Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0006876

Physical Location & Seq

Genomic Coordinates Reverse (-)

76734356 .. 76746571

Gene Structure 12216 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG591000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1287 bp

ATGGCCGGCGGCGGAATCAGGCAGGTCAAATTGGAGCGGGAGTGCGAACTCAGAATCGAAGTCGGCAACGACGCGCCTCTCAAGCTCCGTCTTCTCAACGGTACCGCCGAGATCTTCGGCACCGAGCTCCCCCCTGAAATCTGGCTCACCTTCCCTCCCAGGCTCAAATTCGCCGTGTTCACTTGGTATGGAGCCACAATCGAGATGGACGGCACCACCGAAACGGATTACACCGCCGATGAGACGCCGAATATCAGTTATGTAAATGTGCATGCTGTGCTGGATGCCCGGCGAAACCGCGCTAAAACGCTGTCGGCTGATGACCCTAATTCTCCTCAGGCTCAGGGACCGAGGGTGATTGTCGTGGGACCTTCGGATTCTGGGAAAAGTACATTGTCGAAAATGCTGCTTAGTTGGGCAGCTAAGCAGGGATGGAAACCTACTTTTGTCGACTTGGATATTGGACAAGGAGCTATAACAATTCCAGGATGCATTGCTGCTACTCCTATTGAAATGCCTATTGATCCGGTGGAAGGGATTCCCCTTGACATGCCCCTCGTTTATTTCTATGGGCACACAACTCCCATGAGCAATGTGGATTTGTACAGAGTGCTTGTGAAGGAGCTTTCTCAAATGGTAGAGAGACAATTTACTGGTAATGCTGAATCTCAAGCTGCTGGATTGGTCATCAACACCATGGGATGGATAGAAGGTGCCGGCTATGAGTTGCTTCTTCATGCAATTGACACATTCAATGCTAATGTTGTCTTGGTTTTGGGTCAGGAAAAGCTTTGCAGCATGCTCAGAGATGTATTAAAGAACAAGCCCAACGTGGATGTTGTTAAACTTCAAAAATCAGGGGGAGTTGTATCCAGGAATGTAAAATTCCGTCAAAAATCCAGGAGTCATAGGATAAGGGAATACTTTTATGGCCTCTCAAATGATCTCAGCCCACACTCTAATATCGCAAATTTCGGTGATTTATCCATCTTTCGAATCGGTGGTGGACCACAGGCCCCTCGTTCAGCTTTGCCAATTGGTGCCGAGCCTGCTGCTGACCCTACAAGAGTGGTTCCTGTAAATATTAACCGTGATTTGCTCCATATGGTTCTCGCTATTTCATATGCTAAGGAGCCCGATGAAATTATCTCTAGTAATGTTGCTGGATTTGTCTTTGTCACAGACATCAACATTGAAAGAAAGACAATTACCTACCTTGCACCAGCCGCTGGCGAACTTCCAGGCAAATTTTTGATAGTAGGAACCTTGACATGGCTTGAAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000394 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006378 GO:0006379 GO:0006388 GO:0006396 GO:0006397 GO:0006399 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008033 GO:0008150 GO:0008152 GO:0008380 GO:0009791 GO:0009908 GO:0009987 GO:0010228 GO:0010467 GO:0016070 GO:0016071 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019205 GO:0022414 GO:0031123 GO:0031124 GO:0032501 GO:0032502 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043631 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0051731 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090567 GO:0099402 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

CLP1_N CLP1_P Clp1

Protein Analysis

428

Amino Acids

46.81

Weight (kDa)

5.66

Isoelectric Point (pI)

41.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CLP1_N	PF16573	10 - 101	3.8e-31	N-terminal beta-sandwich domain of polyadenylation factor
CLP1_P	PF16575	123 - 311	3.8e-70	mRNA cleavage and polyadenylation factor CLP1 P-loop
Clp1	PF06807	316 - 427	6.9e-33	Pre-mRNA cleavage complex II protein Clp1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006876)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04680 AT3G04680 AT3G04680
fragaria_vesca	FvH4_6g49260 FvH4_6g49260
malus_domestica	MD09G1046200.v1.1 MD09G1046500.v1.1 MD17G1047000.v1.1
prunus_persica	Prupe.3G272100_v2.0.a1
pyrus_communis	pycom09g03810 pycom09g04270 pycom111g03580 pycom111g03600 pycom111g03650 pycom17g04190
rosa_chinensis	RchiOBHm_Chr2g0169161
rosa_laevigata	RLG00000021838
rosa_multiflora	Rmu_ssc0000440.1_g000003
rosa_roxburghii	Rroxscaffold_2G00082380
rosa_rugosa	Rorug02G0537700 Rorug02G0537800
rosa_samantha	Rh2AG609300 Rh2BG622300 Rh2CG591000 Rh2DG633000
rosa_wichuraiana	Rw2G050540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	13
Acc65I	GGTACC	1 cut(s)	101
AccB1I	GGYRCC	5 cut(s)	101, 119, 212, 713, 1040
AccB7I	CCANNNNNTGG	2 cut(s)	702, 1229
AccBSI	CCGCTC	1 cut(s)	37
AccI	GTMKAC	1 cut(s)	450
AccII	CGCG	2 cut(s)	74, 300
AciI	CCGC	7 cut(s)	9, 12, 37, 105, 234, 298, 1227
AclWI	GGATC	1 cut(s)	518
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	4 cut(s)	167, 884, 970, 1247
AcyI	GRCGYC	1 cut(s)	245
AfaI	GTAC	3 cut(s)	103, 391, 605
AfiI	CCNNNNNNNGG	4 cut(s)	533, 702, 1229, 1272
AgsI	TTSAA	5 cut(s)	512, 754, 851, 1196, 1280
AjnI	CCWGG	5 cut(s)	158, 484, 872, 899, 1240
AluBI	AGCT	8 cut(s)	85, 127, 422, 473, 625, 674, 790, 1028
AluI	AGCT	8 cut(s)	85, 127, 422, 473, 625, 674, 790, 1028
Alw21I	GWGCWC	1 cut(s)	129
Alw26I	GTCTC	2 cut(s)	236, 637
AlwI	GGATC	1 cut(s)	518
AlwNI	CAGNNNCTG	1 cut(s)	1229
AoxI	GGCC	3 cut(s)	3, 931, 1014
ApeKI	GCWGC	6 cut(s)	406, 419, 497, 674, 795, 1052
ApoI	RAATTY	4 cut(s)	167, 884, 970, 1247
Asp700I	GAANNNNTTC	1 cut(s)	537
Asp718I	GGTACC	1 cut(s)	101
AspLEI	GCGC	2 cut(s)	76, 302
AspS9I	GGNCC	4 cut(s)	347, 368, 1007, 1015
AsuC2I	CCSGG	1 cut(s)	289
AsuHPI	GGTGA	3 cut(s)	139, 367, 989
AsuII	TTCGAA	1 cut(s)	994
AvaII	GGWCC	3 cut(s)	347, 368, 1007
AxyI	CCTNAGG	1 cut(s)	336
BaeGI	GKGCMC	1 cut(s)	576
BanI	GGYRCC	5 cut(s)	101, 119, 212, 713, 1040
BanII	GRGCYC	2 cut(s)	129, 1137
BbsI	GAAGAC	1 cut(s)	83
Bbv12I	GWGCWC	1 cut(s)	129
BbvI	GCAGC	6 cut(s)	393, 431, 484, 661, 807, 1039
BccI	CCATC	4 cut(s)	199, 426, 696, 995
BceAI	ACGGC	2 cut(s)	158, 226
BcgI	CGANNNNNNTGC	4 cut(s)	388, 422, 1034, 1068
BciT130I	CCWGG	5 cut(s)	160, 486, 874, 901, 1242
BciVI	GTATCC	1 cut(s)	880
BcnI	CCSGG	1 cut(s)	289
BcoDI	GTCTC	2 cut(s)	236, 637
BfaI	CTAG	1 cut(s)	1152
BfuAI	ACCTGC	1 cut(s)	13
BfuI	GTATCC	1 cut(s)	880
BglII	AGATCT	1 cut(s)	111
BisI	GCNGC	8 cut(s)	10, 407, 420, 498, 675, 796, 1053, 1227
BlpI	GCTNAGC	1 cut(s)	423
BlsI	GCNGC	8 cut(s)	11, 408, 421, 499, 676, 797, 1054, 1228
Bme1390I	CCNGG	6 cut(s)	160, 289, 486, 874, 901, 1242
Bme18I	GGWCC	3 cut(s)	347, 368, 1007
BmgT120I	GGNCC	4 cut(s)	347, 368, 1007, 1015
BmrFI	CCNGG	6 cut(s)	160, 289, 486, 874, 901, 1242
BmsI	GCATC	2 cut(s)	274, 479
BpiI	GAAGAC	1 cut(s)	83
Bpu10I	CCTNAGC	2 cut(s)	342, 1128
Bpu1102I	GCTNAGC	1 cut(s)	423
Bpu14I	TTCGAA	1 cut(s)	994
BpuEI	CTTGAG	2 cut(s)	65, 654
BpuMI	CCSGG	1 cut(s)	289
BsaHI	GRCGYC	1 cut(s)	245
BsaJI	CCNNGG	3 cut(s)	158, 350, 696
BsaWI	WCCGGW	1 cut(s)	526
BsaXI	ACNNNNNCTCC	4 cut(s)	26, 56, 139, 169
Bsc4I	CCNNNNNNNGG	4 cut(s)	533, 702, 1229, 1272
Bse118I	RCCGGY	2 cut(s)	5, 716
Bse1I	ACTGG	1 cut(s)	658
Bse21I	CCTNAGG	1 cut(s)	336
Bse3DI	GCAATG	2 cut(s)	492, 598
BseBI	CCWGG	5 cut(s)	160, 486, 874, 901, 1242
BseDI	CCNNGG	3 cut(s)	158, 350, 696
BseGI	GGATG	5 cut(s)	289, 437, 494, 707, 841
BseLI	CCNNNNNNNGG	4 cut(s)	533, 702, 1229, 1272
BseMI	GCAATG	2 cut(s)	492, 598
BseMII	CTCAG	5 cut(s)	64, 350, 356, 817, 961
BseNI	ACTGG	1 cut(s)	658
BseRI	GAGGAG	1 cut(s)	324
BseSI	GKGCMC	1 cut(s)	576
BseXI	GCAGC	6 cut(s)	393, 431, 484, 661, 807, 1039
Bsh1236I	CGCG	2 cut(s)	74, 300
BshFI	GGCC	3 cut(s)	5, 933, 1016
BshNI	GGYRCC	5 cut(s)	101, 119, 212, 713, 1040
BsiHKAI	GWGCWC	1 cut(s)	129
BsiSI	CCGG	4 cut(s)	6, 289, 527, 717
BslFI	GGGAC	2 cut(s)	360, 381
BslI	CCNNNNNNNGG	4 cut(s)	533, 702, 1229, 1272
BsmAI	GTCTC	2 cut(s)	236, 637
BsmBI	CGTCTC	1 cut(s)	236
BsmFI	GGGAC	2 cut(s)	360, 381
BsnI	GGCC	3 cut(s)	5, 933, 1016
Bsp119I	TTCGAA	1 cut(s)	994
Bsp1286I	GDGCHC	3 cut(s)	129, 576, 1137
Bsp1407I	TGTACA	1 cut(s)	603
Bsp143I	GATC	3 cut(s)	111, 523, 943
Bsp1720I	GCTNAGC	1 cut(s)	423
Bsp19I	CCATGG	1 cut(s)	696
BspACI	CCGC	7 cut(s)	9, 12, 37, 105, 234, 298, 1227
BspANI	GGCC	3 cut(s)	5, 933, 1016
BspCNI	CTCAG	5 cut(s)	63, 349, 355, 816, 960
BspFNI	CGCG	2 cut(s)	74, 300
BspMI	ACCTGC	1 cut(s)	13
BspPI	GGATC	1 cut(s)	518
BspT104I	TTCGAA	1 cut(s)	994
BspT107I	GGYRCC	5 cut(s)	101, 119, 212, 713, 1040
BsrBI	CCGCTC	1 cut(s)	37
BsrDI	GCAATG	2 cut(s)	492, 598
BsrFI	RCCGGY	2 cut(s)	5, 716
BsrGI	TGTACA	1 cut(s)	603
BsrI	ACTGG	1 cut(s)	658
BssAI	RCCGGY	2 cut(s)	5, 716
BssECI	CCNNGG	3 cut(s)	158, 350, 696
BssMI	GATC	3 cut(s)	111, 523, 943
BssNI	GRCGYC	1 cut(s)	245
BssT1I	CCWWGG	1 cut(s)	696
Bst2UI	CCWGG	5 cut(s)	160, 486, 874, 901, 1242
Bst4CI	ACNGT	2 cut(s)	101, 1091
BstACI	GRCGYC	1 cut(s)	245
BstAPI	GCANNNNNTGC	1 cut(s)	277
BstAUI	TGTACA	1 cut(s)	603
BstBI	TTCGAA	1 cut(s)	994
BstC8I	GCNNGC	6 cut(s)	7, 273, 718, 800, 1050, 1231
BstDEI	CTNAG	8 cut(s)	50, 336, 342, 410, 423, 803, 947, 1128
BstDSI	CCRYGG	1 cut(s)	696
BstF5I	GGATG	5 cut(s)	289, 437, 494, 707, 841
BstFNI	CGCG	2 cut(s)	74, 300
BstHHI	GCGC	2 cut(s)	76, 302
BstKTI	GATC	3 cut(s)	114, 526, 946
BstMAI	GTCTC	2 cut(s)	236, 637
BstMBI	GATC	3 cut(s)	111, 523, 943
BstMWI	GCNNNNNNNGC	4 cut(s)	82, 277, 1049, 1226
BstNI	CCWGG	5 cut(s)	160, 486, 874, 901, 1242
BstNSI	RCATGY	3 cut(s)	275, 553, 802
BstSCI	CCNGG	6 cut(s)	158, 287, 484, 872, 899, 1240
BstSLI	GKGCMC	1 cut(s)	576
BstUI	CGCG	2 cut(s)	74, 300
BstV1I	GCAGC	6 cut(s)	393, 431, 484, 661, 807, 1039
BstV2I	GAAGAC	1 cut(s)	83
BstX2I	RGATCY	1 cut(s)	111
BstYI	RGATCY	1 cut(s)	111
Bsu36I	CCTNAGG	1 cut(s)	336
BsuI	GTATCC	1 cut(s)	880
BsuRI	GGCC	3 cut(s)	5, 933, 1016
BtgI	CCRYGG	1 cut(s)	696
BtsCI	GGATG	5 cut(s)	289, 437, 494, 707, 841
BveI	ACCTGC	1 cut(s)	13
Cac8I	GCNNGC	6 cut(s)	7, 273, 718, 800, 1050, 1231
CaiI	CAGNNNCTG	1 cut(s)	1229
CfoI	GCGC	2 cut(s)	76, 302
Cfr10I	RCCGGY	2 cut(s)	5, 716
Cfr13I	GGNCC	4 cut(s)	347, 368, 1007, 1015
CseI	GACGC	2 cut(s)	80, 253
Csp6I	GTAC	3 cut(s)	102, 390, 604
CviAII	CATG	8 cut(s)	272, 550, 586, 697, 737, 799, 1272, 1284
CviQI	GTAC	3 cut(s)	102, 390, 604
DdeI	CTNAG	8 cut(s)	50, 336, 342, 410, 423, 803, 947, 1128
DpnI	GATC	3 cut(s)	113, 525, 945
DpnII	GATC	3 cut(s)	111, 523, 943
EaeI	YGGCCR	1 cut(s)	3
EciI	GGCGGA	1 cut(s)	27
Ecl136II	GAGCTC	1 cut(s)	127
Eco130I	CCWWGG	1 cut(s)	696
Eco24I	GRGCYC	2 cut(s)	129, 1137
Eco47I	GGWCC	3 cut(s)	347, 368, 1007
Eco53kI	GAGCTC	1 cut(s)	127
Eco81I	CCTNAGG	1 cut(s)	336
EcoICRI	GAGCTC	1 cut(s)	127
EcoO109I	RGGNCCY	2 cut(s)	368, 1015
EcoRII	CCWGG	5 cut(s)	158, 484, 872, 899, 1240
EcoT14I	CCWWGG	1 cut(s)	696
EcoT22I	ATGCAT	1 cut(s)	494
EcoT38I	GRGCYC	2 cut(s)	129, 1137
ErhI	CCWWGG	1 cut(s)	696
Esp3I	CGTCTC	1 cut(s)	236
FaeI	CATG	8 cut(s)	275, 553, 589, 700, 740, 802, 1275, 1287
FaqI	GGGAC	2 cut(s)	360, 381
FatI	CATG	8 cut(s)	271, 549, 585, 696, 736, 798, 1271, 1283
FauI	CCCGC	1 cut(s)	30
FauNDI	CATATG	2 cut(s)	1104, 1123
FblI	GTMKAC	1 cut(s)	450
Fnu4HI	GCNGC	8 cut(s)	10, 407, 420, 498, 675, 796, 1053, 1227
FokI	GGATG	5 cut(s)	296, 444, 501, 714, 848
FriOI	GRGCYC	2 cut(s)	129, 1137
Fsp4HI	GCNGC	8 cut(s)	10, 407, 420, 498, 675, 796, 1053, 1227
FspBI	CTAG	1 cut(s)	1152
GlaI	GCGC	2 cut(s)	75, 301
GluI	GCNGC	8 cut(s)	10, 407, 420, 498, 675, 796, 1053, 1227
HaeIII	GGCC	3 cut(s)	5, 933, 1016
HapII	CCGG	4 cut(s)	6, 289, 527, 717
HgaI	GACGC	2 cut(s)	80, 253
HhaI	GCGC	2 cut(s)	76, 302
Hin1I	GRCGYC	1 cut(s)	245
Hin1II	CATG	8 cut(s)	275, 553, 589, 700, 740, 802, 1275, 1287
Hin6I	GCGC	2 cut(s)	74, 300
HinP1I	GCGC	2 cut(s)	74, 300
HincII	GTYRAC	1 cut(s)	451
HindII	GTYRAC	1 cut(s)	451
HindIII	AAGCTT	1 cut(s)	788
HinfI	GANTC	7 cut(s)	15, 54, 377, 538, 665, 904, 996
HpaII	CCGG	4 cut(s)	6, 289, 527, 717
HphI	GGTGA	3 cut(s)	139, 367, 989
Hpy166II	GTNNAC	3 cut(s)	180, 451, 1007
Hpy188I	TCNGA	3 cut(s)	53, 376, 806
Hpy188III	TCNNGA	2 cut(s)	202, 782
Hpy8I	GTNNAC	3 cut(s)	180, 451, 1007
Hpy99I	CGWCG	1 cut(s)	74
HpyAV	CCTTC	5 cut(s)	160, 381, 527, 613, 704
HpyCH4III	ACNGT	2 cut(s)	101, 1091
HpyCH4IV	ACGT	1 cut(s)	831
HpyCH4V	TGCA	5 cut(s)	271, 492, 740, 795, 1220
HpyF10VI	GCNNNNNNNGC	4 cut(s)	82, 277, 1049, 1226
HpyF3I	CTNAG	8 cut(s)	50, 336, 342, 410, 423, 803, 947, 1128
HpySE526I	ACGT	1 cut(s)	831
Hsp92I	GRCGYC	1 cut(s)	245
Hsp92II	CATG	8 cut(s)	275, 553, 589, 700, 740, 802, 1275, 1287
HspAI	GCGC	2 cut(s)	74, 300
KpnI	GGTACC	1 cut(s)	105
KroI	GCCGGC	2 cut(s)	5, 716
KroNI	GCCGGC	2 cut(s)	7, 718
Kzo9I	GATC	3 cut(s)	111, 523, 943
LmnI	GCTCC	8 cut(s)	34, 90, 132, 191, 470, 622, 1104, 1132
Lsp1109I	GCAGC	6 cut(s)	393, 431, 484, 661, 807, 1039
LweI	GCATC	2 cut(s)	274, 479
MaeI	CTAG	1 cut(s)	1152
MaeII	ACGT	1 cut(s)	831
MaeIII	GTNAC	1 cut(s)	1177
MalI	GATC	3 cut(s)	113, 525, 945
MbiI	CCGCTC	1 cut(s)	37
MboI	GATC	3 cut(s)	111, 523, 943
MboII	GAAGA	3 cut(s)	83, 106, 725
MfeI	CAATTG	2 cut(s)	741, 1035
MflI	RGATCY	1 cut(s)	111
MhlI	GDGCHC	3 cut(s)	129, 576, 1137
MlyI	GAGTC	1 cut(s)	913
MnlI	CCTC	7 cut(s)	87, 165, 345, 345, 566, 944, 1029
Mph1103I	ATGCAT	1 cut(s)	494
MroNI	GCCGGC	2 cut(s)	5, 716
MroXI	GAANNNNTTC	1 cut(s)	537
MseI	TTAA	3 cut(s)	815, 843, 1086
MspA1I	CMGCKG	1 cut(s)	1229
MspI	CCGG	4 cut(s)	6, 289, 527, 717
MspR9I	CCNGG	6 cut(s)	160, 289, 486, 874, 901, 1242
MunI	CAATTG	2 cut(s)	741, 1035
MvaI	CCWGG	5 cut(s)	160, 486, 874, 901, 1242
MvnI	CGCG	2 cut(s)	74, 300
MwoI	GCNNNNNNNGC	4 cut(s)	82, 277, 1049, 1226
NaeI	GCCGGC	2 cut(s)	7, 718
NciI	CCSGG	1 cut(s)	289
NcoI	CCATGG	1 cut(s)	696
NdeI	CATATG	2 cut(s)	1104, 1123
NdeII	GATC	3 cut(s)	111, 523, 943
NgoMIV	GCCGGC	2 cut(s)	5, 716
NlaIII	CATG	8 cut(s)	275, 553, 589, 700, 740, 802, 1275, 1287
NmeAIII	GCCGAG	2 cut(s)	133, 1069
NmuCI	GTSAC	1 cut(s)	1177
NsiI	ATGCAT	1 cut(s)	494
NspI	RCATGY	3 cut(s)	275, 553, 802
NspV	TTCGAA	1 cut(s)	994
PaeI	GCATGC	2 cut(s)	275, 802
PcsI	WCGNNNNNNNCGW	2 cut(s)	105, 216
PdiI	GCCGGC	2 cut(s)	7, 718
PdmI	GAANNNNTTC	1 cut(s)	537
PfeI	GAWTC	6 cut(s)	15, 54, 377, 538, 665, 996
PflMI	CCANNNNNTGG	2 cut(s)	702, 1229
PfoI	TCCNGGA	3 cut(s)	484, 872, 899
PkrI	GCNGC	8 cut(s)	11, 408, 421, 499, 676, 797, 1054, 1228
PleI	GAGTC	1 cut(s)	912
PpsI	GAGTC	1 cut(s)	912
PpuMI	RGGWCCY	1 cut(s)	368
Psp124BI	GAGCTC	1 cut(s)	129
Psp5II	RGGWCCY	1 cut(s)	368
Psp6I	CCWGG	5 cut(s)	158, 484, 872, 899, 1240
PspGI	CCWGG	5 cut(s)	158, 484, 872, 899, 1240
PspPI	GGNCC	4 cut(s)	347, 368, 1007, 1015
PspPPI	RGGWCCY	1 cut(s)	368
PstNI	CAGNNNCTG	1 cut(s)	1229
PsuI	RGATCY	1 cut(s)	111
RsaI	GTAC	3 cut(s)	103, 391, 605
RsaNI	GTAC	3 cut(s)	102, 390, 604
SacI	GAGCTC	1 cut(s)	129
SalI	GTCGAC	1 cut(s)	449
SaqAI	TTAA	3 cut(s)	815, 843, 1086
SatI	GCNGC	8 cut(s)	10, 407, 420, 498, 675, 796, 1053, 1227
Sau3AI	GATC	3 cut(s)	111, 523, 943
Sau96I	GGNCC	4 cut(s)	347, 368, 1007, 1015
SchI	GAGTC	1 cut(s)	913
ScrFI	CCNGG	6 cut(s)	160, 289, 486, 874, 901, 1242
SduI	GDGCHC	3 cut(s)	129, 576, 1137
SfaNI	GCATC	2 cut(s)	274, 479
SfuI	TTCGAA	1 cut(s)	994
SinI	GGWCC	3 cut(s)	347, 368, 1007
SmlI	CTYRAG	2 cut(s)	80, 669
SmoI	CTYRAG	2 cut(s)	80, 669
SphI	GCATGC	2 cut(s)	275, 802
SsiI	CCGC	7 cut(s)	9, 12, 37, 105, 234, 298, 1227
SspI	AATATT	1 cut(s)	1084
SspMI	CTAG	1 cut(s)	1152
SstI	GAGCTC	1 cut(s)	129
StyD4I	CCNGG	6 cut(s)	158, 287, 484, 872, 899, 1240
StyI	CCWWGG	1 cut(s)	696
TaaI	ACNGT	2 cut(s)	101, 1091
TaiI	ACGT	1 cut(s)	834
TaqI	TCGA	5 cut(s)	57, 201, 398, 450, 994
TaqII	GACCGA	1 cut(s)	364
TatI	WGTACW	2 cut(s)	389, 603
TauI	GCSGC	2 cut(s)	12, 1229
TfiI	GAWTC	6 cut(s)	15, 54, 377, 538, 665, 996
Tru1I	TTAA	3 cut(s)	815, 843, 1086
Tru9I	TTAA	3 cut(s)	815, 843, 1086
TseFI	GTSAC	1 cut(s)	1177
TseI	GCWGC	6 cut(s)	406, 419, 497, 674, 795, 1052
Tsp45I	GTSAC	1 cut(s)	1177
TspDTI	ATGAA	3 cut(s)	725, 1110, 1155
TspGWI	ACGGA	3 cut(s)	77, 239, 878
Van91I	CCANNNNNTGG	2 cut(s)	702, 1229
VpaK11BI	GGWCC	3 cut(s)	347, 368, 1007
XapI	RAATTY	4 cut(s)	167, 884, 970, 1247
XceI	RCATGY	3 cut(s)	275, 553, 802
XcmI	CCANNNNNNNNNTGG	2 cut(s)	202, 592
XmiI	GTMKAC	1 cut(s)	450
XmnI	GAANNNNTTC	1 cut(s)	537
XspI	CTAG	1 cut(s)	1152
Zsp2I	ATGCAT	1 cut(s)	494

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.