Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0006876

Physical Location & Seq

Genomic Coordinates Forward (+)

3441608 .. 3444710

Gene Structure 3103 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1047000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1302 bp

ATGGCGCACGGCGGTGGAGCAAGGCAGGTGAAACTGGACCGAGAGAGCGAGCTCAGAATCGAAGTCGGCAACGACGCCCCTCTCAAGCTCCGACTGCTCAACGGCACCGCTGAGATCTTCGGCACCGAGCTCCCACCTGATTTCTGGCTCACCTTCCCTCCCAGGCTCAAATTTGCTGTTTTGAATTGCATTTGTGTTGTTTTTACTTGGAATGGAGCAACAATTGAGATGGATGGCAGTACTGAAACCGATTACACTGCTGATGAGACCCCAAATATCAGTTATGTGAATGTGCACGCCGTACTGGAAGAACGGAGACACCGCGCTAAACCCTTGCCACCGGATGACCCCAATTCTCAGGGCCCAAGAGTGATTGTTGTGGGACCGACAGATTCTGGGAAAAGTACCTTGTCGAAAATGCTTCTTAGTTGGGCAGCTAAGAAGGGATGGAAACCTACTTTTGTCGACTTGGATATTGGACAGGGAGCTATAACAATTCCGGGATGCATTGCCGCTACTCCTATTGAAATGCCTATTGATCCGGTTGAAGGAATTCCTCTTGATATTCCTCTCGTGTATTTCTATGGGCACACAACTCCTAGTAATAATGTAGATTTATACAAAGTGCTTGTGAAGGAGCTAGCTCAAGTGGTAGAGAGACAAATTTCTGGGAATGCTGAATCTCGAGCTTCTGGAATGGTGATCAATACCATGGGATGGATAGAAGGTCAAGGCTACGAGTTGCTTCTTCATGCAATTGATACATTCAATGCCAATGTTGTCTTAGTTCTGGGCCAGGAAAAGCTTTGGAGCATGATCAGAAATGTGCTAAAGAACAAGCCTGGTGTGGACGTTGTAAAACTTCAAAAATCTGGGGGCGTTGTATCCAGGAATGCCAAATTCCGTCAAAAATCCAGGAGTCATAGGATAAGGGAATATTTCTATGGCCTTGCAAATGATCTGAGCCCACATTCTAACATCGCAAACTTCAGTGACTTTTCTGTCTTTCGAATTGGTGGCGGGCCACAGGCCCCACGTTCAGCTTTGCCAATTGGTGCAGAGCCTGCTGCAGACCCTCTAAGATTGGCGCCTGTGAATATTAACCGGGATTTGCTGCATACCATTCTCGCCGTTTCATTTGCCAAGGAGCCTGATCAAATTATTTCTAGTAATGTTGCTGGGTTTGTCTTTGTCACAGACGTCGACATTCAGAGGAAGACAATTACATACCTTGCACCTTCGGCAGGTGAGCTTCCAAGCAAGTATTTGATCGCAGGAACCGTGACATGGCTCGAAACGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000394 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006378 GO:0006379 GO:0006388 GO:0006396 GO:0006397 GO:0006399 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008033 GO:0008150 GO:0008152 GO:0008380 GO:0009791 GO:0009908 GO:0009987 GO:0010228 GO:0010467 GO:0016070 GO:0016071 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019205 GO:0022414 GO:0031123 GO:0031124 GO:0032501 GO:0032502 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043631 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0051731 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090567 GO:0099402 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

CLP1_N CLP1_P Clp1

Protein Analysis

434

Amino Acids

47.37

Weight (kDa)

6.27

Isoelectric Point (pI)

36.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CLP1_N	PF16573	11 - 109	9.8e-28	N-terminal beta-sandwich domain of polyadenylation factor
CLP1_P	PF16575	128 - 316	1.2e-71	mRNA cleavage and polyadenylation factor CLP1 P-loop
Clp1	PF06807	321 - 432	1e-33	Pre-mRNA cleavage complex II protein Clp1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006876)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04680 AT3G04680 AT3G04680
fragaria_vesca	FvH4_6g49260 FvH4_6g49260
malus_domestica	MD09G1046200.v1.1 MD09G1046500.v1.1 MD17G1047000.v1.1
prunus_persica	Prupe.3G272100_v2.0.a1
pyrus_communis	pycom09g03810 pycom09g04270 pycom111g03580 pycom111g03600 pycom111g03650 pycom17g04190
rosa_chinensis	RchiOBHm_Chr2g0169161
rosa_laevigata	RLG00000021838
rosa_multiflora	Rmu_ssc0000440.1_g000003
rosa_roxburghii	Rroxscaffold_2G00082380
rosa_rugosa	Rorug02G0537700 Rorug02G0537800
rosa_samantha	Rh2AG609300 Rh2BG622300 Rh2CG591000 Rh2DG633000
rosa_wichuraiana	Rw2G050540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	16, 1235
AasI	GACNNNNNNGTC	1 cut(s)	1001
AatII	GACGTC	1 cut(s)	1203
Acc36I	ACCTGC	2 cut(s)	16, 1235
AccB1I	GGYRCC	3 cut(s)	104, 122, 1087
AccB7I	CCANNNNNTGG	1 cut(s)	717
AccI	GTMKAC	2 cut(s)	465, 1203
AccII	CGCG	1 cut(s)	324
AciI	CCGC	5 cut(s)	12, 108, 322, 513, 1020
AclWI	GGATC	1 cut(s)	533
AcsI	RAATTY	4 cut(s)	170, 552, 663, 899
AcuI	CTGAAG	1 cut(s)	973
AcyI	GRCGYC	3 cut(s)	75, 1088, 1200
AfaI	GTAC	3 cut(s)	241, 303, 406
AfiI	CCNNNNNNNGG	4 cut(s)	548, 717, 1244, 1287
AgsI	TTSAA	5 cut(s)	184, 527, 548, 769, 866
AjnI	CCWGG	5 cut(s)	161, 795, 841, 887, 914
AleI	CACNNNNGTG	1 cut(s)	12
Alw21I	GWGCWC	3 cut(s)	54, 132, 297
Alw26I	GTCTC	3 cut(s)	260, 310, 652
Alw44I	GTGCAC	1 cut(s)	293
AlwI	GGATC	1 cut(s)	533
AlwNI	CAGNNNCTG	2 cut(s)	395, 1064
Ama87I	CYCGRG	1 cut(s)	684
AoxI	GGCC	5 cut(s)	361, 793, 946, 1022, 1029
ApaI	GGGCCC	1 cut(s)	365
ApaLI	GTGCAC	1 cut(s)	293
ApeKI	GCWGC	3 cut(s)	434, 1067, 1114
ApoI	RAATTY	4 cut(s)	170, 552, 663, 899
Asp700I	GAANNNNTTC	1 cut(s)	552
AspLEI	GCGC	3 cut(s)	7, 326, 1090
AspS9I	GGNCC	7 cut(s)	37, 361, 362, 383, 793, 1022, 1030
AsuC2I	CCSGG	2 cut(s)	501, 1106
AsuHPI	GGTGA	4 cut(s)	40, 142, 712, 1259
AsuII	TTCGAA	1 cut(s)	1009
AsuNHI	GCTAGC	1 cut(s)	640
AvaI	CYCGRG	1 cut(s)	684
AvaII	GGWCC	2 cut(s)	37, 383
BaeGI	GKGCMC	3 cut(s)	297, 365, 591
BanI	GGYRCC	3 cut(s)	104, 122, 1087
BanII	GRGCYC	4 cut(s)	54, 132, 365, 968
BauI	CACGAG	1 cut(s)	572
BbsI	GAAGAC	1 cut(s)	1223
Bbv12I	GWGCWC	3 cut(s)	54, 132, 297
BbvI	GCAGC	3 cut(s)	446, 1054, 1101
BccI	CCATC	4 cut(s)	223, 227, 441, 711
BceAI	ACGGC	4 cut(s)	25, 118, 284, 1115
BcgI	CGANNNNNNTGC	2 cut(s)	239, 273
BciT130I	CCWGG	5 cut(s)	163, 797, 843, 889, 916
BciVI	GTATCC	1 cut(s)	895
BclI	TGATCA	3 cut(s)	702, 816, 1153
BcnI	CCSGG	2 cut(s)	501, 1106
BcoDI	GTCTC	3 cut(s)	260, 310, 652
BfaI	CTAG	3 cut(s)	600, 641, 1167
BfmI	CTRYAG	1 cut(s)	1068
BfoI	RGCGCY	1 cut(s)	1091
BfuAI	ACCTGC	2 cut(s)	16, 1235
BfuI	GTATCC	1 cut(s)	895
BglII	AGATCT	1 cut(s)	114
BisI	GCNGC	4 cut(s)	435, 513, 1068, 1115
BlsI	GCNGC	4 cut(s)	436, 514, 1069, 1116
BmcAI	AGTACT	1 cut(s)	241
Bme1390I	CCNGG	7 cut(s)	163, 501, 797, 843, 889, 916, 1106
Bme18I	GGWCC	2 cut(s)	37, 383
BmeT110I	CYCGRG	1 cut(s)	684
BmgT120I	GGNCC	7 cut(s)	37, 361, 362, 383, 793, 1022, 1030
BmiI	GGNNCC	8 cut(s)	106, 124, 363, 384, 1032, 1089, 1149, 1279
BmrFI	CCNGG	7 cut(s)	163, 501, 797, 843, 889, 916, 1106
BmsI	GCATC	1 cut(s)	494
BmtI	GCTAGC	1 cut(s)	644
BpiI	GAAGAC	1 cut(s)	1223
Bpu14I	TTCGAA	1 cut(s)	1009
BpuEI	CTTGAG	2 cut(s)	68, 630
BpuMI	CCSGG	2 cut(s)	501, 1106
BsaHI	GRCGYC	3 cut(s)	75, 1088, 1200
BsaI	GGTCTC	1 cut(s)	260
BsaJI	CCNNGG	3 cut(s)	161, 711, 1143
BsaWI	WCCGGW	2 cut(s)	340, 541
BsaXI	ACNNNNNCTCC	2 cut(s)	142, 172
Bsc4I	CCNNNNNNNGG	4 cut(s)	548, 717, 1244, 1287
Bse1I	ACTGG	2 cut(s)	39, 309
Bse3DI	GCAATG	1 cut(s)	507
BseBI	CCWGG	5 cut(s)	163, 797, 843, 889, 916
BseDI	CCNNGG	3 cut(s)	161, 711, 1143
BseGI	GGATG	5 cut(s)	238, 349, 452, 509, 722
BseLI	CCNNNNNNNGG	4 cut(s)	548, 717, 1244, 1287
BseMI	GCAATG	1 cut(s)	507
BseMII	CTCAG	4 cut(s)	67, 102, 371, 953
BseNI	ACTGG	2 cut(s)	39, 309
BseSI	GKGCMC	3 cut(s)	297, 365, 591
BseXI	GCAGC	3 cut(s)	446, 1054, 1101
BseYI	CCCAGC	1 cut(s)	1178
BsgI	GTGCAG	1 cut(s)	1077
Bsh1236I	CGCG	1 cut(s)	324
BshFI	GGCC	5 cut(s)	363, 795, 948, 1024, 1031
BshNI	GGYRCC	3 cut(s)	104, 122, 1087
BsiHKAI	GWGCWC	3 cut(s)	54, 132, 297
BsiHKCI	CYCGRG	1 cut(s)	684
BsiSI	CCGG	4 cut(s)	341, 500, 542, 1105
BslFI	GGGAC	1 cut(s)	396
BslI	CCNNNNNNNGG	4 cut(s)	548, 717, 1244, 1287
BsmAI	GTCTC	3 cut(s)	260, 310, 652
BsmFI	GGGAC	1 cut(s)	396
BsmI	GAATGC	2 cut(s)	679, 898
BsnI	GGCC	5 cut(s)	363, 795, 948, 1024, 1031
Bso31I	GGTCTC	1 cut(s)	260
BsoBI	CYCGRG	1 cut(s)	684
Bsp119I	TTCGAA	1 cut(s)	1009
Bsp120I	GGGCCC	1 cut(s)	361
Bsp1286I	GDGCHC	6 cut(s)	54, 132, 297, 365, 591, 968
Bsp143I	GATC	7 cut(s)	114, 538, 702, 816, 958, 1153, 1269
Bsp19I	CCATGG	1 cut(s)	711
BspACI	CCGC	5 cut(s)	12, 108, 322, 513, 1020
BspANI	GGCC	5 cut(s)	363, 795, 948, 1024, 1031
BspCNI	CTCAG	4 cut(s)	66, 103, 370, 954
BspFNI	CGCG	1 cut(s)	324
BspLI	GGNNCC	8 cut(s)	106, 124, 363, 384, 1032, 1089, 1149, 1279
BspMAI	CTGCAG	1 cut(s)	1072
BspMI	ACCTGC	2 cut(s)	16, 1235
BspOI	GCTAGC	1 cut(s)	644
BspPI	GGATC	1 cut(s)	533
BspT104I	TTCGAA	1 cut(s)	1009
BspT107I	GGYRCC	3 cut(s)	104, 122, 1087
BspTNI	GGTCTC	1 cut(s)	260
BsrDI	GCAATG	1 cut(s)	507
BsrI	ACTGG	2 cut(s)	39, 309
BssECI	CCNNGG	3 cut(s)	161, 711, 1143
BssMI	GATC	7 cut(s)	114, 538, 702, 816, 958, 1153, 1269
BssNI	GRCGYC	3 cut(s)	75, 1088, 1200
BssSI	CACGAG	1 cut(s)	572
BssT1I	CCWWGG	2 cut(s)	711, 1143
Bst2BI	CACGAG	1 cut(s)	572
Bst2UI	CCWGG	5 cut(s)	163, 797, 843, 889, 916
Bst4CI	ACNGT	1 cut(s)	1282
BstACI	GRCGYC	3 cut(s)	75, 1088, 1200
BstAPI	GCANNNNNTGC	1 cut(s)	1064
BstBI	TTCGAA	1 cut(s)	1009
BstC8I	GCNNGC	5 cut(s)	50, 297, 642, 1022, 1065
BstDEI	CTNAG	8 cut(s)	53, 111, 357, 425, 438, 784, 962, 1079
BstDSI	CCRYGG	1 cut(s)	711
BstENI	CCTNNNNNAGG	1 cut(s)	1242
BstF5I	GGATG	5 cut(s)	238, 349, 452, 509, 722
BstFNI	CGCG	1 cut(s)	324
BstH2I	RGCGCY	1 cut(s)	1091
BstHHI	GCGC	3 cut(s)	7, 326, 1090
BstKTI	GATC	7 cut(s)	117, 541, 705, 819, 961, 1156, 1272
BstMAI	GTCTC	3 cut(s)	260, 310, 652
BstMBI	GATC	7 cut(s)	114, 538, 702, 816, 958, 1153, 1269
BstMWI	GCNNNNNNNGC	3 cut(s)	94, 1064, 1241
BstNI	CCWGG	5 cut(s)	163, 797, 843, 889, 916
BstSCI	CCNGG	7 cut(s)	161, 499, 795, 841, 887, 914, 1104
BstSFI	CTRYAG	1 cut(s)	1068
BstSLI	GKGCMC	3 cut(s)	297, 365, 591
BstUI	CGCG	1 cut(s)	324
BstV1I	GCAGC	3 cut(s)	446, 1054, 1101
BstV2I	GAAGAC	1 cut(s)	1223
BstX2I	RGATCY	1 cut(s)	114
BstYI	RGATCY	1 cut(s)	114
BsuI	GTATCC	1 cut(s)	895
BsuRI	GGCC	5 cut(s)	363, 795, 948, 1024, 1031
BtgI	CCRYGG	1 cut(s)	711
BtgZI	GCGATG	1 cut(s)	964
BtsCI	GGATG	5 cut(s)	238, 349, 452, 509, 722
BtsI	GCAGTG	1 cut(s)	255
BtsIMutI	CAGTG	2 cut(s)	255, 997
BveI	ACCTGC	2 cut(s)	16, 1235
Cac8I	GCNNGC	5 cut(s)	50, 297, 642, 1022, 1065
CaiI	CAGNNNCTG	2 cut(s)	395, 1064
CfoI	GCGC	3 cut(s)	7, 326, 1090
Cfr13I	GGNCC	7 cut(s)	37, 361, 362, 383, 793, 1022, 1030
CseI	GACGC	1 cut(s)	83
Csp6I	GTAC	3 cut(s)	240, 302, 405
CviAII	CATG	4 cut(s)	712, 752, 814, 1287
CviQI	GTAC	3 cut(s)	240, 302, 405
DdeI	CTNAG	8 cut(s)	53, 111, 357, 425, 438, 784, 962, 1079
DinI	GGCGCC	1 cut(s)	1089
DpnI	GATC	7 cut(s)	116, 540, 704, 818, 960, 1155, 1271
DpnII	GATC	7 cut(s)	114, 538, 702, 816, 958, 1153, 1269
DrdI	GACNNNNNNGTC	1 cut(s)	1001
DseDI	GACNNNNNNGTC	1 cut(s)	1001
Ecl136II	GAGCTC	2 cut(s)	52, 130
Eco130I	CCWWGG	2 cut(s)	711, 1143
Eco24I	GRGCYC	4 cut(s)	54, 132, 365, 968
Eco31I	GGTCTC	1 cut(s)	260
Eco47I	GGWCC	2 cut(s)	37, 383
Eco53kI	GAGCTC	2 cut(s)	52, 130
Eco57I	CTGAAG	1 cut(s)	973
Eco88I	CYCGRG	1 cut(s)	684
EcoICRI	GAGCTC	2 cut(s)	52, 130
EcoNI	CCTNNNNNAGG	1 cut(s)	1242
EcoO109I	RGGNCCY	2 cut(s)	361, 1030
EcoRI	GAATTC	1 cut(s)	552
EcoRII	CCWGG	5 cut(s)	161, 795, 841, 887, 914
EcoT14I	CCWWGG	2 cut(s)	711, 1143
EcoT22I	ATGCAT	1 cut(s)	509
EcoT38I	GRGCYC	4 cut(s)	54, 132, 365, 968
EgeI	GGCGCC	1 cut(s)	1089
EheI	GGCGCC	1 cut(s)	1089
ErhI	CCWWGG	2 cut(s)	711, 1143
FaeI	CATG	4 cut(s)	715, 755, 817, 1290
FaqI	GGGAC	1 cut(s)	396
FatI	CATG	4 cut(s)	711, 751, 813, 1286
FauI	CCCGC	1 cut(s)	1013
FbaI	TGATCA	3 cut(s)	702, 816, 1153
FblI	GTMKAC	2 cut(s)	465, 1203
Fnu4HI	GCNGC	4 cut(s)	435, 513, 1068, 1115
FokI	GGATG	5 cut(s)	245, 356, 459, 516, 729
FriOI	GRGCYC	4 cut(s)	54, 132, 365, 968
Fsp4HI	GCNGC	4 cut(s)	435, 513, 1068, 1115
FspBI	CTAG	3 cut(s)	600, 641, 1167
GlaI	GCGC	3 cut(s)	6, 325, 1089
GluI	GCNGC	4 cut(s)	435, 513, 1068, 1115
GsaI	CCCAGC	1 cut(s)	1182
HaeII	RGCGCY	1 cut(s)	1091
HaeIII	GGCC	5 cut(s)	363, 795, 948, 1024, 1031
HapII	CCGG	4 cut(s)	341, 500, 542, 1105
HgaI	GACGC	1 cut(s)	83
HhaI	GCGC	3 cut(s)	7, 326, 1090
Hin1I	GRCGYC	3 cut(s)	75, 1088, 1200
Hin1II	CATG	4 cut(s)	715, 755, 817, 1290
Hin6I	GCGC	3 cut(s)	5, 324, 1088
HinP1I	GCGC	3 cut(s)	5, 324, 1088
HincII	GTYRAC	2 cut(s)	466, 1204
HindII	GTYRAC	2 cut(s)	466, 1204
HindIII	AAGCTT	1 cut(s)	803
HinfI	GANTC	4 cut(s)	57, 392, 680, 919
HpaII	CCGG	4 cut(s)	341, 500, 542, 1105
HphI	GGTGA	4 cut(s)	40, 142, 712, 1259
Hpy166II	GTNNAC	4 cut(s)	295, 466, 850, 1204
Hpy188I	TCNGA	5 cut(s)	56, 92, 821, 963, 1212
Hpy188III	TCNNGA	3 cut(s)	560, 684, 693
Hpy8I	GTNNAC	4 cut(s)	295, 466, 850, 1204
Hpy99I	CGWCG	2 cut(s)	77, 1205
HpyAV	CCTTC	6 cut(s)	163, 436, 542, 628, 719, 1248
HpyCH4III	ACNGT	1 cut(s)	1282
HpyCH4IV	ACGT	4 cut(s)	852, 1036, 1200, 1298
HpyCH4V	TGCA	9 cut(s)	189, 295, 507, 755, 953, 1058, 1070, 1117, 1235
HpyF10VI	GCNNNNNNNGC	3 cut(s)	94, 1064, 1241
HpyF3I	CTNAG	8 cut(s)	53, 111, 357, 425, 438, 784, 962, 1079
HpySE526I	ACGT	4 cut(s)	852, 1036, 1200, 1298
Hsp92I	GRCGYC	3 cut(s)	75, 1088, 1200
Hsp92II	CATG	4 cut(s)	715, 755, 817, 1290
HspAI	GCGC	3 cut(s)	5, 324, 1088
KasI	GGCGCC	1 cut(s)	1087
Ksp22I	TGATCA	3 cut(s)	702, 816, 1153
Kzo9I	GATC	7 cut(s)	114, 538, 702, 816, 958, 1153, 1269
LmnI	GCTCC	8 cut(s)	17, 93, 135, 215, 485, 637, 810, 1147
Lsp1109I	GCAGC	3 cut(s)	446, 1054, 1101
LweI	GCATC	1 cut(s)	494
MaeI	CTAG	3 cut(s)	600, 641, 1167
MaeII	ACGT	4 cut(s)	852, 1036, 1200, 1298
MaeIII	GTNAC	3 cut(s)	992, 1192, 1282
MalI	GATC	7 cut(s)	116, 540, 704, 818, 960, 1155, 1271
MboI	GATC	7 cut(s)	114, 538, 702, 816, 958, 1153, 1269
MboII	GAAGA	4 cut(s)	109, 320, 740, 1228
MfeI	CAATTG	3 cut(s)	222, 756, 1050
MflI	RGATCY	1 cut(s)	114
MhlI	GDGCHC	6 cut(s)	54, 132, 297, 365, 591, 968
Mly113I	GGCGCC	1 cut(s)	1088
MlyI	GAGTC	1 cut(s)	928
MmeI	TCCRAC	1 cut(s)	115
MnlI	CCTC	6 cut(s)	90, 168, 567, 579, 1086, 1206
Mph1103I	ATGCAT	1 cut(s)	509
MroXI	GAANNNNTTC	1 cut(s)	552
MseI	TTAA	1 cut(s)	1101
MslI	CAYNNNNRTG	1 cut(s)	12
MspA1I	CMGCKG	1 cut(s)	110
MspI	CCGG	4 cut(s)	341, 500, 542, 1105
MspR9I	CCNGG	7 cut(s)	163, 501, 797, 843, 889, 916, 1106
MunI	CAATTG	3 cut(s)	222, 756, 1050
Mva1269I	GAATGC	2 cut(s)	679, 898
MvaI	CCWGG	5 cut(s)	163, 797, 843, 889, 916
MvnI	CGCG	1 cut(s)	324
MwoI	GCNNNNNNNGC	3 cut(s)	94, 1064, 1241
NarI	GGCGCC	1 cut(s)	1088
NciI	CCSGG	2 cut(s)	501, 1106
NcoI	CCATGG	1 cut(s)	711
NdeII	GATC	7 cut(s)	114, 538, 702, 816, 958, 1153, 1269
NheI	GCTAGC	1 cut(s)	640
NlaIII	CATG	4 cut(s)	715, 755, 817, 1290
NlaIV	GGNNCC	8 cut(s)	106, 124, 363, 384, 1032, 1089, 1149, 1279
NmuCI	GTSAC	3 cut(s)	992, 1192, 1282
NsiI	ATGCAT	1 cut(s)	509
NspV	TTCGAA	1 cut(s)	1009
OliI	CACNNNNGTG	1 cut(s)	12
PaeR7I	CTCGAG	1 cut(s)	684
PaqCI	CACCTGC	2 cut(s)	16, 1235
PcsI	WCGNNNNNNNCGW	1 cut(s)	1278
PctI	GAATGC	2 cut(s)	679, 898
PdmI	GAANNNNTTC	1 cut(s)	552
PfeI	GAWTC	3 cut(s)	57, 392, 680
PflMI	CCANNNNNTGG	1 cut(s)	717
PfoI	TCCNGGA	3 cut(s)	499, 887, 914
PkrI	GCNGC	4 cut(s)	436, 514, 1069, 1116
PleI	GAGTC	1 cut(s)	927
PluTI	GGCGCC	1 cut(s)	1091
PpsI	GAGTC	1 cut(s)	927
Psp124BI	GAGCTC	2 cut(s)	54, 132
Psp6I	CCWGG	5 cut(s)	161, 795, 841, 887, 914
PspFI	CCCAGC	1 cut(s)	1178
PspGI	CCWGG	5 cut(s)	161, 795, 841, 887, 914
PspN4I	GGNNCC	8 cut(s)	106, 124, 363, 384, 1032, 1089, 1149, 1279
PspOMI	GGGCCC	1 cut(s)	361
PspPI	GGNCC	7 cut(s)	37, 361, 362, 383, 793, 1022, 1030
PstI	CTGCAG	1 cut(s)	1072
PstNI	CAGNNNCTG	2 cut(s)	395, 1064
PsuI	RGATCY	1 cut(s)	114
RsaI	GTAC	3 cut(s)	241, 303, 406
RsaNI	GTAC	3 cut(s)	240, 302, 405
RseI	CAYNNNNRTG	1 cut(s)	12
SacI	GAGCTC	2 cut(s)	54, 132
SalI	GTCGAC	2 cut(s)	464, 1202
SaqAI	TTAA	1 cut(s)	1101
SatI	GCNGC	4 cut(s)	435, 513, 1068, 1115
Sau3AI	GATC	7 cut(s)	114, 538, 702, 816, 958, 1153, 1269
Sau96I	GGNCC	7 cut(s)	37, 361, 362, 383, 793, 1022, 1030
ScaI	AGTACT	1 cut(s)	241
SchI	GAGTC	1 cut(s)	928
ScrFI	CCNGG	7 cut(s)	163, 501, 797, 843, 889, 916, 1106
SduI	GDGCHC	6 cut(s)	54, 132, 297, 365, 591, 968
SfaNI	GCATC	1 cut(s)	494
SfcI	CTRYAG	1 cut(s)	1068
SfoI	GGCGCC	1 cut(s)	1089
Sfr274I	CTCGAG	1 cut(s)	684
SfuI	TTCGAA	1 cut(s)	1009
SinI	GGWCC	2 cut(s)	37, 383
SlaI	CTCGAG	1 cut(s)	684
SmiMI	CAYNNNNRTG	1 cut(s)	12
SmlI	CTYRAG	3 cut(s)	83, 645, 684
SmoI	CTYRAG	3 cut(s)	83, 645, 684
SsiI	CCGC	5 cut(s)	12, 108, 322, 513, 1020
SspDI	GGCGCC	1 cut(s)	1087
SspI	AATATT	2 cut(s)	938, 1099
SspMI	CTAG	3 cut(s)	600, 641, 1167
SstI	GAGCTC	2 cut(s)	54, 132
StyD4I	CCNGG	7 cut(s)	161, 499, 795, 841, 887, 914, 1104
StyI	CCWWGG	2 cut(s)	711, 1143
TaaI	ACNGT	1 cut(s)	1282
TaiI	ACGT	4 cut(s)	855, 1039, 1203, 1301
TaqI	TCGA	7 cut(s)	60, 413, 465, 685, 1009, 1203, 1293
TaqII	GACCGA	2 cut(s)	54, 400
TatI	WGTACW	1 cut(s)	239
TauI	GCSGC	1 cut(s)	515
TfiI	GAWTC	3 cut(s)	57, 392, 680
Tru1I	TTAA	1 cut(s)	1101
Tru9I	TTAA	1 cut(s)	1101
TscAI	CASTG	2 cut(s)	262, 997
TseFI	GTSAC	3 cut(s)	992, 1192, 1282
TseI	GCWGC	3 cut(s)	434, 1067, 1114
Tsp45I	GTSAC	3 cut(s)	992, 1192, 1282
TspDTI	ATGAA	2 cut(s)	740, 1125
TspGWI	ACGGA	2 cut(s)	328, 893
TspRI	CASTG	2 cut(s)	262, 997
Van91I	CCANNNNNTGG	1 cut(s)	717
VneI	GTGCAC	1 cut(s)	293
VpaK11BI	GGWCC	2 cut(s)	37, 383
XagI	CCTNNNNNAGG	1 cut(s)	1242
XapI	RAATTY	4 cut(s)	170, 552, 663, 899
XcmI	CCANNNNNNNNNTGG	1 cut(s)	141
XhoI	CTCGAG	1 cut(s)	684
XmiI	GTMKAC	2 cut(s)	465, 1203
XmnI	GAANNNNTTC	1 cut(s)	552
XspI	CTAG	3 cut(s)	600, 641, 1167
ZraI	GACGTC	1 cut(s)	1201
ZrmI	AGTACT	1 cut(s)	241
Zsp2I	ATGCAT	1 cut(s)	509

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.