Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0009806

Physical Location & Seq

Genomic Coordinates Reverse (-)

2263925 .. 2266868

Gene Structure 2944 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG033800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGACTAGTACTGCTGCTATGGGTGGTGGTGTTACGGAGGAGGATCGGAAGTACAGCTTGATAAACTTCGAAGAGACGGAGCTGCGTCTAGGGTTGCCGGGTCCGCTGAAAGACGGCGACCAAGGCGTGAAGAGCGGTAATGGGAAGAGAGGGTTTTTGGAAACGGTTGATTTGAAGCTCAACTTCTCGTCGGTAAATGATGATGAGCATCGGTCAGCTGGAGATGGTCAGCTGGAGATCAAAAAGGAGAAGGAGGATGCTTCTGCTGCTCCTGCTCCACGTGCAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

96

Amino Acids

10.28

Weight (kDa)

4.99

Isoelectric Point (pI)

33.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009806)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04730
fragaria_vesca	FvH4_6g02860
malus_domestica	MD04G1225100.v1.1 MD12G1241800.v1.1
prunus_persica	Prupe.6G343800_v2.0.a1 Prupe.6G343800_v2.0.a1 Prupe.6G343800_v2.0.a1
pyrus_communis	pycom04g19840 pycom12g22140
rosa_chinensis	RchiOBHm_Chr3g0451071
rosa_laevigata	RLG00000025694
rosa_multiflora	Rmu_sc0000078.1_g000001 Rmu_sc0023022.1_g000001 Rmu_ssc0000461.1_g000002
rosa_roxburghii	Rroxscaffold_6G00428540
rosa_rugosa	Rorug02G0631000
rosa_samantha	Rh3AG033800 Rh3BG034000 Rh3CG032700 Rh3DG033800
rosa_wichuraiana	Rw3G002450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	135
AciI	CCGC	2 cut(s)	104, 135
AclWI	GGATC	1 cut(s)	51
AcvI	CACGTG	1 cut(s)	281
AfaI	GTAC	2 cut(s)	10, 53
AgsI	TTSAA	1 cut(s)	175
AhlI	ACTAGT	1 cut(s)	5
AluBI	AGCT	5 cut(s)	57, 82, 178, 218, 232
AluI	AGCT	5 cut(s)	57, 82, 178, 218, 232
Alw26I	GTCTC	1 cut(s)	68
AlwI	GGATC	1 cut(s)	51
ApeKI	GCWGC	3 cut(s)	14, 82, 266
AspS9I	GGNCC	1 cut(s)	101
AsuC2I	CCSGG	1 cut(s)	99
AsuII	TTCGAA	1 cut(s)	69
AvaII	GGWCC	1 cut(s)	101
BbrPI	CACGTG	1 cut(s)	281
BbvI	GCAGC	2 cut(s)	69, 253
BccI	CCATC	1 cut(s)	218
BceAI	ACGGC	1 cut(s)	130
BcnI	CCSGG	1 cut(s)	99
BcoDI	GTCTC	1 cut(s)	68
BcuI	ACTAGT	1 cut(s)	5
BfaI	CTAG	2 cut(s)	6, 89
BisI	GCNGC	3 cut(s)	15, 83, 267
BlsI	GCNGC	3 cut(s)	16, 84, 268
BmcAI	AGTACT	1 cut(s)	10
Bme1390I	CCNGG	1 cut(s)	99
Bme18I	GGWCC	1 cut(s)	101
BmgT120I	GGNCC	1 cut(s)	101
BmiI	GGNNCC	1 cut(s)	102
BmrFI	CCNGG	1 cut(s)	99
BmsI	GCATC	2 cut(s)	217, 247
BpmI	CTGGAG	2 cut(s)	240, 254
Bpu14I	TTCGAA	1 cut(s)	69
BpuMI	CCSGG	1 cut(s)	99
BsaAI	YACGTR	1 cut(s)	281
BsaBI	GATNNNNATC	1 cut(s)	207
BsaJI	CCNNGG	1 cut(s)	121
Bse8I	GATNNNNATC	1 cut(s)	207
BseDI	CCNNGG	1 cut(s)	121
BseGI	GGATG	1 cut(s)	262
BseJI	GATNNNNATC	1 cut(s)	207
BseRI	GAGGAG	1 cut(s)	53
BseXI	GCAGC	2 cut(s)	69, 253
BsiSI	CCGG	1 cut(s)	98
BsmAI	GTCTC	1 cut(s)	68
BsmBI	CGTCTC	1 cut(s)	68
Bsp119I	TTCGAA	1 cut(s)	69
Bsp143I	GATC	2 cut(s)	43, 237
BspACI	CCGC	2 cut(s)	104, 135
BspLI	GGNNCC	1 cut(s)	102
BspPI	GGATC	1 cut(s)	51
BspQI	GCTCTTC	1 cut(s)	125
BspT104I	TTCGAA	1 cut(s)	69
BsrBI	CCGCTC	1 cut(s)	135
BssECI	CCNNGG	1 cut(s)	121
BssMI	GATC	2 cut(s)	43, 237
BssT1I	CCWWGG	1 cut(s)	121
Bst4CI	ACNGT	1 cut(s)	166
Bst6I	CTCTTC	3 cut(s)	66, 125, 140
BstBAI	YACGTR	1 cut(s)	281
BstBI	TTCGAA	1 cut(s)	69
BstF5I	GGATG	1 cut(s)	262
BstKTI	GATC	2 cut(s)	46, 240
BstMAI	GTCTC	1 cut(s)	68
BstMBI	GATC	2 cut(s)	43, 237
BstMWI	GCNNNNNNNGC	6 cut(s)	103, 123, 132, 266, 272, 281
BstSCI	CCNGG	1 cut(s)	97
BstV1I	GCAGC	2 cut(s)	69, 253
BtsCI	GGATG	1 cut(s)	262
Cfr13I	GGNCC	1 cut(s)	101
CseI	GACGC	1 cut(s)	74
Csp6I	GTAC	2 cut(s)	9, 52
CviJI	RGCY	5 cut(s)	57, 82, 178, 218, 232
CviKI_1	RGCY	5 cut(s)	57, 82, 178, 218, 232
CviQI	GTAC	2 cut(s)	9, 52
DpnI	GATC	2 cut(s)	45, 239
DpnII	GATC	2 cut(s)	43, 237
Eam1104I	CTCTTC	3 cut(s)	66, 125, 140
EarI	CTCTTC	3 cut(s)	66, 125, 140
Eco130I	CCWWGG	1 cut(s)	121
Eco47I	GGWCC	1 cut(s)	101
Eco72I	CACGTG	1 cut(s)	281
EcoT14I	CCWWGG	1 cut(s)	121
ErhI	CCWWGG	1 cut(s)	121
Esp3I	CGTCTC	1 cut(s)	68
FaiI	YATR	1 cut(s)	20
FalI	AAGNNNNNCTT	4 cut(s)	41, 73, 167, 199
Fnu4HI	GCNGC	3 cut(s)	15, 83, 267
FokI	GGATG	1 cut(s)	269
Fsp4HI	GCNGC	3 cut(s)	15, 83, 267
FspBI	CTAG	2 cut(s)	6, 89
GluI	GCNGC	3 cut(s)	15, 83, 267
GsuI	CTGGAG	2 cut(s)	240, 254
HapII	CCGG	1 cut(s)	98
HgaI	GACGC	1 cut(s)	74
HpaII	CCGG	1 cut(s)	98
Hpy188I	TCNGA	1 cut(s)	48
Hpy99I	CGWCG	1 cut(s)	193
HpyAV	CCTTC	1 cut(s)	244
HpyCH4III	ACNGT	1 cut(s)	166
HpyCH4IV	ACGT	1 cut(s)	280
HpyCH4V	TGCA	1 cut(s)	284
HpyF10VI	GCNNNNNNNGC	6 cut(s)	103, 123, 132, 266, 272, 281
HpySE526I	ACGT	1 cut(s)	280
Kzo9I	GATC	2 cut(s)	43, 237
LguI	GCTCTTC	1 cut(s)	125
LmnI	GCTCC	3 cut(s)	79, 274, 280
LpnPI	CCDG	4 cut(s)	111, 204, 218, 285
Lsp1109I	GCAGC	2 cut(s)	69, 253
LweI	GCATC	2 cut(s)	217, 247
MaeI	CTAG	2 cut(s)	6, 89
MaeII	ACGT	1 cut(s)	280
MaeIII	GTNAC	1 cut(s)	31
MalI	GATC	2 cut(s)	45, 239
MbiI	CCGCTC	1 cut(s)	135
MboI	GATC	2 cut(s)	43, 237
MboII	GAAGA	3 cut(s)	83, 142, 157
MnlI	CCTC	4 cut(s)	31, 34, 143, 247
MspA1I	CMGCKG	3 cut(s)	106, 218, 232
MspI	CCGG	1 cut(s)	98
MspR9I	CCNGG	1 cut(s)	99
MwoI	GCNNNNNNNGC	6 cut(s)	103, 123, 132, 266, 272, 281
NciI	CCSGG	1 cut(s)	99
NdeII	GATC	2 cut(s)	43, 237
NlaIV	GGNNCC	1 cut(s)	102
NspV	TTCGAA	1 cut(s)	69
PciSI	GCTCTTC	1 cut(s)	125
PkrI	GCNGC	3 cut(s)	16, 84, 268
PmaCI	CACGTG	1 cut(s)	281
PmlI	CACGTG	1 cut(s)	281
Ppu21I	YACGTR	1 cut(s)	281
PspCI	CACGTG	1 cut(s)	281
PspN4I	GGNNCC	1 cut(s)	102
PspPI	GGNCC	1 cut(s)	101
PvuII	CAGCTG	2 cut(s)	218, 232
RsaI	GTAC	2 cut(s)	10, 53
RsaNI	GTAC	2 cut(s)	9, 52
SapI	GCTCTTC	1 cut(s)	125
SatI	GCNGC	3 cut(s)	15, 83, 267
Sau3AI	GATC	2 cut(s)	43, 237
Sau96I	GGNCC	1 cut(s)	101
ScaI	AGTACT	1 cut(s)	10
ScrFI	CCNGG	1 cut(s)	99
SetI	ASST	6 cut(s)	59, 84, 180, 220, 234, 283
SfaNI	GCATC	2 cut(s)	217, 247
SfuI	TTCGAA	1 cut(s)	69
SinI	GGWCC	1 cut(s)	101
SpeI	ACTAGT	1 cut(s)	5
SsiI	CCGC	2 cut(s)	104, 135
SspMI	CTAG	2 cut(s)	6, 89
StyD4I	CCNGG	1 cut(s)	97
StyI	CCWWGG	1 cut(s)	121
TaaI	ACNGT	1 cut(s)	166
TaiI	ACGT	1 cut(s)	283
TaqI	TCGA	1 cut(s)	69
TaqII	GACCGA	1 cut(s)	201
TatI	WGTACW	2 cut(s)	8, 51
TseI	GCWGC	3 cut(s)	14, 82, 266
TspGWI	ACGGA	2 cut(s)	50, 92
VpaK11BI	GGWCC	1 cut(s)	101
XspI	CTAG	2 cut(s)	6, 89
ZrmI	AGTACT	1 cut(s)	10

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.