Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0009806

Physical Location & Seq

Genomic Coordinates Reverse (-)

48968371 .. 48970756

Gene Structure 2386 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00428540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGACTAGTACTGCTGCTATGGGTGGTGGTTTTACGGCGGAGGATAGGAAGTACAGCTTGATAAACTTCGAAGAGACGGAGCTGCGTCTAGGGTTGCCGGGTCCGCTGAAAGACGGTGACCAAGGCGTGAAGAGCGGTAATGGGAAGAGAGGGTTTTTGGAAACGGTTGATTTGAAGCTCAACTTTTCGTCGGTAAATGATGATGAGCATCGGTCAGCTGGAGATGGTCAGCTGGAGATCAAAAAGGACAAGGAGGGTGCTTCTGCTGCTCCTGCTCCACGTGCAAAGGCTCAGGTTGTGGGTTGGCCACCCGTCCGATCCTTCCGAAAGAATATCGTGACCGTCCAAAAGAAAAGCACAGATCAGGATCAGGCTGAAAAGACCGGCAGCACTAGTACTAGTGCAGCGTTTGTTAAAGTGAGCATGGATGGGGCCCCATATTTGCGCAAAGTCGACTTGAAGTTGTACCAAAGCTACCAAGAGCTTTCTACTGCTCTAGGCAAAATGTTTAGCTCCTTCACTATTGGTAACTGTGGGTCACAAGGAATGAAGGATTTCATGAACGAGAGCAAACTGATAGACCTTCTGAATGGTTCTGAGTATGTGCCTACTTATGAAGACAAAGATGAAGATTGGATGCTTGTGGGAGATGTACCATGGGAGATGTTCGTCGATTCATGCAAACGCTTGCGGATAATGAAGGGATCCGAGGCAATTGGACTTGCGCCGAGAGCCGTGGAGAAGTTCAAGAACAGAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

253

Amino Acids

27.79

Weight (kDa)

6.65

Isoelectric Point (pI)

32.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AUX_IAA	PF02309	25 - 244	1.1e-88	AUX/IAA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009806)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04730
fragaria_vesca	FvH4_6g02860
malus_domestica	MD04G1225100.v1.1 MD12G1241800.v1.1
prunus_persica	Prupe.6G343800_v2.0.a1 Prupe.6G343800_v2.0.a1 Prupe.6G343800_v2.0.a1
pyrus_communis	pycom04g19840 pycom12g22140
rosa_chinensis	RchiOBHm_Chr3g0451071
rosa_laevigata	RLG00000025694
rosa_multiflora	Rmu_sc0000078.1_g000001 Rmu_sc0023022.1_g000001 Rmu_ssc0000461.1_g000002
rosa_roxburghii	Rroxscaffold_6G00428540
rosa_rugosa	Rorug02G0631000
rosa_samantha	Rh3AG033800 Rh3BG034000 Rh3CG032700 Rh3DG033800
rosa_wichuraiana	Rw3G002450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	446
AccBSI	CCGCTC	1 cut(s)	135
AccI	GTMKAC	1 cut(s)	453
AciI	CCGC	4 cut(s)	38, 104, 135, 691
AclWI	GGATC	4 cut(s)	312, 375, 699, 712
AcoI	YGGCCR	1 cut(s)	305
AcvI	CACGTG	1 cut(s)	281
AfaI	GTAC	5 cut(s)	10, 53, 397, 467, 654
AgsI	TTSAA	3 cut(s)	175, 460, 748
AhlI	ACTAGT	3 cut(s)	5, 392, 398
AluBI	AGCT	8 cut(s)	57, 82, 178, 218, 232, 474, 484, 513
AluI	AGCT	8 cut(s)	57, 82, 178, 218, 232, 474, 484, 513
Alw26I	GTCTC	1 cut(s)	68
AlwI	GGATC	4 cut(s)	312, 375, 699, 712
AoxI	GGCC	2 cut(s)	305, 432
ApaI	GGGCCC	1 cut(s)	436
ApeKI	GCWGC	5 cut(s)	14, 82, 266, 387, 404
Asp700I	GAANNNNTTC	1 cut(s)	554
AspLEI	GCGC	2 cut(s)	447, 727
AspS9I	GGNCC	3 cut(s)	101, 432, 433
AsuC2I	CCSGG	1 cut(s)	99
AsuHPI	GGTGA	1 cut(s)	128
AsuII	TTCGAA	1 cut(s)	69
AvaII	GGWCC	1 cut(s)	101
BaeGI	GKGCMC	1 cut(s)	436
BalI	TGGCCA	1 cut(s)	307
BamHI	GGATCC	1 cut(s)	704
BanII	GRGCYC	1 cut(s)	436
BbrPI	CACGTG	1 cut(s)	281
BbsI	GAAGAC	1 cut(s)	624
BbvI	GCAGC	4 cut(s)	69, 253, 399, 416
BccI	CCATC	2 cut(s)	218, 422
BceAI	ACGGC	2 cut(s)	51, 719
BcnI	CCSGG	1 cut(s)	99
BcoDI	GTCTC	1 cut(s)	68
BcuI	ACTAGT	3 cut(s)	5, 392, 398
BfaI	CTAG	5 cut(s)	6, 89, 393, 399, 497
BisI	GCNGC	5 cut(s)	15, 83, 267, 388, 405
BlsI	GCNGC	5 cut(s)	16, 84, 268, 389, 406
BmcAI	AGTACT	2 cut(s)	10, 397
Bme1390I	CCNGG	1 cut(s)	99
Bme18I	GGWCC	1 cut(s)	101
BmgT120I	GGNCC	3 cut(s)	101, 432, 433
BmiI	GGNNCC	5 cut(s)	102, 433, 434, 435, 706
BmrFI	CCNGG	1 cut(s)	99
BmsI	GCATC	2 cut(s)	217, 627
BpiI	GAAGAC	1 cut(s)	624
BpmI	CTGGAG	2 cut(s)	240, 254
Bpu10I	CCTNAGC	1 cut(s)	291
Bpu14I	TTCGAA	1 cut(s)	69
BpuMI	CCSGG	1 cut(s)	99
BsaAI	YACGTR	1 cut(s)	281
BsaBI	GATNNNNATC	2 cut(s)	207, 366
BsaJI	CCNNGG	4 cut(s)	121, 656, 708, 735
Bse118I	RCCGGY	1 cut(s)	383
Bse8I	GATNNNNATC	2 cut(s)	207, 366
BseDI	CCNNGG	4 cut(s)	121, 656, 708, 735
BseGI	GGATG	2 cut(s)	433, 642
BseJI	GATNNNNATC	2 cut(s)	207, 366
BseMII	CTCAG	2 cut(s)	305, 588
BseSI	GKGCMC	1 cut(s)	436
BseXI	GCAGC	4 cut(s)	69, 253, 399, 416
BsgI	GTGCAG	1 cut(s)	423
BshFI	GGCC	2 cut(s)	307, 434
BsiSI	CCGG	2 cut(s)	98, 384
BsmAI	GTCTC	1 cut(s)	68
BsmBI	CGTCTC	1 cut(s)	68
BsnI	GGCC	2 cut(s)	307, 434
Bsp119I	TTCGAA	1 cut(s)	69
Bsp120I	GGGCCC	1 cut(s)	432
Bsp1286I	GDGCHC	1 cut(s)	436
Bsp143I	GATC	5 cut(s)	237, 317, 361, 367, 704
Bsp19I	CCATGG	1 cut(s)	656
BspACI	CCGC	4 cut(s)	38, 104, 135, 691
BspANI	GGCC	2 cut(s)	307, 434
BspCNI	CTCAG	2 cut(s)	304, 589
BspHI	TCATGA	1 cut(s)	558
BspLI	GGNNCC	5 cut(s)	102, 433, 434, 435, 706
BspPI	GGATC	4 cut(s)	312, 375, 699, 712
BspQI	GCTCTTC	1 cut(s)	125
BspT104I	TTCGAA	1 cut(s)	69
BsrBI	CCGCTC	1 cut(s)	135
BsrFI	RCCGGY	1 cut(s)	383
BssAI	RCCGGY	1 cut(s)	383
BssECI	CCNNGG	4 cut(s)	121, 656, 708, 735
BssMI	GATC	5 cut(s)	237, 317, 361, 367, 704
BssT1I	CCWWGG	2 cut(s)	121, 656
Bst4CI	ACNGT	4 cut(s)	116, 166, 343, 533
Bst6I	CTCTTC	3 cut(s)	66, 125, 140
BstBAI	YACGTR	1 cut(s)	281
BstBI	TTCGAA	1 cut(s)	69
BstC8I	GCNNGC	1 cut(s)	689
BstDEI	CTNAG	2 cut(s)	291, 597
BstDSI	CCRYGG	2 cut(s)	656, 735
BstEII	GGTNACC	1 cut(s)	116
BstF5I	GGATG	2 cut(s)	433, 642
BstHHI	GCGC	2 cut(s)	447, 727
BstKTI	GATC	5 cut(s)	240, 320, 364, 370, 707
BstMAI	GTCTC	1 cut(s)	68
BstMBI	GATC	5 cut(s)	237, 317, 361, 367, 704
BstMWI	GCNNNNNNNGC	6 cut(s)	103, 132, 266, 272, 281, 731
BstPI	GGTNACC	1 cut(s)	116
BstSCI	CCNGG	1 cut(s)	97
BstSLI	GKGCMC	1 cut(s)	436
BstV1I	GCAGC	4 cut(s)	69, 253, 399, 416
BstV2I	GAAGAC	1 cut(s)	624
BstX2I	RGATCY	1 cut(s)	704
BstYI	RGATCY	1 cut(s)	704
BsuRI	GGCC	2 cut(s)	307, 434
BtgI	CCRYGG	2 cut(s)	656, 735
BtsCI	GGATG	2 cut(s)	433, 642
Cac8I	GCNNGC	1 cut(s)	689
CciI	TCATGA	1 cut(s)	558
CfoI	GCGC	2 cut(s)	447, 727
Cfr10I	RCCGGY	1 cut(s)	383
Cfr13I	GGNCC	3 cut(s)	101, 432, 433
CseI	GACGC	1 cut(s)	74
Csp6I	GTAC	5 cut(s)	9, 52, 396, 466, 653
CviAII	CATG	4 cut(s)	424, 559, 657, 678
CviQI	GTAC	5 cut(s)	9, 52, 396, 466, 653
DdeI	CTNAG	2 cut(s)	291, 597
DpnI	GATC	5 cut(s)	239, 319, 363, 369, 706
DpnII	GATC	5 cut(s)	237, 317, 361, 367, 704
EaeI	YGGCCR	1 cut(s)	305
Eam1104I	CTCTTC	3 cut(s)	66, 125, 140
EarI	CTCTTC	3 cut(s)	66, 125, 140
EciI	GGCGGA	1 cut(s)	53
Eco130I	CCWWGG	2 cut(s)	121, 656
Eco24I	GRGCYC	1 cut(s)	436
Eco47I	GGWCC	1 cut(s)	101
Eco72I	CACGTG	1 cut(s)	281
Eco91I	GGTNACC	1 cut(s)	116
EcoO109I	RGGNCCY	2 cut(s)	432, 433
EcoO65I	GGTNACC	1 cut(s)	116
EcoT14I	CCWWGG	2 cut(s)	121, 656
EcoT38I	GRGCYC	1 cut(s)	436
ErhI	CCWWGG	2 cut(s)	121, 656
Esp3I	CGTCTC	1 cut(s)	68
FaeI	CATG	4 cut(s)	427, 562, 660, 681
FaiI	YATR	8 cut(s)	20, 425, 439, 560, 603, 615, 658, 679
FalI	AAGNNNNNCTT	4 cut(s)	41, 73, 167, 199
FatI	CATG	4 cut(s)	423, 558, 656, 677
FblI	GTMKAC	1 cut(s)	453
Fnu4HI	GCNGC	5 cut(s)	15, 83, 267, 388, 405
FokI	GGATG	2 cut(s)	440, 649
FriOI	GRGCYC	1 cut(s)	436
Fsp4HI	GCNGC	5 cut(s)	15, 83, 267, 388, 405
FspBI	CTAG	5 cut(s)	6, 89, 393, 399, 497
FspI	TGCGCA	1 cut(s)	446
GlaI	GCGC	2 cut(s)	446, 726
GluI	GCNGC	5 cut(s)	15, 83, 267, 388, 405
GsuI	CTGGAG	2 cut(s)	240, 254
HaeIII	GGCC	2 cut(s)	307, 434
HapII	CCGG	2 cut(s)	98, 384
HgaI	GACGC	1 cut(s)	74
HhaI	GCGC	2 cut(s)	447, 727
Hin1II	CATG	4 cut(s)	427, 562, 660, 681
Hin6I	GCGC	2 cut(s)	445, 725
HinP1I	GCGC	2 cut(s)	445, 725
HincII	GTYRAC	1 cut(s)	454
HindII	GTYRAC	1 cut(s)	454
HinfI	GANTC	1 cut(s)	674
HpaII	CCGG	2 cut(s)	98, 384
HphI	GGTGA	1 cut(s)	128
Hpy166II	GTNNAC	1 cut(s)	454
Hpy188I	TCNGA	5 cut(s)	317, 326, 588, 598, 709
Hpy188III	TCNNGA	4 cut(s)	337, 365, 559, 748
Hpy8I	GTNNAC	1 cut(s)	454
Hpy99I	CGWCG	2 cut(s)	193, 674
HpyAV	CCTTC	5 cut(s)	331, 526, 544, 593, 694
HpyCH4III	ACNGT	4 cut(s)	116, 166, 343, 533
HpyCH4IV	ACGT	1 cut(s)	280
HpyCH4V	TGCA	3 cut(s)	284, 404, 681
HpyF10VI	GCNNNNNNNGC	6 cut(s)	103, 132, 266, 272, 281, 731
HpyF3I	CTNAG	2 cut(s)	291, 597
HpySE526I	ACGT	1 cut(s)	280
Hsp92II	CATG	4 cut(s)	427, 562, 660, 681
HspAI	GCGC	2 cut(s)	445, 725
Kzo9I	GATC	5 cut(s)	237, 317, 361, 367, 704
LguI	GCTCTTC	1 cut(s)	125
LmnI	GCTCC	4 cut(s)	79, 274, 280, 518
LpnPI	CCDG	8 cut(s)	111, 204, 218, 278, 285, 350, 356, 397
Lsp1109I	GCAGC	4 cut(s)	69, 253, 399, 416
LweI	GCATC	2 cut(s)	217, 627
MaeI	CTAG	5 cut(s)	6, 89, 393, 399, 497
MaeII	ACGT	1 cut(s)	280
MaeIII	GTNAC	4 cut(s)	116, 337, 527, 537
MalI	GATC	5 cut(s)	239, 319, 363, 369, 706
MbiI	CCGCTC	1 cut(s)	135
MboI	GATC	5 cut(s)	237, 317, 361, 367, 704
MboII	GAAGA	5 cut(s)	83, 142, 157, 629, 641
MfeI	CAATTG	1 cut(s)	714
MflI	RGATCY	1 cut(s)	704
MhlI	GDGCHC	1 cut(s)	436
MlsI	TGGCCA	1 cut(s)	307
MluCI	AATT	1 cut(s)	714
MluNI	TGGCCA	1 cut(s)	307
MnlI	CCTC	4 cut(s)	34, 143, 247, 703
Mox20I	TGGCCA	1 cut(s)	307
MroXI	GAANNNNTTC	1 cut(s)	554
MscI	TGGCCA	1 cut(s)	307
MseI	TTAA	1 cut(s)	414
Msp20I	TGGCCA	1 cut(s)	307
MspA1I	CMGCKG	3 cut(s)	106, 218, 232
MspI	CCGG	2 cut(s)	98, 384
MspR9I	CCNGG	1 cut(s)	99
MunI	CAATTG	1 cut(s)	714
MwoI	GCNNNNNNNGC	6 cut(s)	103, 132, 266, 272, 281, 731
NciI	CCSGG	1 cut(s)	99
NcoI	CCATGG	1 cut(s)	656
NdeII	GATC	5 cut(s)	237, 317, 361, 367, 704
NlaIII	CATG	4 cut(s)	427, 562, 660, 681
NlaIV	GGNNCC	5 cut(s)	102, 433, 434, 435, 706
NmeAIII	GCCGAG	1 cut(s)	753
NmuCI	GTSAC	3 cut(s)	116, 337, 537
NsbI	TGCGCA	1 cut(s)	446
NspV	TTCGAA	1 cut(s)	69
PagI	TCATGA	1 cut(s)	558
PciSI	GCTCTTC	1 cut(s)	125
PdmI	GAANNNNTTC	1 cut(s)	554
PfeI	GAWTC	1 cut(s)	674
PkrI	GCNGC	5 cut(s)	16, 84, 268, 389, 406
PmaCI	CACGTG	1 cut(s)	281
PmlI	CACGTG	1 cut(s)	281
Ppu21I	YACGTR	1 cut(s)	281
PspCI	CACGTG	1 cut(s)	281
PspEI	GGTNACC	1 cut(s)	116
PspN4I	GGNNCC	5 cut(s)	102, 433, 434, 435, 706
PspOMI	GGGCCC	1 cut(s)	432
PspPI	GGNCC	3 cut(s)	101, 432, 433
PsuI	RGATCY	1 cut(s)	704
PvuII	CAGCTG	2 cut(s)	218, 232
RsaI	GTAC	5 cut(s)	10, 53, 397, 467, 654
RsaNI	GTAC	5 cut(s)	9, 52, 396, 466, 653
SalI	GTCGAC	1 cut(s)	452
SapI	GCTCTTC	1 cut(s)	125
SaqAI	TTAA	1 cut(s)	414
SatI	GCNGC	5 cut(s)	15, 83, 267, 388, 405
Sau3AI	GATC	5 cut(s)	237, 317, 361, 367, 704
Sau96I	GGNCC	3 cut(s)	101, 432, 433
ScaI	AGTACT	2 cut(s)	10, 397
ScrFI	CCNGG	1 cut(s)	99
SduI	GDGCHC	1 cut(s)	436
SfaNI	GCATC	2 cut(s)	217, 627
SfuI	TTCGAA	1 cut(s)	69
SinI	GGWCC	1 cut(s)	101
SpeI	ACTAGT	3 cut(s)	5, 392, 398
Sse9I	AATT	1 cut(s)	714
SsiI	CCGC	4 cut(s)	38, 104, 135, 691
SspMI	CTAG	5 cut(s)	6, 89, 393, 399, 497
StyD4I	CCNGG	1 cut(s)	97
StyI	CCWWGG	2 cut(s)	121, 656
TaaI	ACNGT	4 cut(s)	116, 166, 343, 533
TaiI	ACGT	1 cut(s)	283
TaqI	TCGA	3 cut(s)	69, 453, 672
TaqII	GACCGA	1 cut(s)	201
TasI	AATT	1 cut(s)	714
TatI	WGTACW	3 cut(s)	8, 51, 395
TfiI	GAWTC	1 cut(s)	674
Tru1I	TTAA	1 cut(s)	414
Tru9I	TTAA	1 cut(s)	414
TseFI	GTSAC	3 cut(s)	116, 337, 537
TseI	GCWGC	5 cut(s)	14, 82, 266, 387, 404
Tsp45I	GTSAC	3 cut(s)	116, 337, 537
TspDTI	ATGAA	7 cut(s)	547, 563, 575, 630, 642, 666, 713
TspGWI	ACGGA	1 cut(s)	92
VpaK11BI	GGWCC	1 cut(s)	101
XmiI	GTMKAC	1 cut(s)	453
XmnI	GAANNNNTTC	1 cut(s)	554
XspI	CTAG	5 cut(s)	6, 89, 393, 399, 497
ZrmI	AGTACT	2 cut(s)	10, 397

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.