pycom111g03580

Required for endonucleolytic cleavage during polyadenylation-dependent pre-mRNA 3'-end formation

Basic Information

Type: gene
Biological Identity
pyrus_communis
SuperScaffold_111
Physical Location & Seq
Forward (+)
2190754 .. 2193078
2325 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom111g03580.4

Sequence Viewer

Length: 1074 bp
ATGGAGGGCAGTACGGAAACCGAGTACACGGCTGATGAGACTCCAAATATCAGCTATGTGAATGTGCACGCCGTACTGGAAGAACGGAGACACCGCGCTAAACCCTTGCCGCCCGATGACCCCAATTCTCAGGGCCCAAGGGTGATTGTTGTGGGACCAACAGATTCTGGGAAAAGTACCTTGTCGAAAATGCTTCTTAGTTGGGCAGCTAAGAAGGGATGGAAACCTACGTTCGTCGACTTGGATATTGGACAAGGAGCTATAACAACTCCGGGATGCATTGCCGCTACTCCTATTGAAATGCCTATTGATCCAGTTGAAGGAATTCCTCTTGATATTCCTCTCGTTTATTTCTATGGGCACACAACTCCTAGTAATAATGTAGATTTATACAAAGTGCTTGTGAAGGAGCTTGCTCAAGTGGTAGAAAGACAACTTTCTGGGAATGCTGAATCTCGAGCTTCTGGAATGGTGATCAATACCATGGGATGGATAGAAGGTCAAGGCTACGAGTTGCTTCTTCATGCAATTGATACATTCAATGCCAATGTTATCTTAGTTCTGGGCCAGGAAAAACTTTGGAGCATGATCAGAAATGTACTAAAGAACAAGCCTGGTGTGGACGTTGTAAAACTTCAAAAATCTGGGGGTGTTGTATCCAGGAATGCCAAATTCCGTCAAAAATCCAGGAGTCATAGGATAAGGGAGTATTTCTATGGCCTTGCAAATGATCTCAGCCCACATTCTAATATCGCGAATTTTAGTGACTTTTCTGTCTTTCGGATTGGTGGCGGGCCACAGGCCCCACGTTCAGCTTTGCCAATTGGTGCAGAGCCTGCTGCGGACCCTACAAGATTGGCGCCTGTGAATATTAACCGGGATTTGCTACATACCATTCTTGCTGTTTCATTTGCCAAGGAGCCTGATCAAATTATTTCTAGTAATGTTGCTGGGTTTGTCTTTGTCACAGACGTCGACATTCAGAGGAAGACAATTACGTACCTTGCACCATCGGCGGGTGAGCTTCCAAGCAAGTATTTGACTGCAGGAACCGTGACATGGCTTGAAACATGA

Protein Analysis

358

Amino Acids

38.94

Weight (kDa)

6.4

Isoelectric Point (pI)

36.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 773
AatII GACGTC 1 cut(s) 975
AccB1I GGYRCC 1 cut(s) 859
AccB7I CCANNNNNTGG 1 cut(s) 489
AccI GTMKAC 2 cut(s) 237, 975
AccII CGCG 2 cut(s) 96, 755
AciI CCGC 6 cut(s) 94, 110, 285, 792, 842, 1016
AclWI GGATC 1 cut(s) 305
AcsI RAATTY 3 cut(s) 324, 671, 757
AcyI GRCGYC 2 cut(s) 860, 972
AfaI GTAC 6 cut(s) 13, 26, 75, 178, 600, 1001
AfiI CCNNNNNNNGG 4 cut(s) 320, 489, 1016, 1059
AgsI TTSAA 5 cut(s) 299, 320, 541, 638, 1067
AjnI CCWGG 4 cut(s) 567, 613, 659, 686
AluBI AGCT 7 cut(s) 54, 209, 260, 412, 461, 815, 1024
AluI AGCT 7 cut(s) 54, 209, 260, 412, 461, 815, 1024
Alw21I GWGCWC 1 cut(s) 69
Alw26I GTCTC 2 cut(s) 32, 82
Alw44I GTGCAC 1 cut(s) 65
AlwI GGATC 1 cut(s) 305
AlwNI CAGNNNCTG 2 cut(s) 167, 836
Ama87I CYCGRG 1 cut(s) 456
AoxI GGCC 5 cut(s) 133, 565, 718, 794, 801
ApaI GGGCCC 1 cut(s) 137
ApaLI GTGCAC 1 cut(s) 65
ApeKI GCWGC 2 cut(s) 206, 839
ApoI RAATTY 3 cut(s) 324, 671, 757
Asp700I GAANNNNTTC 1 cut(s) 324
AspLEI GCGC 2 cut(s) 98, 862
AspS9I GGNCC 7 cut(s) 133, 134, 155, 565, 794, 802, 844
AsuC2I CCSGG 2 cut(s) 273, 878
AsuHPI GGTGA 3 cut(s) 154, 484, 1031
AvaI CYCGRG 1 cut(s) 456
AvaII GGWCC 2 cut(s) 155, 844
BaeGI GKGCMC 3 cut(s) 69, 137, 363
BanI GGYRCC 1 cut(s) 859
BanII GRGCYC 1 cut(s) 137
BbsI GAAGAC 1 cut(s) 995
Bbv12I GWGCWC 1 cut(s) 69
BbvI GCAGC 2 cut(s) 218, 826
BccI CCATC 3 cut(s) 213, 483, 1018
BceAI ACGGC 2 cut(s) 45, 56
BciT130I CCWGG 4 cut(s) 569, 615, 661, 688
BciVI GTATCC 1 cut(s) 667
BclI TGATCA 3 cut(s) 474, 588, 925
BcnI CCSGG 2 cut(s) 273, 878
BcoDI GTCTC 2 cut(s) 32, 82
BfaI CTAG 2 cut(s) 372, 939
BfmI CTRYAG 1 cut(s) 1044
BfoI RGCGCY 1 cut(s) 863
BfuI GTATCC 1 cut(s) 667
BisI GCNGC 4 cut(s) 110, 207, 285, 840
BlsI GCNGC 4 cut(s) 111, 208, 286, 841
Bme1390I CCNGG 6 cut(s) 273, 569, 615, 661, 688, 878
Bme18I GGWCC 2 cut(s) 155, 844
BmeT110I CYCGRG 1 cut(s) 456
BmgT120I GGNCC 7 cut(s) 133, 134, 155, 565, 794, 802, 844
BmiI GGNNCC 7 cut(s) 135, 156, 804, 846, 861, 921, 1051
BmrFI CCNGG 6 cut(s) 273, 569, 615, 661, 688, 878
BmsI GCATC 1 cut(s) 266
BpiI GAAGAC 1 cut(s) 995
BpuEI CTTGAG 1 cut(s) 402
BpuMI CCSGG 2 cut(s) 273, 878
BsaAI YACGTR 1 cut(s) 999
BsaHI GRCGYC 2 cut(s) 860, 972
BsaJI CCNNGG 3 cut(s) 137, 483, 915
Bsc4I CCNNNNNNNGG 4 cut(s) 320, 489, 1016, 1059
Bse1I ACTGG 2 cut(s) 81, 314
Bse3DI GCAATG 1 cut(s) 279
BseBI CCWGG 4 cut(s) 569, 615, 661, 688
BseDI CCNNGG 3 cut(s) 137, 483, 915
BseGI GGATG 3 cut(s) 224, 281, 494
BseLI CCNNNNNNNGG 4 cut(s) 320, 489, 1016, 1059
BseMI GCAATG 1 cut(s) 279
BseMII CTCAG 2 cut(s) 143, 748
BseNI ACTGG 2 cut(s) 81, 314
BseSI GKGCMC 3 cut(s) 69, 137, 363
BseXI GCAGC 2 cut(s) 218, 826
BseYI CCCAGC 1 cut(s) 950
BsgI GTGCAG 1 cut(s) 849
Bsh1236I CGCG 2 cut(s) 96, 755
BshFI GGCC 5 cut(s) 135, 567, 720, 796, 803
BshNI GGYRCC 1 cut(s) 859
BsiHKAI GWGCWC 1 cut(s) 69
BsiHKCI CYCGRG 1 cut(s) 456
BsiSI CCGG 2 cut(s) 272, 877
BslFI GGGAC 1 cut(s) 168
BslI CCNNNNNNNGG 4 cut(s) 320, 489, 1016, 1059
BsmAI GTCTC 2 cut(s) 32, 82
BsmFI GGGAC 1 cut(s) 168
BsmI GAATGC 2 cut(s) 451, 670
BsnI GGCC 5 cut(s) 135, 567, 720, 796, 803
BsoBI CYCGRG 1 cut(s) 456
Bsp120I GGGCCC 1 cut(s) 133
Bsp1286I GDGCHC 3 cut(s) 69, 137, 363
Bsp143I GATC 5 cut(s) 310, 474, 588, 730, 925
Bsp19I CCATGG 1 cut(s) 483
Bsp68I TCGCGA 1 cut(s) 755
BspACI CCGC 6 cut(s) 94, 110, 285, 792, 842, 1016
BspANI GGCC 5 cut(s) 135, 567, 720, 796, 803
BspCNI CTCAG 2 cut(s) 142, 747
BspFNI CGCG 2 cut(s) 96, 755
BspLI GGNNCC 7 cut(s) 135, 156, 804, 846, 861, 921, 1051
BspMAI CTGCAG 1 cut(s) 1048
BspPI GGATC 1 cut(s) 305
BspT107I GGYRCC 1 cut(s) 859
BsrDI GCAATG 1 cut(s) 279
BsrI ACTGG 2 cut(s) 81, 314
BssECI CCNNGG 3 cut(s) 137, 483, 915
BssMI GATC 5 cut(s) 310, 474, 588, 730, 925
BssNI GRCGYC 2 cut(s) 860, 972
BssT1I CCWWGG 3 cut(s) 137, 483, 915
Bst2UI CCWGG 4 cut(s) 569, 615, 661, 688
Bst4CI ACNGT 1 cut(s) 1054
BstACI GRCGYC 2 cut(s) 860, 972
BstAPI GCANNNNNTGC 1 cut(s) 836
BstBAI YACGTR 1 cut(s) 999
BstC8I GCNNGC 4 cut(s) 69, 414, 794, 837
BstDEI CTNAG 5 cut(s) 129, 197, 210, 556, 734
BstDSI CCRYGG 1 cut(s) 483
BstF5I GGATG 3 cut(s) 224, 281, 494
BstFNI CGCG 2 cut(s) 96, 755
BstH2I RGCGCY 1 cut(s) 863
BstHHI GCGC 2 cut(s) 98, 862
BstKTI GATC 5 cut(s) 313, 477, 591, 733, 928
BstMAI GTCTC 2 cut(s) 32, 82
BstMBI GATC 5 cut(s) 310, 474, 588, 730, 925
BstMWI GCNNNNNNNGC 2 cut(s) 836, 1013
BstNI CCWGG 4 cut(s) 569, 615, 661, 688
BstSCI CCNGG 6 cut(s) 271, 567, 613, 659, 686, 876
BstSFI CTRYAG 1 cut(s) 1044
BstSLI GKGCMC 3 cut(s) 69, 137, 363
BstSNI TACGTA 1 cut(s) 999
BstUI CGCG 2 cut(s) 96, 755
BstV1I GCAGC 2 cut(s) 218, 826
BstV2I GAAGAC 1 cut(s) 995
BsuI GTATCC 1 cut(s) 667
BsuRI GGCC 5 cut(s) 135, 567, 720, 796, 803
BtgI CCRYGG 1 cut(s) 483
BtsCI GGATG 3 cut(s) 224, 281, 494
BtuMI TCGCGA 1 cut(s) 755
Cac8I GCNNGC 4 cut(s) 69, 414, 794, 837
CaiI CAGNNNCTG 2 cut(s) 167, 836
CfoI GCGC 2 cut(s) 98, 862
Cfr13I GGNCC 7 cut(s) 133, 134, 155, 565, 794, 802, 844
Csp6I GTAC 6 cut(s) 12, 25, 74, 177, 599, 1000
CviAII CATG 5 cut(s) 484, 524, 586, 1059, 1071
CviQI GTAC 6 cut(s) 12, 25, 74, 177, 599, 1000
DdeI CTNAG 5 cut(s) 129, 197, 210, 556, 734
DinI GGCGCC 1 cut(s) 861
DpnI GATC 5 cut(s) 312, 476, 590, 732, 927
DpnII GATC 5 cut(s) 310, 474, 588, 730, 925
DrdI GACNNNNNNGTC 1 cut(s) 773
DseDI GACNNNNNNGTC 1 cut(s) 773
Eco105I TACGTA 1 cut(s) 999
Eco130I CCWWGG 3 cut(s) 137, 483, 915
Eco24I GRGCYC 1 cut(s) 137
Eco47I GGWCC 2 cut(s) 155, 844
Eco88I CYCGRG 1 cut(s) 456
EcoO109I RGGNCCY 2 cut(s) 133, 802
EcoRI GAATTC 1 cut(s) 324
EcoRII CCWGG 4 cut(s) 567, 613, 659, 686
EcoT14I CCWWGG 3 cut(s) 137, 483, 915
EcoT22I ATGCAT 1 cut(s) 281
EcoT38I GRGCYC 1 cut(s) 137
EgeI GGCGCC 1 cut(s) 861
EheI GGCGCC 1 cut(s) 861
ErhI CCWWGG 3 cut(s) 137, 483, 915
FaeI CATG 5 cut(s) 487, 527, 589, 1062, 1074
FaqI GGGAC 1 cut(s) 168
FatI CATG 5 cut(s) 483, 523, 585, 1058, 1070
FauI CCCGC 2 cut(s) 785, 1009
FbaI TGATCA 3 cut(s) 474, 588, 925
FblI GTMKAC 2 cut(s) 237, 975
Fnu4HI GCNGC 4 cut(s) 110, 207, 285, 840
FokI GGATG 3 cut(s) 231, 288, 501
FriOI GRGCYC 1 cut(s) 137
Fsp4HI GCNGC 4 cut(s) 110, 207, 285, 840
FspBI CTAG 2 cut(s) 372, 939
GlaI GCGC 2 cut(s) 97, 861
GluI GCNGC 4 cut(s) 110, 207, 285, 840
GsaI CCCAGC 1 cut(s) 954
HaeII RGCGCY 1 cut(s) 863
HaeIII GGCC 5 cut(s) 135, 567, 720, 796, 803
HapII CCGG 2 cut(s) 272, 877
HhaI GCGC 2 cut(s) 98, 862
Hin1I GRCGYC 2 cut(s) 860, 972
Hin1II CATG 5 cut(s) 487, 527, 589, 1062, 1074
Hin6I GCGC 2 cut(s) 96, 860
HinP1I GCGC 2 cut(s) 96, 860
HincII GTYRAC 2 cut(s) 238, 976
HindII GTYRAC 2 cut(s) 238, 976
HinfI GANTC 4 cut(s) 40, 164, 452, 691
HpaII CCGG 2 cut(s) 272, 877
HphI GGTGA 3 cut(s) 154, 484, 1031
Hpy166II GTNNAC 5 cut(s) 27, 67, 238, 622, 976
Hpy188I TCNGA 3 cut(s) 593, 783, 984
Hpy188III TCNNGA 4 cut(s) 332, 456, 465, 754
Hpy8I GTNNAC 5 cut(s) 27, 67, 238, 622, 976
Hpy99I CGWCG 2 cut(s) 239, 977
HpyAV CCTTC 4 cut(s) 208, 314, 400, 491
HpyCH4III ACNGT 1 cut(s) 1054
HpyCH4IV ACGT 5 cut(s) 230, 624, 808, 972, 998
HpyCH4V TGCA 7 cut(s) 67, 279, 527, 725, 830, 1007, 1046
HpyF10VI GCNNNNNNNGC 2 cut(s) 836, 1013
HpyF3I CTNAG 5 cut(s) 129, 197, 210, 556, 734
HpySE526I ACGT 5 cut(s) 230, 624, 808, 972, 998
Hsp92I GRCGYC 2 cut(s) 860, 972
Hsp92II CATG 5 cut(s) 487, 527, 589, 1062, 1074
HspAI GCGC 2 cut(s) 96, 860
KasI GGCGCC 1 cut(s) 859
Ksp22I TGATCA 3 cut(s) 474, 588, 925
Kzo9I GATC 5 cut(s) 310, 474, 588, 730, 925
LmnI GCTCC 4 cut(s) 257, 409, 582, 919
Lsp1109I GCAGC 2 cut(s) 218, 826
LweI GCATC 1 cut(s) 266
MaeI CTAG 2 cut(s) 372, 939
MaeII ACGT 5 cut(s) 230, 624, 808, 972, 998
MaeIII GTNAC 3 cut(s) 764, 964, 1054
MalI GATC 5 cut(s) 312, 476, 590, 732, 927
MboI GATC 5 cut(s) 310, 474, 588, 730, 925
MboII GAAGA 3 cut(s) 92, 512, 1000
MfeI CAATTG 2 cut(s) 528, 822
MhlI GDGCHC 3 cut(s) 69, 137, 363
MluCI AATT 8 cut(s) 124, 324, 528, 671, 757, 822, 930, 993
Mly113I GGCGCC 1 cut(s) 860
MlyI GAGTC 2 cut(s) 34, 700
MnlI CCTC 3 cut(s) 339, 351, 978
Mph1103I ATGCAT 1 cut(s) 281
MroXI GAANNNNTTC 1 cut(s) 324
MseI TTAA 1 cut(s) 873
MspI CCGG 2 cut(s) 272, 877
MspR9I CCNGG 6 cut(s) 273, 569, 615, 661, 688, 878
MunI CAATTG 2 cut(s) 528, 822
Mva1269I GAATGC 2 cut(s) 451, 670
MvaI CCWGG 4 cut(s) 569, 615, 661, 688
MvnI CGCG 2 cut(s) 96, 755
MwoI GCNNNNNNNGC 2 cut(s) 836, 1013
NarI GGCGCC 1 cut(s) 860
NciI CCSGG 2 cut(s) 273, 878
NcoI CCATGG 1 cut(s) 483
NdeII GATC 5 cut(s) 310, 474, 588, 730, 925
NlaIII CATG 5 cut(s) 487, 527, 589, 1062, 1074
NlaIV GGNNCC 7 cut(s) 135, 156, 804, 846, 861, 921, 1051
NmuCI GTSAC 3 cut(s) 764, 964, 1054
NruI TCGCGA 1 cut(s) 755
NsiI ATGCAT 1 cut(s) 281
PaeR7I CTCGAG 1 cut(s) 456
PctI GAATGC 2 cut(s) 451, 670
PdmI GAANNNNTTC 1 cut(s) 324
PfeI GAWTC 2 cut(s) 164, 452
PflMI CCANNNNNTGG 1 cut(s) 489
PfoI TCCNGGA 3 cut(s) 271, 659, 686
PkrI GCNGC 4 cut(s) 111, 208, 286, 841
PleI GAGTC 2 cut(s) 34, 699
PluTI GGCGCC 1 cut(s) 863
PpsI GAGTC 2 cut(s) 34, 699
Ppu21I YACGTR 1 cut(s) 999
Psp6I CCWGG 4 cut(s) 567, 613, 659, 686
PspFI CCCAGC 1 cut(s) 950
PspGI CCWGG 4 cut(s) 567, 613, 659, 686
PspN4I GGNNCC 7 cut(s) 135, 156, 804, 846, 861, 921, 1051
PspOMI GGGCCC 1 cut(s) 133
PspPI GGNCC 7 cut(s) 133, 134, 155, 565, 794, 802, 844
PstI CTGCAG 1 cut(s) 1048
PstNI CAGNNNCTG 2 cut(s) 167, 836
RruI TCGCGA 1 cut(s) 755
RsaI GTAC 6 cut(s) 13, 26, 75, 178, 600, 1001
RsaNI GTAC 6 cut(s) 12, 25, 74, 177, 599, 1000
SalI GTCGAC 2 cut(s) 236, 974
SaqAI TTAA 1 cut(s) 873
SatI GCNGC 4 cut(s) 110, 207, 285, 840
Sau3AI GATC 5 cut(s) 310, 474, 588, 730, 925
Sau96I GGNCC 7 cut(s) 133, 134, 155, 565, 794, 802, 844
SchI GAGTC 2 cut(s) 34, 700
ScrFI CCNGG 6 cut(s) 273, 569, 615, 661, 688, 878
SduI GDGCHC 3 cut(s) 69, 137, 363
SfaNI GCATC 1 cut(s) 266
SfcI CTRYAG 1 cut(s) 1044
SfoI GGCGCC 1 cut(s) 861
Sfr274I CTCGAG 1 cut(s) 456
SinI GGWCC 2 cut(s) 155, 844
SlaI CTCGAG 1 cut(s) 456
SmlI CTYRAG 2 cut(s) 417, 456
SmoI CTYRAG 2 cut(s) 417, 456
SnaBI TACGTA 1 cut(s) 999
Sse9I AATT 8 cut(s) 124, 324, 528, 671, 757, 822, 930, 993
SsiI CCGC 6 cut(s) 94, 110, 285, 792, 842, 1016
SspDI GGCGCC 1 cut(s) 859
SspI AATATT 1 cut(s) 871
SspMI CTAG 2 cut(s) 372, 939
StyD4I CCNGG 6 cut(s) 271, 567, 613, 659, 686, 876
StyI CCWWGG 3 cut(s) 137, 483, 915
TaaI ACNGT 1 cut(s) 1054
TaiI ACGT 5 cut(s) 233, 627, 811, 975, 1001
TaqI TCGA 4 cut(s) 185, 237, 457, 975
TasI AATT 8 cut(s) 124, 324, 528, 671, 757, 822, 930, 993
TatI WGTACW 2 cut(s) 24, 598
TauI GCSGC 2 cut(s) 112, 287
TfiI GAWTC 2 cut(s) 164, 452
Tru1I TTAA 1 cut(s) 873
Tru9I TTAA 1 cut(s) 873
TseFI GTSAC 3 cut(s) 764, 964, 1054
TseI GCWGC 2 cut(s) 206, 839
Tsp45I GTSAC 3 cut(s) 764, 964, 1054
TspDTI ATGAA 2 cut(s) 512, 897
TspGWI ACGGA 3 cut(s) 29, 100, 665
Van91I CCANNNNNTGG 1 cut(s) 489
VneI GTGCAC 1 cut(s) 65
VpaK11BI GGWCC 2 cut(s) 155, 844
XapI RAATTY 3 cut(s) 324, 671, 757
XhoI CTCGAG 1 cut(s) 456
XmiI GTMKAC 2 cut(s) 237, 975
XmnI GAANNNNTTC 1 cut(s) 324
XspI CTAG 2 cut(s) 372, 939
ZraI GACGTC 1 cut(s) 973
Zsp2I ATGCAT 1 cut(s) 281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.