Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0006876

Physical Location & Seq

Genomic Coordinates Reverse (-)

86199406 .. 86202940

Gene Structure 3535 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG633000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1287 bp

ATGGCCGGCGGCGGAATCAGGCAGGTCAAATTGGAGCGGGAGTGCGAACTCAGAATCGAAGTCGGCAACGACGCGCCTCTCAAGCTCCGTCTTCTCAACGGTACCGCCGAGATCTTCGGCACCGAGCTCCCCCCTGAAATCTGGCTCACCTTCCCTCCCAGGCTCAAATTCGCCGTGTTCACTTGGTATGGAGCCACAATCGAGATGGACGGCACCACCGAAACGGATTACACCGCCGATGAGACGCCGAATATCAGTTATGTAAATGTGCATGCTGTGCTGGATGCCCGGCGAAACCGTGCTAAAACGCTGTCGTCTGATGACCCTAATTCTCCTCAGGCTCAGGGACCGAGGGTGATTGTCGTGGGACCTTCGGATTCTGGGAAAAGTACATTGTCGAAAATGCTGCTTAGTTGGGCAGCTAAGCAGGGATGGAAACCTACTTTTGTCGACTTGGATATTGGACAAGGAGCTATAACAATTCCAGGATGCATTGCTGCTACTCCTATTGAAATGCCTATTGATCCGGTGGAAGGGATTCCCCTTGACATGCCCCTCGTTTATTTCTATGGGCACACAACTCCCATGAGCAATGTGGATTTGTACAGAGTGCTTGTGAAGGAGCTTTCTCAAATGGTAGAGAGACAATTTACTGGTAATGCTGAATCTCAAGCTGCTGGATTGGTCATCAACACCATGGGATGGATAGAAGGTGCTGGCTATGAGTTGCTTCTTCATGCAATTGACACATTCAATGCTAATGTTGTCTTGGTTTTGGGTCAGGAAAAGCTTTGCAGCATGCTCAGAGATGTATTAAAGAACAAGCCCAACGTGGATGTTGTTAAACTTCAAAAATCAGGGGGAGTTGTATCCAGGAATGTAAAATTCCGTCAAAAATCCAGGAGTCATAGGATAAGGGAATACTTTTATGGCCTCTCAAATGATCTCAGCCCACACTCTAATATCGCAAATTTCGGTGATTTATCCATCTTTCGAATCGGTGGTGGGCCACAGGCCCCTCGTTCAGCTTTGCCAATTGGTGCCGAGCCTGCTGCTGACCCTACAAGAGTGGTTCCTGTAAATATTAACCGTGATTTGCTCCATATGGTTCTCGCTATTTCATATGCTAAGGAGCCCGATGAAATTATCTCTAGTAATGTTGCTGGATTTGTCTTTGTCACAGACATCAACATTGAAAGAAAGACAATTACCTACCTTGCACCAGCCGCTGGCGAACTTCCAGGCAAATTTTTGATAGTAGGAACCTTGACATGGCTTGAAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000394 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006378 GO:0006379 GO:0006388 GO:0006396 GO:0006397 GO:0006399 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008033 GO:0008150 GO:0008152 GO:0008380 GO:0009791 GO:0009908 GO:0009987 GO:0010228 GO:0010467 GO:0016070 GO:0016071 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019205 GO:0022414 GO:0031123 GO:0031124 GO:0032501 GO:0032502 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043631 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0051731 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090567 GO:0099402 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

CLP1_N CLP1_P Clp1

Protein Analysis

428

Amino Acids

46.83

Weight (kDa)

5.66

Isoelectric Point (pI)

42.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CLP1_N	PF16573	10 - 101	3.8e-31	N-terminal beta-sandwich domain of polyadenylation factor
CLP1_P	PF16575	123 - 311	3.8e-70	mRNA cleavage and polyadenylation factor CLP1 P-loop
Clp1	PF06807	316 - 427	6.9e-33	Pre-mRNA cleavage complex II protein Clp1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006876)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04680 AT3G04680 AT3G04680
fragaria_vesca	FvH4_6g49260 FvH4_6g49260
malus_domestica	MD09G1046200.v1.1 MD09G1046500.v1.1 MD17G1047000.v1.1
prunus_persica	Prupe.3G272100_v2.0.a1
pyrus_communis	pycom09g03810 pycom09g04270 pycom111g03580 pycom111g03600 pycom111g03650 pycom17g04190
rosa_chinensis	RchiOBHm_Chr2g0169161
rosa_laevigata	RLG00000021838
rosa_multiflora	Rmu_ssc0000440.1_g000003
rosa_roxburghii	Rroxscaffold_2G00082380
rosa_rugosa	Rorug02G0537700 Rorug02G0537800
rosa_samantha	Rh2AG609300 Rh2BG622300 Rh2CG591000 Rh2DG633000
rosa_wichuraiana	Rw2G050540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	13
Acc65I	GGTACC	1 cut(s)	101
AccB1I	GGYRCC	4 cut(s)	101, 119, 212, 1040
AccB7I	CCANNNNNTGG	2 cut(s)	702, 1229
AccBSI	CCGCTC	1 cut(s)	37
AccI	GTMKAC	1 cut(s)	450
AccII	CGCG	1 cut(s)	74
AciI	CCGC	6 cut(s)	9, 12, 37, 105, 234, 1227
AclWI	GGATC	1 cut(s)	518
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	4 cut(s)	167, 884, 970, 1247
AcyI	GRCGYC	1 cut(s)	245
AfaI	GTAC	3 cut(s)	103, 391, 605
AfiI	CCNNNNNNNGG	4 cut(s)	533, 702, 1229, 1272
AgsI	TTSAA	5 cut(s)	512, 754, 851, 1196, 1280
AjnI	CCWGG	5 cut(s)	158, 484, 872, 899, 1240
AluBI	AGCT	8 cut(s)	85, 127, 422, 473, 625, 674, 790, 1028
AluI	AGCT	8 cut(s)	85, 127, 422, 473, 625, 674, 790, 1028
Alw21I	GWGCWC	1 cut(s)	129
Alw26I	GTCTC	2 cut(s)	236, 637
AlwI	GGATC	1 cut(s)	518
AlwNI	CAGNNNCTG	1 cut(s)	1229
AoxI	GGCC	4 cut(s)	3, 931, 1007, 1014
ApeKI	GCWGC	6 cut(s)	406, 419, 497, 674, 795, 1052
ApoI	RAATTY	4 cut(s)	167, 884, 970, 1247
Asp700I	GAANNNNTTC	1 cut(s)	537
Asp718I	GGTACC	1 cut(s)	101
AspLEI	GCGC	1 cut(s)	76
AspS9I	GGNCC	4 cut(s)	347, 368, 1007, 1015
AsuC2I	CCSGG	1 cut(s)	289
AsuHPI	GGTGA	3 cut(s)	139, 367, 989
AsuII	TTCGAA	1 cut(s)	994
AvaII	GGWCC	2 cut(s)	347, 368
AxyI	CCTNAGG	1 cut(s)	336
BaeGI	GKGCMC	1 cut(s)	576
BanI	GGYRCC	4 cut(s)	101, 119, 212, 1040
BanII	GRGCYC	2 cut(s)	129, 1137
BbsI	GAAGAC	1 cut(s)	83
Bbv12I	GWGCWC	1 cut(s)	129
BbvI	GCAGC	6 cut(s)	393, 431, 484, 661, 807, 1039
BccI	CCATC	4 cut(s)	199, 426, 696, 995
BceAI	ACGGC	2 cut(s)	158, 226
BcgI	CGANNNNNNTGC	4 cut(s)	388, 422, 1034, 1068
BciT130I	CCWGG	5 cut(s)	160, 486, 874, 901, 1242
BciVI	GTATCC	1 cut(s)	880
BcnI	CCSGG	1 cut(s)	289
BcoDI	GTCTC	2 cut(s)	236, 637
BfaI	CTAG	1 cut(s)	1152
BfuAI	ACCTGC	1 cut(s)	13
BfuI	GTATCC	1 cut(s)	880
BglII	AGATCT	1 cut(s)	111
BisI	GCNGC	8 cut(s)	10, 407, 420, 498, 675, 796, 1053, 1227
BlpI	GCTNAGC	1 cut(s)	423
BlsI	GCNGC	8 cut(s)	11, 408, 421, 499, 676, 797, 1054, 1228
Bme1390I	CCNGG	6 cut(s)	160, 289, 486, 874, 901, 1242
Bme18I	GGWCC	2 cut(s)	347, 368
BmgT120I	GGNCC	4 cut(s)	347, 368, 1007, 1015
BmrFI	CCNGG	6 cut(s)	160, 289, 486, 874, 901, 1242
BmsI	GCATC	2 cut(s)	274, 479
BpiI	GAAGAC	1 cut(s)	83
Bpu10I	CCTNAGC	2 cut(s)	342, 1128
Bpu1102I	GCTNAGC	1 cut(s)	423
Bpu14I	TTCGAA	1 cut(s)	994
BpuEI	CTTGAG	2 cut(s)	65, 654
BpuMI	CCSGG	1 cut(s)	289
BsaHI	GRCGYC	1 cut(s)	245
BsaJI	CCNNGG	3 cut(s)	158, 350, 696
BsaWI	WCCGGW	1 cut(s)	526
BsaXI	ACNNNNNCTCC	4 cut(s)	26, 56, 139, 169
Bsc4I	CCNNNNNNNGG	4 cut(s)	533, 702, 1229, 1272
Bse118I	RCCGGY	1 cut(s)	5
Bse1I	ACTGG	1 cut(s)	658
Bse21I	CCTNAGG	1 cut(s)	336
Bse3DI	GCAATG	2 cut(s)	492, 598
BseBI	CCWGG	5 cut(s)	160, 486, 874, 901, 1242
BseDI	CCNNGG	3 cut(s)	158, 350, 696
BseGI	GGATG	5 cut(s)	289, 437, 494, 707, 841
BseLI	CCNNNNNNNGG	4 cut(s)	533, 702, 1229, 1272
BseMI	GCAATG	2 cut(s)	492, 598
BseMII	CTCAG	5 cut(s)	64, 350, 356, 817, 961
BseNI	ACTGG	1 cut(s)	658
BseRI	GAGGAG	1 cut(s)	324
BseSI	GKGCMC	1 cut(s)	576
BseXI	GCAGC	6 cut(s)	393, 431, 484, 661, 807, 1039
Bsh1236I	CGCG	1 cut(s)	74
BshFI	GGCC	4 cut(s)	5, 933, 1009, 1016
BshNI	GGYRCC	4 cut(s)	101, 119, 212, 1040
BsiHKAI	GWGCWC	1 cut(s)	129
BsiSI	CCGG	3 cut(s)	6, 289, 527
BslFI	GGGAC	2 cut(s)	360, 381
BslI	CCNNNNNNNGG	4 cut(s)	533, 702, 1229, 1272
BsmAI	GTCTC	2 cut(s)	236, 637
BsmBI	CGTCTC	1 cut(s)	236
BsmFI	GGGAC	2 cut(s)	360, 381
BsnI	GGCC	4 cut(s)	5, 933, 1009, 1016
Bsp119I	TTCGAA	1 cut(s)	994
Bsp1286I	GDGCHC	3 cut(s)	129, 576, 1137
Bsp1407I	TGTACA	1 cut(s)	603
Bsp143I	GATC	3 cut(s)	111, 523, 943
Bsp1720I	GCTNAGC	1 cut(s)	423
Bsp19I	CCATGG	1 cut(s)	696
BspACI	CCGC	6 cut(s)	9, 12, 37, 105, 234, 1227
BspANI	GGCC	4 cut(s)	5, 933, 1009, 1016
BspCNI	CTCAG	5 cut(s)	63, 349, 355, 816, 960
BspFNI	CGCG	1 cut(s)	74
BspMI	ACCTGC	1 cut(s)	13
BspPI	GGATC	1 cut(s)	518
BspT104I	TTCGAA	1 cut(s)	994
BspT107I	GGYRCC	4 cut(s)	101, 119, 212, 1040
BsrBI	CCGCTC	1 cut(s)	37
BsrDI	GCAATG	2 cut(s)	492, 598
BsrFI	RCCGGY	1 cut(s)	5
BsrGI	TGTACA	1 cut(s)	603
BsrI	ACTGG	1 cut(s)	658
BssAI	RCCGGY	1 cut(s)	5
BssECI	CCNNGG	3 cut(s)	158, 350, 696
BssMI	GATC	3 cut(s)	111, 523, 943
BssNI	GRCGYC	1 cut(s)	245
BssT1I	CCWWGG	1 cut(s)	696
Bst2UI	CCWGG	5 cut(s)	160, 486, 874, 901, 1242
Bst4CI	ACNGT	3 cut(s)	101, 299, 1091
BstACI	GRCGYC	1 cut(s)	245
BstAPI	GCANNNNNTGC	1 cut(s)	277
BstAUI	TGTACA	1 cut(s)	603
BstBI	TTCGAA	1 cut(s)	994
BstC8I	GCNNGC	6 cut(s)	7, 273, 718, 800, 1050, 1231
BstDEI	CTNAG	8 cut(s)	50, 336, 342, 410, 423, 803, 947, 1128
BstDSI	CCRYGG	1 cut(s)	696
BstF5I	GGATG	5 cut(s)	289, 437, 494, 707, 841
BstFNI	CGCG	1 cut(s)	74
BstHHI	GCGC	1 cut(s)	76
BstKTI	GATC	3 cut(s)	114, 526, 946
BstMAI	GTCTC	2 cut(s)	236, 637
BstMBI	GATC	3 cut(s)	111, 523, 943
BstMWI	GCNNNNNNNGC	4 cut(s)	82, 277, 1049, 1226
BstNI	CCWGG	5 cut(s)	160, 486, 874, 901, 1242
BstNSI	RCATGY	3 cut(s)	275, 553, 802
BstSCI	CCNGG	6 cut(s)	158, 287, 484, 872, 899, 1240
BstSLI	GKGCMC	1 cut(s)	576
BstUI	CGCG	1 cut(s)	74
BstV1I	GCAGC	6 cut(s)	393, 431, 484, 661, 807, 1039
BstV2I	GAAGAC	1 cut(s)	83
BstX2I	RGATCY	1 cut(s)	111
BstYI	RGATCY	1 cut(s)	111
Bsu36I	CCTNAGG	1 cut(s)	336
BsuI	GTATCC	1 cut(s)	880
BsuRI	GGCC	4 cut(s)	5, 933, 1009, 1016
BtgI	CCRYGG	1 cut(s)	696
BtsCI	GGATG	5 cut(s)	289, 437, 494, 707, 841
BveI	ACCTGC	1 cut(s)	13
Cac8I	GCNNGC	6 cut(s)	7, 273, 718, 800, 1050, 1231
CaiI	CAGNNNCTG	1 cut(s)	1229
CfoI	GCGC	1 cut(s)	76
Cfr10I	RCCGGY	1 cut(s)	5
Cfr13I	GGNCC	4 cut(s)	347, 368, 1007, 1015
CseI	GACGC	2 cut(s)	80, 253
Csp6I	GTAC	3 cut(s)	102, 390, 604
CviAII	CATG	8 cut(s)	272, 550, 586, 697, 737, 799, 1272, 1284
CviQI	GTAC	3 cut(s)	102, 390, 604
DdeI	CTNAG	8 cut(s)	50, 336, 342, 410, 423, 803, 947, 1128
DpnI	GATC	3 cut(s)	113, 525, 945
DpnII	GATC	3 cut(s)	111, 523, 943
EaeI	YGGCCR	1 cut(s)	3
EciI	GGCGGA	1 cut(s)	27
Ecl136II	GAGCTC	1 cut(s)	127
Eco130I	CCWWGG	1 cut(s)	696
Eco24I	GRGCYC	2 cut(s)	129, 1137
Eco47I	GGWCC	2 cut(s)	347, 368
Eco53kI	GAGCTC	1 cut(s)	127
Eco81I	CCTNAGG	1 cut(s)	336
EcoICRI	GAGCTC	1 cut(s)	127
EcoO109I	RGGNCCY	2 cut(s)	368, 1015
EcoRII	CCWGG	5 cut(s)	158, 484, 872, 899, 1240
EcoT14I	CCWWGG	1 cut(s)	696
EcoT22I	ATGCAT	1 cut(s)	494
EcoT38I	GRGCYC	2 cut(s)	129, 1137
ErhI	CCWWGG	1 cut(s)	696
Esp3I	CGTCTC	1 cut(s)	236
FaeI	CATG	8 cut(s)	275, 553, 589, 700, 740, 802, 1275, 1287
FaqI	GGGAC	2 cut(s)	360, 381
FatI	CATG	8 cut(s)	271, 549, 585, 696, 736, 798, 1271, 1283
FauI	CCCGC	1 cut(s)	30
FauNDI	CATATG	2 cut(s)	1104, 1123
FblI	GTMKAC	1 cut(s)	450
Fnu4HI	GCNGC	8 cut(s)	10, 407, 420, 498, 675, 796, 1053, 1227
FokI	GGATG	5 cut(s)	296, 444, 501, 714, 848
FriOI	GRGCYC	2 cut(s)	129, 1137
Fsp4HI	GCNGC	8 cut(s)	10, 407, 420, 498, 675, 796, 1053, 1227
FspBI	CTAG	1 cut(s)	1152
GlaI	GCGC	1 cut(s)	75
GluI	GCNGC	8 cut(s)	10, 407, 420, 498, 675, 796, 1053, 1227
HaeIII	GGCC	4 cut(s)	5, 933, 1009, 1016
HapII	CCGG	3 cut(s)	6, 289, 527
HgaI	GACGC	2 cut(s)	80, 253
HhaI	GCGC	1 cut(s)	76
Hin1I	GRCGYC	1 cut(s)	245
Hin1II	CATG	8 cut(s)	275, 553, 589, 700, 740, 802, 1275, 1287
Hin6I	GCGC	1 cut(s)	74
HinP1I	GCGC	1 cut(s)	74
HincII	GTYRAC	1 cut(s)	451
HindII	GTYRAC	1 cut(s)	451
HindIII	AAGCTT	1 cut(s)	788
HinfI	GANTC	7 cut(s)	15, 54, 377, 538, 665, 904, 996
HpaII	CCGG	3 cut(s)	6, 289, 527
HphI	GGTGA	3 cut(s)	139, 367, 989
Hpy166II	GTNNAC	2 cut(s)	180, 451
Hpy188I	TCNGA	4 cut(s)	53, 319, 376, 806
Hpy188III	TCNNGA	2 cut(s)	202, 782
Hpy8I	GTNNAC	2 cut(s)	180, 451
Hpy99I	CGWCG	1 cut(s)	74
HpyAV	CCTTC	5 cut(s)	160, 381, 527, 613, 704
HpyCH4III	ACNGT	3 cut(s)	101, 299, 1091
HpyCH4IV	ACGT	1 cut(s)	831
HpyCH4V	TGCA	5 cut(s)	271, 492, 740, 795, 1220
HpyF10VI	GCNNNNNNNGC	4 cut(s)	82, 277, 1049, 1226
HpyF3I	CTNAG	8 cut(s)	50, 336, 342, 410, 423, 803, 947, 1128
HpySE526I	ACGT	1 cut(s)	831
Hsp92I	GRCGYC	1 cut(s)	245
Hsp92II	CATG	8 cut(s)	275, 553, 589, 700, 740, 802, 1275, 1287
HspAI	GCGC	1 cut(s)	74
KpnI	GGTACC	1 cut(s)	105
KroI	GCCGGC	1 cut(s)	5
KroNI	GCCGGC	1 cut(s)	7
Kzo9I	GATC	3 cut(s)	111, 523, 943
LmnI	GCTCC	8 cut(s)	34, 90, 132, 191, 470, 622, 1104, 1132
Lsp1109I	GCAGC	6 cut(s)	393, 431, 484, 661, 807, 1039
LweI	GCATC	2 cut(s)	274, 479
MaeI	CTAG	1 cut(s)	1152
MaeII	ACGT	1 cut(s)	831
MaeIII	GTNAC	1 cut(s)	1177
MalI	GATC	3 cut(s)	113, 525, 945
MbiI	CCGCTC	1 cut(s)	37
MboI	GATC	3 cut(s)	111, 523, 943
MboII	GAAGA	3 cut(s)	83, 106, 725
MfeI	CAATTG	2 cut(s)	741, 1035
MflI	RGATCY	1 cut(s)	111
MhlI	GDGCHC	3 cut(s)	129, 576, 1137
MlyI	GAGTC	1 cut(s)	913
MnlI	CCTC	7 cut(s)	87, 165, 345, 345, 566, 944, 1029
Mph1103I	ATGCAT	1 cut(s)	494
MroNI	GCCGGC	1 cut(s)	5
MroXI	GAANNNNTTC	1 cut(s)	537
MseI	TTAA	3 cut(s)	815, 843, 1086
MspA1I	CMGCKG	1 cut(s)	1229
MspI	CCGG	3 cut(s)	6, 289, 527
MspR9I	CCNGG	6 cut(s)	160, 289, 486, 874, 901, 1242
MunI	CAATTG	2 cut(s)	741, 1035
MvaI	CCWGG	5 cut(s)	160, 486, 874, 901, 1242
MvnI	CGCG	1 cut(s)	74
MwoI	GCNNNNNNNGC	4 cut(s)	82, 277, 1049, 1226
NaeI	GCCGGC	1 cut(s)	7
NciI	CCSGG	1 cut(s)	289
NcoI	CCATGG	1 cut(s)	696
NdeI	CATATG	2 cut(s)	1104, 1123
NdeII	GATC	3 cut(s)	111, 523, 943
NgoMIV	GCCGGC	1 cut(s)	5
NlaIII	CATG	8 cut(s)	275, 553, 589, 700, 740, 802, 1275, 1287
NmeAIII	GCCGAG	2 cut(s)	133, 1069
NmuCI	GTSAC	1 cut(s)	1177
NsiI	ATGCAT	1 cut(s)	494
NspI	RCATGY	3 cut(s)	275, 553, 802
NspV	TTCGAA	1 cut(s)	994
PaeI	GCATGC	2 cut(s)	275, 802
PcsI	WCGNNNNNNNCGW	2 cut(s)	105, 216
PdiI	GCCGGC	1 cut(s)	7
PdmI	GAANNNNTTC	1 cut(s)	537
PfeI	GAWTC	6 cut(s)	15, 54, 377, 538, 665, 996
PflMI	CCANNNNNTGG	2 cut(s)	702, 1229
PfoI	TCCNGGA	3 cut(s)	484, 872, 899
PkrI	GCNGC	8 cut(s)	11, 408, 421, 499, 676, 797, 1054, 1228
PleI	GAGTC	1 cut(s)	912
PpsI	GAGTC	1 cut(s)	912
PpuMI	RGGWCCY	1 cut(s)	368
Psp124BI	GAGCTC	1 cut(s)	129
Psp5II	RGGWCCY	1 cut(s)	368
Psp6I	CCWGG	5 cut(s)	158, 484, 872, 899, 1240
PspGI	CCWGG	5 cut(s)	158, 484, 872, 899, 1240
PspPI	GGNCC	4 cut(s)	347, 368, 1007, 1015
PspPPI	RGGWCCY	1 cut(s)	368
PstNI	CAGNNNCTG	1 cut(s)	1229
PsuI	RGATCY	1 cut(s)	111
RsaI	GTAC	3 cut(s)	103, 391, 605
RsaNI	GTAC	3 cut(s)	102, 390, 604
SacI	GAGCTC	1 cut(s)	129
SalI	GTCGAC	1 cut(s)	449
SaqAI	TTAA	3 cut(s)	815, 843, 1086
SatI	GCNGC	8 cut(s)	10, 407, 420, 498, 675, 796, 1053, 1227
Sau3AI	GATC	3 cut(s)	111, 523, 943
Sau96I	GGNCC	4 cut(s)	347, 368, 1007, 1015
SchI	GAGTC	1 cut(s)	913
ScrFI	CCNGG	6 cut(s)	160, 289, 486, 874, 901, 1242
SduI	GDGCHC	3 cut(s)	129, 576, 1137
SfaNI	GCATC	2 cut(s)	274, 479
SfuI	TTCGAA	1 cut(s)	994
SinI	GGWCC	2 cut(s)	347, 368
SmlI	CTYRAG	2 cut(s)	80, 669
SmoI	CTYRAG	2 cut(s)	80, 669
SphI	GCATGC	2 cut(s)	275, 802
SsiI	CCGC	6 cut(s)	9, 12, 37, 105, 234, 1227
SspI	AATATT	1 cut(s)	1084
SspMI	CTAG	1 cut(s)	1152
SstI	GAGCTC	1 cut(s)	129
StyD4I	CCNGG	6 cut(s)	158, 287, 484, 872, 899, 1240
StyI	CCWWGG	1 cut(s)	696
TaaI	ACNGT	3 cut(s)	101, 299, 1091
TaiI	ACGT	1 cut(s)	834
TaqI	TCGA	5 cut(s)	57, 201, 398, 450, 994
TaqII	GACCGA	1 cut(s)	364
TatI	WGTACW	2 cut(s)	389, 603
TauI	GCSGC	2 cut(s)	12, 1229
TfiI	GAWTC	6 cut(s)	15, 54, 377, 538, 665, 996
Tru1I	TTAA	3 cut(s)	815, 843, 1086
Tru9I	TTAA	3 cut(s)	815, 843, 1086
TseFI	GTSAC	1 cut(s)	1177
TseI	GCWGC	6 cut(s)	406, 419, 497, 674, 795, 1052
Tsp45I	GTSAC	1 cut(s)	1177
TspDTI	ATGAA	3 cut(s)	725, 1110, 1155
TspGWI	ACGGA	3 cut(s)	77, 239, 878
Van91I	CCANNNNNTGG	2 cut(s)	702, 1229
VpaK11BI	GGWCC	2 cut(s)	347, 368
XapI	RAATTY	4 cut(s)	167, 884, 970, 1247
XceI	RCATGY	3 cut(s)	275, 553, 802
XcmI	CCANNNNNNNNNTGG	2 cut(s)	202, 592
XmiI	GTMKAC	1 cut(s)	450
XmnI	GAANNNNTTC	1 cut(s)	537
XspI	CTAG	1 cut(s)	1152
Zsp2I	ATGCAT	1 cut(s)	494

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.