Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0006876

Physical Location & Seq

Genomic Coordinates Forward (+)

3017377 .. 3020481

Gene Structure 3105 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1046200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1236 bp

ATGGCGCACGGCGGCGGACCAAGGCAGGTGAAACTGGACCGAGAGAGCGAGCTCAGAATCGAAGTCGGCTACGACGCCCCTCTCAAGCTCCGCCTGCTCAGCGGCACCGCTGAGATCTTCGGCACCGAGCTCCCCCCTGATTTCTGGCTCACCTTCCCGCCCAGGCTCAAATTTGCTGTTTTTACTTTGAACGGAGCAACAATTGAGATGGAGGGCAGTACGGAAACCGAGTACACGGCTGATGAGACTCCAAATATCAGCTATGTGAATGTGCACGCCGTACTGGAAGAACGGAGACACCGCGCTAAACCCTTGCCGCCCGATGACCCCAATTCTCAGGGCCCTAGGGTGATTGTTGTGGGACCAACAGATTCTGGGAAAAGTACCTTGTCGAAAATGCTTCTTAGTTGGGCAGCTAAGAAGGGATGGAAACCTACTTTCGTCGACTTGGATATTGGACAAGGAGCTATAACAATTCCAGGATGTATTGCCGCTACTCCTATTGAAATGCCTATTGATCCGGTTGAAGGAATTCCTCTTGATATACCTCTCGTTTATTTCTATGGGCACACAACTCCTAGTAATAATGTAGATTTATACAAAGTGCTTGTGAAGGAGCTTGCTCAAGTGGTAGAAAGACAACTTTCTGGGAATGCTGAATCTCGAGCTTCTGGAATGGTGATCAATACCATGGGATGGATAGAAGGTCAAGGCTACGAGTTGCTTCTTCATGCAATTGATACATTCAATGCCAATGTTGTCTTAGTTCTAGGCCAGGAAAAACTTTGGAGCATGATCAGAAATGTACTAAAGAACAAGCCTGGTGTGGACGTTGTAAAACTTCAAAAATCTGGGGGTGTTGTATCCAGGAATGCCAAATTCCGTCAAAAATCCAGGAGTCATAGGATAAGGGAGTATTTCTATGGCCTTGCAAATGATCTCAGCCCACATTCTAATATTGCGAATTTTAGTGACTTTTCTGTCTTTCGGATTGGTGGCGGGCCACAGGCCCCACGTTCGGCTTTGCCAATTGGTGCAGAGCCTGCTGCAGACCCTACAAGATTGGCGCCTGTGAATATTAACCGGGATTTGCTGCATACCGTTCTTGCTGTTTCATTTGCCAAGGAGCCTGATCAAATTATTTCTAGGAAGACAATTACGTACCTTGCACCATCGGCGGGGGAGCTTCCAAGCAAGTATTTGATTGCAGGAACCGTGACATGGCTTGAAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000394 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006378 GO:0006379 GO:0006388 GO:0006396 GO:0006397 GO:0006399 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008033 GO:0008150 GO:0008152 GO:0008380 GO:0009791 GO:0009908 GO:0009987 GO:0010228 GO:0010467 GO:0016070 GO:0016071 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019205 GO:0022414 GO:0031123 GO:0031124 GO:0032501 GO:0032502 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043631 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0051731 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090567 GO:0099402 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

CLP1_N CLP1_P Clp1

Protein Analysis

412

Amino Acids

45.01

Weight (kDa)

6.73

Isoelectric Point (pI)

38.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CLP1_N	PF16573	11 - 102	8.3e-31	N-terminal beta-sandwich domain of polyadenylation factor
CLP1_P	PF16575	121 - 309	6.3e-72	mRNA cleavage and polyadenylation factor CLP1 P-loop
Clp1	PF06807	314 - 410	2e-17	Pre-mRNA cleavage complex II protein Clp1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006876)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04680 AT3G04680 AT3G04680
fragaria_vesca	FvH4_6g49260 FvH4_6g49260
malus_domestica	MD09G1046200.v1.1 MD09G1046500.v1.1 MD17G1047000.v1.1
prunus_persica	Prupe.3G272100_v2.0.a1
pyrus_communis	pycom09g03810 pycom09g04270 pycom111g03580 pycom111g03600 pycom111g03650 pycom17g04190
rosa_chinensis	RchiOBHm_Chr2g0169161
rosa_laevigata	RLG00000021838
rosa_multiflora	Rmu_ssc0000440.1_g000003
rosa_roxburghii	Rroxscaffold_2G00082380
rosa_rugosa	Rorug02G0537700 Rorug02G0537800
rosa_samantha	Rh2AG609300 Rh2BG622300 Rh2CG591000 Rh2DG633000
rosa_wichuraiana	Rw2G050540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	16
AasI	GACNNNNNNGTC	1 cut(s)	980
Acc36I	ACCTGC	1 cut(s)	16
AccB1I	GGYRCC	3 cut(s)	104, 122, 1066
AccB7I	CCANNNNNTGG	1 cut(s)	696
AccI	GTMKAC	1 cut(s)	444
AccII	CGCG	1 cut(s)	303
AclWI	GGATC	1 cut(s)	512
AcsI	RAATTY	4 cut(s)	170, 531, 878, 964
AcyI	GRCGYC	2 cut(s)	75, 1067
AfaI	GTAC	6 cut(s)	220, 233, 282, 385, 807, 1163
AfiI	CCNNNNNNNGG	5 cut(s)	527, 696, 1018, 1178, 1221
AgsI	TTSAA	6 cut(s)	190, 506, 527, 748, 845, 1229
AjnI	CCWGG	6 cut(s)	161, 478, 774, 820, 866, 893
AluBI	AGCT	9 cut(s)	52, 88, 130, 261, 416, 467, 619, 668, 1186
AluI	AGCT	9 cut(s)	52, 88, 130, 261, 416, 467, 619, 668, 1186
Alw21I	GWGCWC	3 cut(s)	54, 132, 276
Alw26I	GTCTC	2 cut(s)	239, 289
Alw44I	GTGCAC	1 cut(s)	272
AlwI	GGATC	1 cut(s)	512
AlwNI	CAGNNNCTG	2 cut(s)	374, 1043
Ama87I	CYCGRG	1 cut(s)	663
AoxI	GGCC	5 cut(s)	340, 772, 925, 1001, 1008
ApaI	GGGCCC	1 cut(s)	344
ApaLI	GTGCAC	1 cut(s)	272
ApeKI	GCWGC	3 cut(s)	413, 1046, 1093
ApoI	RAATTY	4 cut(s)	170, 531, 878, 964
Asp700I	GAANNNNTTC	1 cut(s)	531
AspA2I	CCTAGG	1 cut(s)	344
AspLEI	GCGC	3 cut(s)	7, 305, 1069
AspS9I	GGNCC	7 cut(s)	17, 37, 340, 341, 362, 1001, 1009
AsuC2I	CCSGG	1 cut(s)	1085
AsuHPI	GGTGA	4 cut(s)	40, 142, 361, 691
AvaI	CYCGRG	1 cut(s)	663
AvaII	GGWCC	3 cut(s)	17, 37, 362
AvrII	CCTAGG	1 cut(s)	344
BaeGI	GKGCMC	3 cut(s)	276, 344, 570
BanI	GGYRCC	3 cut(s)	104, 122, 1066
BanII	GRGCYC	3 cut(s)	54, 132, 344
BbsI	GAAGAC	1 cut(s)	1157
Bbv12I	GWGCWC	3 cut(s)	54, 132, 276
BbvI	GCAGC	3 cut(s)	425, 1033, 1080
BccI	CCATC	4 cut(s)	202, 420, 690, 1180
BceAI	ACGGC	3 cut(s)	25, 252, 263
BciT130I	CCWGG	6 cut(s)	163, 480, 776, 822, 868, 895
BciVI	GTATCC	1 cut(s)	874
BclI	TGATCA	3 cut(s)	681, 795, 1132
BcnI	CCSGG	1 cut(s)	1085
BcoDI	GTCTC	2 cut(s)	239, 289
BfaI	CTAG	4 cut(s)	345, 579, 770, 1146
BfmI	CTRYAG	1 cut(s)	1047
BfoI	RGCGCY	1 cut(s)	1070
BfuAI	ACCTGC	1 cut(s)	16
BfuI	GTATCC	1 cut(s)	874
BglII	AGATCT	1 cut(s)	114
BisI	GCNGC	7 cut(s)	13, 103, 317, 414, 492, 1047, 1094
BlnI	CCTAGG	1 cut(s)	344
BlpI	GCTNAGC	1 cut(s)	98
BlsI	GCNGC	7 cut(s)	14, 104, 318, 415, 493, 1048, 1095
Bme1390I	CCNGG	7 cut(s)	163, 480, 776, 822, 868, 895, 1085
Bme18I	GGWCC	3 cut(s)	17, 37, 362
BmeT110I	CYCGRG	1 cut(s)	663
BmgT120I	GGNCC	7 cut(s)	17, 37, 340, 341, 362, 1001, 1009
BmiI	GGNNCC	8 cut(s)	106, 124, 342, 363, 1011, 1068, 1128, 1213
BmrFI	CCNGG	7 cut(s)	163, 480, 776, 822, 868, 895, 1085
BpiI	GAAGAC	1 cut(s)	1157
Bpu1102I	GCTNAGC	1 cut(s)	98
BpuEI	CTTGAG	2 cut(s)	68, 609
BpuMI	CCSGG	1 cut(s)	1085
BsaAI	YACGTR	1 cut(s)	1161
BsaHI	GRCGYC	2 cut(s)	75, 1067
BsaJI	CCNNGG	5 cut(s)	20, 161, 344, 690, 1122
BsaWI	WCCGGW	1 cut(s)	520
Bsc4I	CCNNNNNNNGG	5 cut(s)	527, 696, 1018, 1178, 1221
Bse1I	ACTGG	2 cut(s)	39, 288
BseBI	CCWGG	6 cut(s)	163, 480, 776, 822, 868, 895
BseDI	CCNNGG	5 cut(s)	20, 161, 344, 690, 1122
BseGI	GGATG	3 cut(s)	431, 488, 701
BseLI	CCNNNNNNNGG	5 cut(s)	527, 696, 1018, 1178, 1221
BseMII	CTCAG	5 cut(s)	67, 102, 112, 350, 955
BseNI	ACTGG	2 cut(s)	39, 288
BseSI	GKGCMC	3 cut(s)	276, 344, 570
BseXI	GCAGC	3 cut(s)	425, 1033, 1080
BsgI	GTGCAG	1 cut(s)	1056
Bsh1236I	CGCG	1 cut(s)	303
BshFI	GGCC	5 cut(s)	342, 774, 927, 1003, 1010
BshNI	GGYRCC	3 cut(s)	104, 122, 1066
BsiHKAI	GWGCWC	3 cut(s)	54, 132, 276
BsiHKCI	CYCGRG	1 cut(s)	663
BsiSI	CCGG	2 cut(s)	521, 1084
BslFI	GGGAC	1 cut(s)	375
BslI	CCNNNNNNNGG	5 cut(s)	527, 696, 1018, 1178, 1221
BsmAI	GTCTC	2 cut(s)	239, 289
BsmFI	GGGAC	1 cut(s)	375
BsmI	GAATGC	2 cut(s)	658, 877
BsnI	GGCC	5 cut(s)	342, 774, 927, 1003, 1010
BsoBI	CYCGRG	1 cut(s)	663
Bsp120I	GGGCCC	1 cut(s)	340
Bsp1286I	GDGCHC	5 cut(s)	54, 132, 276, 344, 570
Bsp143I	GATC	6 cut(s)	114, 517, 681, 795, 937, 1132
Bsp1720I	GCTNAGC	1 cut(s)	98
Bsp19I	CCATGG	1 cut(s)	690
BspANI	GGCC	5 cut(s)	342, 774, 927, 1003, 1010
BspCNI	CTCAG	5 cut(s)	66, 103, 111, 349, 954
BspFNI	CGCG	1 cut(s)	303
BspLI	GGNNCC	8 cut(s)	106, 124, 342, 363, 1011, 1068, 1128, 1213
BspMAI	CTGCAG	1 cut(s)	1051
BspMI	ACCTGC	1 cut(s)	16
BspPI	GGATC	1 cut(s)	512
BspT107I	GGYRCC	3 cut(s)	104, 122, 1066
BsrI	ACTGG	2 cut(s)	39, 288
BssECI	CCNNGG	5 cut(s)	20, 161, 344, 690, 1122
BssMI	GATC	6 cut(s)	114, 517, 681, 795, 937, 1132
BssNI	GRCGYC	2 cut(s)	75, 1067
BssT1I	CCWWGG	4 cut(s)	20, 344, 690, 1122
Bst2UI	CCWGG	6 cut(s)	163, 480, 776, 822, 868, 895
Bst4CI	ACNGT	2 cut(s)	1102, 1216
BstACI	GRCGYC	2 cut(s)	75, 1067
BstAPI	GCANNNNNTGC	1 cut(s)	1043
BstBAI	YACGTR	1 cut(s)	1161
BstC8I	GCNNGC	6 cut(s)	50, 95, 276, 621, 1001, 1044
BstDEI	CTNAG	8 cut(s)	53, 98, 111, 336, 404, 417, 763, 941
BstDSI	CCRYGG	1 cut(s)	690
BstF5I	GGATG	3 cut(s)	431, 488, 701
BstFNI	CGCG	1 cut(s)	303
BstH2I	RGCGCY	1 cut(s)	1070
BstHHI	GCGC	3 cut(s)	7, 305, 1069
BstKTI	GATC	6 cut(s)	117, 520, 684, 798, 940, 1135
BstMAI	GTCTC	2 cut(s)	239, 289
BstMBI	GATC	6 cut(s)	114, 517, 681, 795, 937, 1132
BstMWI	GCNNNNNNNGC	4 cut(s)	94, 99, 1043, 1175
BstNI	CCWGG	6 cut(s)	163, 480, 776, 822, 868, 895
BstSCI	CCNGG	7 cut(s)	161, 478, 774, 820, 866, 893, 1083
BstSFI	CTRYAG	1 cut(s)	1047
BstSLI	GKGCMC	3 cut(s)	276, 344, 570
BstSNI	TACGTA	1 cut(s)	1161
BstUI	CGCG	1 cut(s)	303
BstV1I	GCAGC	3 cut(s)	425, 1033, 1080
BstV2I	GAAGAC	1 cut(s)	1157
BstX2I	RGATCY	1 cut(s)	114
BstYI	RGATCY	1 cut(s)	114
BsuI	GTATCC	1 cut(s)	874
BsuRI	GGCC	5 cut(s)	342, 774, 927, 1003, 1010
BtgI	CCRYGG	1 cut(s)	690
BtsCI	GGATG	3 cut(s)	431, 488, 701
BveI	ACCTGC	1 cut(s)	16
Cac8I	GCNNGC	6 cut(s)	50, 95, 276, 621, 1001, 1044
CaiI	CAGNNNCTG	2 cut(s)	374, 1043
CfoI	GCGC	3 cut(s)	7, 305, 1069
Cfr13I	GGNCC	7 cut(s)	17, 37, 340, 341, 362, 1001, 1009
CseI	GACGC	1 cut(s)	83
Csp6I	GTAC	6 cut(s)	219, 232, 281, 384, 806, 1162
CviAII	CATG	5 cut(s)	691, 731, 793, 1221, 1233
CviQI	GTAC	6 cut(s)	219, 232, 281, 384, 806, 1162
DdeI	CTNAG	8 cut(s)	53, 98, 111, 336, 404, 417, 763, 941
DinI	GGCGCC	1 cut(s)	1068
DpnI	GATC	6 cut(s)	116, 519, 683, 797, 939, 1134
DpnII	GATC	6 cut(s)	114, 517, 681, 795, 937, 1132
DrdI	GACNNNNNNGTC	1 cut(s)	980
DseDI	GACNNNNNNGTC	1 cut(s)	980
EciI	GGCGGA	2 cut(s)	30, 80
Ecl136II	GAGCTC	2 cut(s)	52, 130
Eco105I	TACGTA	1 cut(s)	1161
Eco130I	CCWWGG	4 cut(s)	20, 344, 690, 1122
Eco24I	GRGCYC	3 cut(s)	54, 132, 344
Eco47I	GGWCC	3 cut(s)	17, 37, 362
Eco53kI	GAGCTC	2 cut(s)	52, 130
Eco88I	CYCGRG	1 cut(s)	663
EcoICRI	GAGCTC	2 cut(s)	52, 130
EcoO109I	RGGNCCY	3 cut(s)	340, 341, 1009
EcoRI	GAATTC	1 cut(s)	531
EcoRII	CCWGG	6 cut(s)	161, 478, 774, 820, 866, 893
EcoT14I	CCWWGG	4 cut(s)	20, 344, 690, 1122
EcoT38I	GRGCYC	3 cut(s)	54, 132, 344
EgeI	GGCGCC	1 cut(s)	1068
EheI	GGCGCC	1 cut(s)	1068
ErhI	CCWWGG	4 cut(s)	20, 344, 690, 1122
FaeI	CATG	5 cut(s)	694, 734, 796, 1224, 1236
FaqI	GGGAC	1 cut(s)	375
FatI	CATG	5 cut(s)	690, 730, 792, 1220, 1232
FauI	CCCGC	3 cut(s)	165, 992, 1171
FbaI	TGATCA	3 cut(s)	681, 795, 1132
FblI	GTMKAC	1 cut(s)	444
Fnu4HI	GCNGC	7 cut(s)	13, 103, 317, 414, 492, 1047, 1094
FokI	GGATG	3 cut(s)	438, 495, 708
FriOI	GRGCYC	3 cut(s)	54, 132, 344
Fsp4HI	GCNGC	7 cut(s)	13, 103, 317, 414, 492, 1047, 1094
FspBI	CTAG	4 cut(s)	345, 579, 770, 1146
GlaI	GCGC	3 cut(s)	6, 304, 1068
GluI	GCNGC	7 cut(s)	13, 103, 317, 414, 492, 1047, 1094
HaeII	RGCGCY	1 cut(s)	1070
HaeIII	GGCC	5 cut(s)	342, 774, 927, 1003, 1010
HapII	CCGG	2 cut(s)	521, 1084
HgaI	GACGC	1 cut(s)	83
HhaI	GCGC	3 cut(s)	7, 305, 1069
Hin1I	GRCGYC	2 cut(s)	75, 1067
Hin1II	CATG	5 cut(s)	694, 734, 796, 1224, 1236
Hin6I	GCGC	3 cut(s)	5, 303, 1067
HinP1I	GCGC	3 cut(s)	5, 303, 1067
HincII	GTYRAC	1 cut(s)	445
HindII	GTYRAC	1 cut(s)	445
HinfI	GANTC	5 cut(s)	57, 247, 371, 659, 898
HpaII	CCGG	2 cut(s)	521, 1084
HphI	GGTGA	4 cut(s)	40, 142, 361, 691
Hpy166II	GTNNAC	4 cut(s)	234, 274, 445, 829
Hpy188I	TCNGA	3 cut(s)	56, 800, 990
Hpy188III	TCNNGA	3 cut(s)	539, 663, 672
Hpy8I	GTNNAC	4 cut(s)	234, 274, 445, 829
Hpy99I	CGWCG	2 cut(s)	77, 446
HpyAV	CCTTC	5 cut(s)	163, 415, 521, 607, 698
HpyCH4III	ACNGT	2 cut(s)	1102, 1216
HpyCH4IV	ACGT	3 cut(s)	831, 1015, 1160
HpyCH4V	TGCA	8 cut(s)	274, 734, 932, 1037, 1049, 1096, 1169, 1208
HpyF10VI	GCNNNNNNNGC	4 cut(s)	94, 99, 1043, 1175
HpyF3I	CTNAG	8 cut(s)	53, 98, 111, 336, 404, 417, 763, 941
HpySE526I	ACGT	3 cut(s)	831, 1015, 1160
Hsp92I	GRCGYC	2 cut(s)	75, 1067
Hsp92II	CATG	5 cut(s)	694, 734, 796, 1224, 1236
HspAI	GCGC	3 cut(s)	5, 303, 1067
KasI	GGCGCC	1 cut(s)	1066
Ksp22I	TGATCA	3 cut(s)	681, 795, 1132
Kzo9I	GATC	6 cut(s)	114, 517, 681, 795, 937, 1132
LmnI	GCTCC	8 cut(s)	93, 135, 194, 464, 616, 789, 1126, 1183
Lsp1109I	GCAGC	3 cut(s)	425, 1033, 1080
MaeI	CTAG	4 cut(s)	345, 579, 770, 1146
MaeII	ACGT	3 cut(s)	831, 1015, 1160
MaeIII	GTNAC	2 cut(s)	971, 1216
MalI	GATC	6 cut(s)	116, 519, 683, 797, 939, 1134
MboI	GATC	6 cut(s)	114, 517, 681, 795, 937, 1132
MboII	GAAGA	4 cut(s)	109, 299, 719, 1162
MfeI	CAATTG	3 cut(s)	201, 735, 1029
MflI	RGATCY	1 cut(s)	114
MhlI	GDGCHC	5 cut(s)	54, 132, 276, 344, 570
Mly113I	GGCGCC	1 cut(s)	1067
MlyI	GAGTC	2 cut(s)	241, 907
MnlI	CCTC	4 cut(s)	90, 205, 546, 558
MroXI	GAANNNNTTC	1 cut(s)	531
MseI	TTAA	1 cut(s)	1080
MspA1I	CMGCKG	2 cut(s)	102, 110
MspI	CCGG	2 cut(s)	521, 1084
MspR9I	CCNGG	7 cut(s)	163, 480, 776, 822, 868, 895, 1085
MunI	CAATTG	3 cut(s)	201, 735, 1029
Mva1269I	GAATGC	2 cut(s)	658, 877
MvaI	CCWGG	6 cut(s)	163, 480, 776, 822, 868, 895
MvnI	CGCG	1 cut(s)	303
MwoI	GCNNNNNNNGC	4 cut(s)	94, 99, 1043, 1175
NarI	GGCGCC	1 cut(s)	1067
NciI	CCSGG	1 cut(s)	1085
NcoI	CCATGG	1 cut(s)	690
NdeII	GATC	6 cut(s)	114, 517, 681, 795, 937, 1132
NlaIII	CATG	5 cut(s)	694, 734, 796, 1224, 1236
NlaIV	GGNNCC	8 cut(s)	106, 124, 342, 363, 1011, 1068, 1128, 1213
NmuCI	GTSAC	2 cut(s)	971, 1216
PaeR7I	CTCGAG	1 cut(s)	663
PaqCI	CACCTGC	1 cut(s)	16
PctI	GAATGC	2 cut(s)	658, 877
PdmI	GAANNNNTTC	1 cut(s)	531
PfeI	GAWTC	3 cut(s)	57, 371, 659
PflMI	CCANNNNNTGG	1 cut(s)	696
PfoI	TCCNGGA	3 cut(s)	478, 866, 893
PkrI	GCNGC	7 cut(s)	14, 104, 318, 415, 493, 1048, 1095
PleI	GAGTC	2 cut(s)	241, 906
PluTI	GGCGCC	1 cut(s)	1070
PpsI	GAGTC	2 cut(s)	241, 906
Ppu21I	YACGTR	1 cut(s)	1161
Psp124BI	GAGCTC	2 cut(s)	54, 132
Psp6I	CCWGG	6 cut(s)	161, 478, 774, 820, 866, 893
PspGI	CCWGG	6 cut(s)	161, 478, 774, 820, 866, 893
PspN4I	GGNNCC	8 cut(s)	106, 124, 342, 363, 1011, 1068, 1128, 1213
PspOMI	GGGCCC	1 cut(s)	340
PspPI	GGNCC	7 cut(s)	17, 37, 340, 341, 362, 1001, 1009
PstI	CTGCAG	1 cut(s)	1051
PstNI	CAGNNNCTG	2 cut(s)	374, 1043
PsuI	RGATCY	1 cut(s)	114
RsaI	GTAC	6 cut(s)	220, 233, 282, 385, 807, 1163
RsaNI	GTAC	6 cut(s)	219, 232, 281, 384, 806, 1162
SacI	GAGCTC	2 cut(s)	54, 132
SalI	GTCGAC	1 cut(s)	443
SaqAI	TTAA	1 cut(s)	1080
SatI	GCNGC	7 cut(s)	13, 103, 317, 414, 492, 1047, 1094
Sau3AI	GATC	6 cut(s)	114, 517, 681, 795, 937, 1132
Sau96I	GGNCC	7 cut(s)	17, 37, 340, 341, 362, 1001, 1009
SchI	GAGTC	2 cut(s)	241, 907
ScrFI	CCNGG	7 cut(s)	163, 480, 776, 822, 868, 895, 1085
SduI	GDGCHC	5 cut(s)	54, 132, 276, 344, 570
SfcI	CTRYAG	1 cut(s)	1047
SfoI	GGCGCC	1 cut(s)	1068
Sfr274I	CTCGAG	1 cut(s)	663
SinI	GGWCC	3 cut(s)	17, 37, 362
SlaI	CTCGAG	1 cut(s)	663
SmlI	CTYRAG	3 cut(s)	83, 624, 663
SmoI	CTYRAG	3 cut(s)	83, 624, 663
SnaBI	TACGTA	1 cut(s)	1161
SspDI	GGCGCC	1 cut(s)	1066
SspI	AATATT	2 cut(s)	958, 1078
SspMI	CTAG	4 cut(s)	345, 579, 770, 1146
SstI	GAGCTC	2 cut(s)	54, 132
StyD4I	CCNGG	7 cut(s)	161, 478, 774, 820, 866, 893, 1083
StyI	CCWWGG	4 cut(s)	20, 344, 690, 1122
TaaI	ACNGT	2 cut(s)	1102, 1216
TaiI	ACGT	3 cut(s)	834, 1018, 1163
TaqI	TCGA	4 cut(s)	60, 392, 444, 664
TaqII	GACCGA	1 cut(s)	54
TatI	WGTACW	2 cut(s)	231, 805
TauI	GCSGC	4 cut(s)	15, 105, 319, 494
TfiI	GAWTC	3 cut(s)	57, 371, 659
Tru1I	TTAA	1 cut(s)	1080
Tru9I	TTAA	1 cut(s)	1080
TseFI	GTSAC	2 cut(s)	971, 1216
TseI	GCWGC	3 cut(s)	413, 1046, 1093
Tsp45I	GTSAC	2 cut(s)	971, 1216
TspDTI	ATGAA	2 cut(s)	719, 1104
TspGWI	ACGGA	4 cut(s)	207, 236, 307, 872
Van91I	CCANNNNNTGG	1 cut(s)	696
VneI	GTGCAC	1 cut(s)	272
VpaK11BI	GGWCC	3 cut(s)	17, 37, 362
XapI	RAATTY	4 cut(s)	170, 531, 878, 964
XhoI	CTCGAG	1 cut(s)	663
XmaJI	CCTAGG	1 cut(s)	344
XmiI	GTMKAC	1 cut(s)	444
XmnI	GAANNNNTTC	1 cut(s)	531
XspI	CTAG	4 cut(s)	345, 579, 770, 1146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.