Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009806

Physical Location & Seq

Genomic Coordinates Reverse (-)

1288155 .. 1290891

Gene Structure 2737 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G04730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGATTAATTTTGAGGCCACGGAGCTGAGATTAGGGCTACCGGGTGGGAATCACGGAGGAGAAATGGCTGGAAAAAATAATGGTAAAAGAGGATTTTCTGAGACTGTTGATCTCAAACTGAATCTTTCATCGACGGCTATGGATTCAGTTTCCAAAGTCGATTTAGAGAATATGAAGGAGAAGGTCGTAAAACCACCAGCCAAGGCACAAGTTGTGGGATGGCCACCGGTACGATCTTTCCGCAAGAACGTCATGTCCGGCCAAAAACCGACCACCGGAGATGCCACCGAAGGAAACGATAAGACTTCTGGCAGCAGTGGAGCCACCTCATCCGCCTCCGCATGTGCCACCGTGGCTTATGTGAAGGTTAGCATGGACGGTGCACCGTACCTACGGAAAATTGACTTGAAACTCTACAAAACTTACCAAGATCTCTCCAACGCCTTAAGCAAAATGTTTAGCTCTTTTACCATAGGCAACTATGGACCACAAGGAATGAAAGATTTCATGAATGAGAGTAAATTGATCGATCTTCTAAACGGATCAGATTATGTTCCAACATATGAAGATAAAGATGGCGACTGGATGCTTGTAGGAGACGTACCGTGGGAGATGTTTGTTGATTCATGCAAACGTATACGAATAATGAAGGGATCAGAAGCAATCGGACTTGCTCCAAGGGCATTAGAAAAGTGCAAGAACAGAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009606 GO:0009611 GO:0009628 GO:0009629 GO:0009630 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009753 GO:0009755 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010015 GO:0010033 GO:0010035 GO:0010101 GO:0010102 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022622 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048364 GO:0048518 GO:0048519 GO:0048523 GO:0048527 GO:0048528 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051172 GO:0051239 GO:0051240 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140110 GO:1900055 GO:1900057 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:1905392 GO:1905623 GO:2000024 GO:2000026 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

236

Amino Acids

25.66

Weight (kDa)

8.81

Isoelectric Point (pI)

30.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AUX_IAA	PF02309	6 - 227	1.2e-85	AUX/IAA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009806)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04730
fragaria_vesca	FvH4_6g02860
malus_domestica	MD04G1225100.v1.1 MD12G1241800.v1.1
prunus_persica	Prupe.6G343800_v2.0.a1 Prupe.6G343800_v2.0.a1 Prupe.6G343800_v2.0.a1
pyrus_communis	pycom04g19840 pycom12g22140
rosa_chinensis	RchiOBHm_Chr3g0451071
rosa_laevigata	RLG00000025694
rosa_multiflora	Rmu_sc0000078.1_g000001 Rmu_sc0023022.1_g000001 Rmu_ssc0000461.1_g000002
rosa_roxburghii	Rroxscaffold_6G00428540
rosa_rugosa	Rorug02G0631000
rosa_samantha	Rh3AG033800 Rh3BG034000 Rh3CG032700 Rh3DG033800
rosa_wichuraiana	Rw3G002450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	637
AciI	CCGC	3 cut(s)	241, 333, 339
AclWI	GGATC	2 cut(s)	550, 661
AcoI	YGGCCR	2 cut(s)	221, 259
AfaI	GTAC	3 cut(s)	231, 389, 603
AfiI	CCNNNNNNNGG	1 cut(s)	275
AflII	CTTAAG	1 cut(s)	445
AgeI	ACCGGT	1 cut(s)	226
AgsI	TTSAA	1 cut(s)	409
AloI	GAACNNNNNNTCC	2 cut(s)	239, 271
AluBI	AGCT	2 cut(s)	25, 462
AluI	AGCT	2 cut(s)	25, 462
Alw21I	GWGCWC	1 cut(s)	385
Alw26I	GTCTC	2 cut(s)	95, 591
Alw44I	GTGCAC	1 cut(s)	381
AlwI	GGATC	2 cut(s)	550, 661
AoxI	GGCC	3 cut(s)	15, 221, 259
ApaLI	GTGCAC	1 cut(s)	381
ApeKI	GCWGC	1 cut(s)	312
AseI	ATTAAT	1 cut(s)	6
AsiGI	ACCGGT	1 cut(s)	226
Asp700I	GAANNNNTTC	1 cut(s)	503
AspS9I	GGNCC	1 cut(s)	485
AsuC2I	CCSGG	1 cut(s)	42
AvaII	GGWCC	1 cut(s)	485
BaeGI	GKGCMC	1 cut(s)	385
BalI	TGGCCA	1 cut(s)	223
Bbv12I	GWGCWC	1 cut(s)	385
BbvI	GCAGC	1 cut(s)	324
BccI	CCATC	2 cut(s)	213, 569
BceAI	ACGGC	1 cut(s)	150
BcnI	CCSGG	1 cut(s)	42
BcoDI	GTCTC	2 cut(s)	95, 591
BfrI	CTTAAG	1 cut(s)	445
BglI	GCCNNNNNGGC	1 cut(s)	353
BglII	AGATCT	1 cut(s)	430
BisI	GCNGC	1 cut(s)	313
BlsI	GCNGC	1 cut(s)	314
Bme1390I	CCNGG	1 cut(s)	42
Bme18I	GGWCC	1 cut(s)	485
BmgT120I	GGNCC	1 cut(s)	485
BmiI	GGNNCC	1 cut(s)	322
BmrFI	CCNGG	1 cut(s)	42
BmsI	GCATC	2 cut(s)	271, 576
BpuMI	CCSGG	1 cut(s)	42
Bsa29I	ATCGAT	1 cut(s)	528
BsaJI	CCNNGG	5 cut(s)	18, 201, 351, 605, 677
BsaWI	WCCGGW	2 cut(s)	226, 275
Bsc4I	CCNNNNNNNGG	1 cut(s)	275
Bse118I	RCCGGY	1 cut(s)	226
Bse1I	ACTGG	1 cut(s)	587
BseCI	ATCGAT	1 cut(s)	528
BseDI	CCNNGG	5 cut(s)	18, 201, 351, 605, 677
BseGI	GGATG	3 cut(s)	224, 329, 591
BseLI	CCNNNNNNNGG	1 cut(s)	275
BseMII	CTCAG	2 cut(s)	17, 90
BseNI	ACTGG	1 cut(s)	587
BseRI	GAGGAG	1 cut(s)	72
BseSI	GKGCMC	1 cut(s)	385
BseXI	GCAGC	1 cut(s)	324
BshFI	GGCC	3 cut(s)	17, 223, 261
BshTI	ACCGGT	1 cut(s)	226
BshVI	ATCGAT	1 cut(s)	528
BsiHKAI	GWGCWC	1 cut(s)	385
BsiSI	CCGG	4 cut(s)	41, 227, 258, 276
BslI	CCNNNNNNNGG	1 cut(s)	275
BsmAI	GTCTC	2 cut(s)	95, 591
BsmBI	CGTCTC	1 cut(s)	591
BsnI	GGCC	3 cut(s)	17, 223, 261
Bsp1286I	GDGCHC	1 cut(s)	385
Bsp143I	GATC	7 cut(s)	109, 233, 430, 525, 529, 542, 653
BspACI	CCGC	3 cut(s)	241, 333, 339
BspANI	GGCC	3 cut(s)	17, 223, 261
BspCNI	CTCAG	2 cut(s)	18, 91
BspDI	ATCGAT	1 cut(s)	528
BspHI	TCATGA	1 cut(s)	507
BspLI	GGNNCC	1 cut(s)	322
BspPI	GGATC	2 cut(s)	550, 661
BspTI	CTTAAG	1 cut(s)	445
BsrFI	RCCGGY	1 cut(s)	226
BsrI	ACTGG	1 cut(s)	587
BssAI	RCCGGY	1 cut(s)	226
BssECI	CCNNGG	5 cut(s)	18, 201, 351, 605, 677
BssMI	GATC	7 cut(s)	109, 233, 430, 525, 529, 542, 653
BssNAI	GTATAC	1 cut(s)	638
BssT1I	CCWWGG	2 cut(s)	201, 677
Bst1107I	GTATAC	1 cut(s)	638
Bst4CI	ACNGT	5 cut(s)	106, 352, 380, 387, 606
BstAFI	CTTAAG	1 cut(s)	445
BstDEI	CTNAG	2 cut(s)	26, 99
BstDSI	CCRYGG	3 cut(s)	18, 351, 605
BstF5I	GGATG	3 cut(s)	224, 329, 591
BstKTI	GATC	7 cut(s)	112, 236, 433, 528, 532, 545, 656
BstMAI	GTCTC	2 cut(s)	95, 591
BstMBI	GATC	7 cut(s)	109, 233, 430, 525, 529, 542, 653
BstMWI	GCNNNNNNNGC	2 cut(s)	353, 680
BstNSI	RCATGY	1 cut(s)	345
BstSCI	CCNGG	1 cut(s)	40
BstSLI	GKGCMC	1 cut(s)	385
BstV1I	GCAGC	1 cut(s)	324
BstX2I	RGATCY	1 cut(s)	430
BstYI	RGATCY	1 cut(s)	430
BstZ17I	GTATAC	1 cut(s)	638
Bsu15I	ATCGAT	1 cut(s)	528
BsuRI	GGCC	3 cut(s)	17, 223, 261
BsuTUI	ATCGAT	1 cut(s)	528
BtgI	CCRYGG	3 cut(s)	18, 351, 605
BtsCI	GGATG	3 cut(s)	224, 329, 591
BtsI	GCAGTG	1 cut(s)	322
BtsIMutI	CAGTG	1 cut(s)	322
CciI	TCATGA	1 cut(s)	507
Cfr10I	RCCGGY	1 cut(s)	226
Cfr13I	GGNCC	1 cut(s)	485
ClaI	ATCGAT	1 cut(s)	528
Csp6I	GTAC	3 cut(s)	230, 388, 602
CspAI	ACCGGT	1 cut(s)	226
CviAII	CATG	5 cut(s)	253, 342, 373, 508, 627
CviQI	GTAC	3 cut(s)	230, 388, 602
DdeI	CTNAG	2 cut(s)	26, 99
DpnI	GATC	7 cut(s)	111, 235, 432, 527, 531, 544, 655
DpnII	GATC	7 cut(s)	109, 233, 430, 525, 529, 542, 653
EaeI	YGGCCR	2 cut(s)	221, 259
EciI	GGCGGA	1 cut(s)	322
Eco130I	CCWWGG	2 cut(s)	201, 677
Eco47I	GGWCC	1 cut(s)	485
EcoT14I	CCWWGG	2 cut(s)	201, 677
ErhI	CCWWGG	2 cut(s)	201, 677
Esp3I	CGTCTC	1 cut(s)	591
FaeI	CATG	5 cut(s)	256, 345, 376, 511, 630
FatI	CATG	5 cut(s)	252, 341, 372, 507, 626
FauNDI	CATATG	1 cut(s)	562
FblI	GTMKAC	1 cut(s)	637
Fnu4HI	GCNGC	1 cut(s)	313
FokI	GGATG	3 cut(s)	231, 316, 598
Fsp4HI	GCNGC	1 cut(s)	313
GluI	GCNGC	1 cut(s)	313
HaeIII	GGCC	3 cut(s)	17, 223, 261
HapII	CCGG	4 cut(s)	41, 227, 258, 276
Hin1II	CATG	5 cut(s)	256, 345, 376, 511, 630
HinfI	GANTC	4 cut(s)	49, 121, 143, 623
HpaII	CCGG	4 cut(s)	41, 227, 258, 276
Hpy166II	GTNNAC	2 cut(s)	383, 638
Hpy188I	TCNGA	4 cut(s)	100, 547, 658, 668
Hpy188III	TCNNGA	1 cut(s)	508
Hpy8I	GTNNAC	2 cut(s)	383, 638
Hpy99I	CGWCG	1 cut(s)	136
HpyAV	CCTTC	5 cut(s)	169, 175, 284, 358, 643
HpyCH4III	ACNGT	5 cut(s)	106, 352, 380, 387, 606
HpyCH4IV	ACGT	3 cut(s)	249, 600, 634
HpyCH4V	TGCA	3 cut(s)	383, 630, 696
HpyF10VI	GCNNNNNNNGC	2 cut(s)	353, 680
HpyF3I	CTNAG	2 cut(s)	26, 99
HpySE526I	ACGT	3 cut(s)	249, 600, 634
Hsp92II	CATG	5 cut(s)	256, 345, 376, 511, 630
Kzo9I	GATC	7 cut(s)	109, 233, 430, 525, 529, 542, 653
LmnI	GCTCC	3 cut(s)	22, 320, 679
LpnPI	CCDG	8 cut(s)	54, 54, 210, 240, 271, 289, 294, 568
Lsp1109I	GCAGC	1 cut(s)	324
LweI	GCATC	2 cut(s)	271, 576
MaeII	ACGT	3 cut(s)	249, 600, 634
MalI	GATC	7 cut(s)	111, 235, 432, 527, 531, 544, 655
MboI	GATC	7 cut(s)	109, 233, 430, 525, 529, 542, 653
MboII	GAAGA	2 cut(s)	524, 578
MflI	RGATCY	1 cut(s)	430
MhlI	GDGCHC	1 cut(s)	385
MlsI	TGGCCA	1 cut(s)	223
MluCI	AATT	3 cut(s)	7, 399, 521
MluNI	TGGCCA	1 cut(s)	223
MmeI	TCCRAC	2 cut(s)	462, 581
MnlI	CCTC	5 cut(s)	7, 50, 83, 337, 346
Mox20I	TGGCCA	1 cut(s)	223
MroXI	GAANNNNTTC	1 cut(s)	503
MscI	TGGCCA	1 cut(s)	223
MseI	TTAA	2 cut(s)	6, 446
Msp20I	TGGCCA	1 cut(s)	223
MspCI	CTTAAG	1 cut(s)	445
MspI	CCGG	4 cut(s)	41, 227, 258, 276
MspR9I	CCNGG	1 cut(s)	42
MwoI	GCNNNNNNNGC	2 cut(s)	353, 680
NciI	CCSGG	1 cut(s)	42
NdeI	CATATG	1 cut(s)	562
NdeII	GATC	7 cut(s)	109, 233, 430, 525, 529, 542, 653
NlaIII	CATG	5 cut(s)	256, 345, 376, 511, 630
NlaIV	GGNNCC	1 cut(s)	322
NspI	RCATGY	1 cut(s)	345
PagI	TCATGA	1 cut(s)	507
PdmI	GAANNNNTTC	1 cut(s)	503
PfeI	GAWTC	4 cut(s)	49, 121, 143, 623
PinAI	ACCGGT	1 cut(s)	226
PkrI	GCNGC	1 cut(s)	314
PshBI	ATTAAT	1 cut(s)	6
PspN4I	GGNNCC	1 cut(s)	322
PspPI	GGNCC	1 cut(s)	485
PsuI	RGATCY	1 cut(s)	430
RsaI	GTAC	3 cut(s)	231, 389, 603
RsaNI	GTAC	3 cut(s)	230, 388, 602
SaqAI	TTAA	2 cut(s)	6, 446
SatI	GCNGC	1 cut(s)	313
Sau3AI	GATC	7 cut(s)	109, 233, 430, 525, 529, 542, 653
Sau96I	GGNCC	1 cut(s)	485
ScrFI	CCNGG	1 cut(s)	42
SduI	GDGCHC	1 cut(s)	385
SetI	ASST	9 cut(s)	27, 186, 252, 329, 369, 393, 464, 603, 637
SfaNI	GCATC	2 cut(s)	271, 576
SinI	GGWCC	1 cut(s)	485
SmlI	CTYRAG	1 cut(s)	445
SmoI	CTYRAG	1 cut(s)	445
Sse9I	AATT	3 cut(s)	7, 399, 521
SsiI	CCGC	3 cut(s)	241, 333, 339
StyD4I	CCNGG	1 cut(s)	40
StyI	CCWWGG	2 cut(s)	201, 677
TaaI	ACNGT	5 cut(s)	106, 352, 380, 387, 606
TaiI	ACGT	3 cut(s)	252, 603, 637
TaqI	TCGA	3 cut(s)	131, 159, 528
TasI	AATT	3 cut(s)	7, 399, 521
TfiI	GAWTC	4 cut(s)	49, 121, 143, 623
Tru1I	TTAA	2 cut(s)	6, 446
Tru9I	TTAA	2 cut(s)	6, 446
TscAI	CASTG	1 cut(s)	322
TseI	GCWGC	1 cut(s)	312
TspDTI	ATGAA	8 cut(s)	117, 188, 496, 512, 524, 579, 615, 662
TspGWI	ACGGA	4 cut(s)	35, 69, 409, 555
TspRI	CASTG	1 cut(s)	322
Vha464I	CTTAAG	1 cut(s)	445
VneI	GTGCAC	1 cut(s)	381
VpaK11BI	GGWCC	1 cut(s)	485
VspI	ATTAAT	1 cut(s)	6
XceI	RCATGY	1 cut(s)	345
XmiI	GTMKAC	1 cut(s)	637
XmnI	GAANNNNTTC	1 cut(s)	503

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.