(s)	60, 332, 384, 604, 784, 1122
TaqII	GACCGA	1 cut(s)	54
TatI	WGTACW	2 cut(s)	201, 745
TauI	GCSGC	4 cut(s)	15, 105, 289, 434
TfiI	GAWTC	2 cut(s)	57, 599
Tru1I	TTAA	1 cut(s)	1020
Tru9I	TTAA	1 cut(s)	1020
TseFI	GTSAC	2 cut(s)	1111, 1201
TseI	GCWGC	3 cut(s)	353, 986, 1033
Tsp45I	GTSAC	2 cut(s)	1111, 1201
TspDTI	ATGAA	2 cut(s)	659, 1044
TspGWI	ACGGA	3 cut(s)	206, 277, 812
Van91I	CCANNNNNTGG	1 cut(s)	636
VneI	GTGCAC	1 cut(s)	242
VpaK11BI	GGWCC	2 cut(s)	17, 37
XapI	RAATTY	4 cut(s)	159, 471, 818, 904
XhoI	CTCGAG	1 cut(s)	603
XmiI	GTMKAC	2 cut(s)	384, 1122
XmnI	GAANNNNTTC	1 cut(s)	471
XspI	CTAG	2 cut(s)	519, 1086

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.