Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0009806

Physical Location & Seq

Genomic Coordinates Forward (+)

23153224 .. 23155303

Gene Structure 2080 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g22140.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGAACGATCAAGTGGAGGAGATGAAGAAGGAGAAGAATGTTGCTCCTGTTCCTAGGTCAAATAATCCAACTAAGCCTCCTGCTGCCAAGGCTCAAGCTGTAGGTTGGCCACCTGTCCGATCATTCCGAAAGAACATCCTGGCCGTCCAAAAGAATGGCTCTGAGGAGGGTGAAAAGACCAACAGTATCACTGCAGCATTTGTTAAAGTCAGCATGGATGGCGCGCCCTACTTGCGTAAGGTGGACCTGAAGCTGTACAAAAGCTACCAAGAGCTTTCTACTGCCTTAAGCAAAATGTTTAGCTCCTTCACCATCGGTAACTGTGGGTCACAAGGAATGAAGGATTTCGTGAACGAGAGCAAACTGATAGACCTTCTGAGTGGTTCTGAGTATGTGCCTAGTTATGAGGACAAGGATGGAGATTGGATGCTTGTTGGAGATGTGCCATGGGAAATGTTTGTCAATTCATGCAAACGCCTGCGAATAATGAAGGGATCTGAGGCTATTGGACTTGCACCAAGAGCGGTGGAGAAGTGCAAGAACAGAAGTTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

185

Amino Acids

20.43

Weight (kDa)

9.1

Isoelectric Point (pI)

45.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009806)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04730
fragaria_vesca	FvH4_6g02860
malus_domestica	MD04G1225100.v1.1 MD12G1241800.v1.1
prunus_persica	Prupe.6G343800_v2.0.a1 Prupe.6G343800_v2.0.a1 Prupe.6G343800_v2.0.a1
pyrus_communis	pycom04g19840 pycom12g22140
rosa_chinensis	RchiOBHm_Chr3g0451071
rosa_laevigata	RLG00000025694
rosa_multiflora	Rmu_sc0000078.1_g000001 Rmu_sc0023022.1_g000001 Rmu_ssc0000461.1_g000002
rosa_roxburghii	Rroxscaffold_6G00428540
rosa_rugosa	Rorug02G0631000
rosa_samantha	Rh3AG033800 Rh3BG034000 Rh3CG032700 Rh3DG033800
rosa_wichuraiana	Rw3G002450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	524
AccII	CGCG	1 cut(s)	224
AciI	CCGC	1 cut(s)	524
AclWI	GGATC	1 cut(s)	502
AcoI	YGGCCR	2 cut(s)	107, 141
AcuI	CTGAAG	1 cut(s)	269
AfaI	GTAC	1 cut(s)	257
AflII	CTTAAG	1 cut(s)	286
AjnI	CCWGG	1 cut(s)	138
AluBI	AGCT	5 cut(s)	98, 253, 264, 274, 303
AluI	AGCT	5 cut(s)	98, 253, 264, 274, 303
AlwI	GGATC	1 cut(s)	502
AoxI	GGCC	2 cut(s)	107, 141
ApeKI	GCWGC	2 cut(s)	83, 194
AscI	GGCGCGCC	1 cut(s)	222
Asp700I	GAANNNNTTC	1 cut(s)	344
AspA2I	CCTAGG	1 cut(s)	53
AspLEI	GCGC	2 cut(s)	224, 226
AspS9I	GGNCC	1 cut(s)	244
AsuHPI	GGTGA	2 cut(s)	182, 301
AvaII	GGWCC	1 cut(s)	244
AvrII	CCTAGG	1 cut(s)	53
BalI	TGGCCA	1 cut(s)	109
BbvI	GCAGC	2 cut(s)	70, 206
BccI	CCATC	3 cut(s)	212, 320, 410
BceAI	ACGGC	1 cut(s)	128
BciT130I	CCWGG	1 cut(s)	140
BfaI	CTAG	3 cut(s)	54, 399, 553
BfmI	CTRYAG	2 cut(s)	99, 192
BfrI	CTTAAG	1 cut(s)	286
BisI	GCNGC	2 cut(s)	84, 195
BlnI	CCTAGG	1 cut(s)	53
BlsI	GCNGC	2 cut(s)	85, 196
Bme1390I	CCNGG	1 cut(s)	140
Bme18I	GGWCC	1 cut(s)	244
BmgT120I	GGNCC	1 cut(s)	244
BmrFI	CCNGG	1 cut(s)	140
BmsI	GCATC	1 cut(s)	417
BpuEI	CTTGAG	1 cut(s)	78
BsaJI	CCNNGG	3 cut(s)	53, 87, 446
BsaXI	ACNNNNNCTCC	2 cut(s)	61, 91
BseBI	CCWGG	1 cut(s)	140
BseDI	CCNNGG	3 cut(s)	53, 87, 446
BseGI	GGATG	4 cut(s)	135, 223, 421, 432
BseMII	CTCAG	4 cut(s)	153, 368, 378, 489
BsePI	GCGCGC	1 cut(s)	222
BseRI	GAGGAG	2 cut(s)	32, 179
BseXI	GCAGC	2 cut(s)	70, 206
Bsh1236I	CGCG	1 cut(s)	224
BshFI	GGCC	2 cut(s)	109, 143
BsnI	GGCC	2 cut(s)	109, 143
Bsp1407I	TGTACA	1 cut(s)	255
Bsp143I	GATC	3 cut(s)	7, 119, 494
Bsp19I	CCATGG	1 cut(s)	446
BspACI	CCGC	1 cut(s)	524
BspANI	GGCC	2 cut(s)	109, 143
BspCNI	CTCAG	4 cut(s)	154, 369, 379, 490
BspFNI	CGCG	1 cut(s)	224
BspMAI	CTGCAG	1 cut(s)	196
BspPI	GGATC	1 cut(s)	502
BspTI	CTTAAG	1 cut(s)	286
BsrBI	CCGCTC	1 cut(s)	524
BsrGI	TGTACA	1 cut(s)	255
BssECI	CCNNGG	3 cut(s)	53, 87, 446
BssHII	GCGCGC	1 cut(s)	222
BssMI	GATC	3 cut(s)	7, 119, 494
BssT1I	CCWWGG	3 cut(s)	53, 87, 446
Bst2UI	CCWGG	1 cut(s)	140
Bst4CI	ACNGT	2 cut(s)	185, 323
BstAFI	CTTAAG	1 cut(s)	286
BstAUI	TGTACA	1 cut(s)	255
BstC8I	GCNNGC	2 cut(s)	224, 479
BstDEI	CTNAG	5 cut(s)	72, 162, 377, 387, 498
BstDSI	CCRYGG	1 cut(s)	446
BstF5I	GGATG	4 cut(s)	135, 223, 421, 432
BstFNI	CGCG	1 cut(s)	224
BstHHI	GCGC	2 cut(s)	224, 226
BstKTI	GATC	3 cut(s)	10, 122, 497
BstMBI	GATC	3 cut(s)	7, 119, 494
BstMWI	GCNNNNNNNGC	4 cut(s)	89, 219, 232, 521
BstNI	CCWGG	1 cut(s)	140
BstSCI	CCNGG	1 cut(s)	138
BstSFI	CTRYAG	2 cut(s)	99, 192
BstUI	CGCG	1 cut(s)	224
BstV1I	GCAGC	2 cut(s)	70, 206
BstX2I	RGATCY	1 cut(s)	494
BstXI	CCANNNNNNTGG	1 cut(s)	155
BstYI	RGATCY	1 cut(s)	494
BsuRI	GGCC	2 cut(s)	109, 143
BtgI	CCRYGG	1 cut(s)	446
BtsCI	GGATG	4 cut(s)	135, 223, 421, 432
BtsI	GCAGTG	1 cut(s)	189
BtsIMutI	CAGTG	1 cut(s)	189
Cac8I	GCNNGC	2 cut(s)	224, 479
CfoI	GCGC	2 cut(s)	224, 226
Cfr13I	GGNCC	1 cut(s)	244
Csp6I	GTAC	1 cut(s)	256
CspCI	CAANNNNNGTGG	2 cut(s)	507, 542
CviAII	CATG	3 cut(s)	214, 447, 468
CviQI	GTAC	1 cut(s)	256
DdeI	CTNAG	5 cut(s)	72, 162, 377, 387, 498
DpnI	GATC	3 cut(s)	9, 121, 496
DpnII	GATC	3 cut(s)	7, 119, 494
EaeI	YGGCCR	2 cut(s)	107, 141
Eco130I	CCWWGG	3 cut(s)	53, 87, 446
Eco47I	GGWCC	1 cut(s)	244
Eco57I	CTGAAG	1 cut(s)	269
EcoRII	CCWGG	1 cut(s)	138
EcoT14I	CCWWGG	3 cut(s)	53, 87, 446
ErhI	CCWWGG	3 cut(s)	53, 87, 446
FaeI	CATG	3 cut(s)	217, 450, 471
FaiI	YATR	5 cut(s)	215, 393, 405, 448, 469
FatI	CATG	3 cut(s)	213, 446, 467
Fnu4HI	GCNGC	2 cut(s)	84, 195
FokI	GGATG	4 cut(s)	122, 230, 428, 439
Fsp4HI	GCNGC	2 cut(s)	84, 195
FspBI	CTAG	3 cut(s)	54, 399, 553
GlaI	GCGC	2 cut(s)	223, 225
GluI	GCNGC	2 cut(s)	84, 195
HaeIII	GGCC	2 cut(s)	109, 143
HhaI	GCGC	2 cut(s)	224, 226
Hin1II	CATG	3 cut(s)	217, 450, 471
Hin6I	GCGC	2 cut(s)	222, 224
HinP1I	GCGC	2 cut(s)	222, 224
HphI	GGTGA	2 cut(s)	182, 301
Hpy166II	GTNNAC	2 cut(s)	244, 352
Hpy188I	TCNGA	6 cut(s)	119, 128, 163, 378, 388, 499
Hpy188III	TCNNGA	1 cut(s)	349
Hpy8I	GTNNAC	2 cut(s)	244, 352
HpyAV	CCTTC	5 cut(s)	22, 316, 334, 383, 484
HpyCH4III	ACNGT	2 cut(s)	185, 323
HpyCH4V	TGCA	4 cut(s)	194, 471, 515, 537
HpyF10VI	GCNNNNNNNGC	4 cut(s)	89, 219, 232, 521
HpyF3I	CTNAG	5 cut(s)	72, 162, 377, 387, 498
Hsp92II	CATG	3 cut(s)	217, 450, 471
HspAI	GCGC	2 cut(s)	222, 224
Kzo9I	GATC	3 cut(s)	7, 119, 494
LmnI	GCTCC	2 cut(s)	49, 308
LpnPI	CCDG	7 cut(s)	60, 93, 125, 126, 152, 260, 491
Lsp1109I	GCAGC	2 cut(s)	70, 206
LweI	GCATC	1 cut(s)	417
MaeI	CTAG	3 cut(s)	54, 399, 553
MaeIII	GTNAC	2 cut(s)	317, 327
MalI	GATC	3 cut(s)	9, 121, 496
MbiI	CCGCTC	1 cut(s)	524
MboI	GATC	3 cut(s)	7, 119, 494
MboII	GAAGA	2 cut(s)	37, 46
MflI	RGATCY	1 cut(s)	494
MlsI	TGGCCA	1 cut(s)	109
MluCI	AATT	1 cut(s)	463
MluNI	TGGCCA	1 cut(s)	109
MmeI	TCCRAC	2 cut(s)	92, 415
MnlI	CCTC	6 cut(s)	10, 87, 157, 160, 400, 493
Mox20I	TGGCCA	1 cut(s)	109
MroXI	GAANNNNTTC	1 cut(s)	344
MscI	TGGCCA	1 cut(s)	109
MseI	TTAA	2 cut(s)	204, 287
Msp20I	TGGCCA	1 cut(s)	109
MspCI	CTTAAG	1 cut(s)	286
MspR9I	CCNGG	1 cut(s)	140
MvaI	CCWGG	1 cut(s)	140
MvnI	CGCG	1 cut(s)	224
MwoI	GCNNNNNNNGC	4 cut(s)	89, 219, 232, 521
NcoI	CCATGG	1 cut(s)	446
NdeII	GATC	3 cut(s)	7, 119, 494
NlaIII	CATG	3 cut(s)	217, 450, 471
NmuCI	GTSAC	1 cut(s)	327
PalAI	GGCGCGCC	1 cut(s)	222
PauI	GCGCGC	1 cut(s)	222
PdmI	GAANNNNTTC	1 cut(s)	344
PkrI	GCNGC	2 cut(s)	85, 196
Psp6I	CCWGG	1 cut(s)	138
PspGI	CCWGG	1 cut(s)	138
PspPI	GGNCC	1 cut(s)	244
PstI	CTGCAG	1 cut(s)	196
PsuI	RGATCY	1 cut(s)	494
PteI	GCGCGC	1 cut(s)	222
RsaI	GTAC	1 cut(s)	257
RsaNI	GTAC	1 cut(s)	256
SaqAI	TTAA	2 cut(s)	204, 287
SatI	GCNGC	2 cut(s)	84, 195
Sau3AI	GATC	3 cut(s)	7, 119, 494
Sau96I	GGNCC	1 cut(s)	244
ScrFI	CCNGG	1 cut(s)	140
SfaNI	GCATC	1 cut(s)	417
SfcI	CTRYAG	2 cut(s)	99, 192
SgsI	GGCGCGCC	1 cut(s)	222
SinI	GGWCC	1 cut(s)	244
SmlI	CTYRAG	2 cut(s)	93, 286
SmoI	CTYRAG	2 cut(s)	93, 286
Sse9I	AATT	1 cut(s)	463
SsiI	CCGC	1 cut(s)	524
SspMI	CTAG	3 cut(s)	54, 399, 553
StyD4I	CCNGG	1 cut(s)	138
StyI	CCWWGG	3 cut(s)	53, 87, 446
TaaI	ACNGT	2 cut(s)	185, 323
TasI	AATT	1 cut(s)	463
TatI	WGTACW	1 cut(s)	255
Tru1I	TTAA	2 cut(s)	204, 287
Tru9I	TTAA	2 cut(s)	204, 287
TscAI	CASTG	1 cut(s)	196
TseFI	GTSAC	1 cut(s)	327
TseI	GCWGC	2 cut(s)	83, 194
Tsp45I	GTSAC	1 cut(s)	327
TspDTI	ATGAA	5 cut(s)	17, 38, 353, 456, 503
TspRI	CASTG	1 cut(s)	196
Vha464I	CTTAAG	1 cut(s)	286
VpaK11BI	GGWCC	1 cut(s)	244
XmaJI	CCTAGG	1 cut(s)	53
XmnI	GAANNNNTTC	1 cut(s)	344
XspI	CTAG	3 cut(s)	54, 399, 553

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.