Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000078.1

Orthogroup ID

OG0009806

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1349

Gene Structure 1349 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000078.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 475 bp

ggctcaagttgtgggttggccacccgtccgatccttccgaaagaaaatcgtgagcgtccaaaagaaaagcacagatcaggatcaggctgaaaagaccggcagcactagtactagtgcagcgtttgttaaagtgagcatggatggagccccatatttgcgcaaagtcgacttgaagttgtaccaaagctaccaagagctttctactgctctaggcaaaatgtttagctccttcactattggtaactgtgggtcacaaggaatgaaggatttcatgaacgagagcaaactgatagaccttctaaatggttctgagtatgtgcctacttatgaagacaaagatgaagattggatgcttgtgggagatgtaccatgggagatgttcgtcgattcatgcaaacgcttgcggataatgaagggatccgaggcaattggacttgcgccgagagccgtggagaagttcaagaacagaagttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

157

Amino Acids

17.61

Weight (kDa)

8.81

Isoelectric Point (pI)

34.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009806)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04730
fragaria_vesca	FvH4_6g02860
malus_domestica	MD04G1225100.v1.1 MD12G1241800.v1.1
prunus_persica	Prupe.6G343800_v2.0.a1 Prupe.6G343800_v2.0.a1 Prupe.6G343800_v2.0.a1
pyrus_communis	pycom04g19840 pycom12g22140
rosa_chinensis	RchiOBHm_Chr3g0451071
rosa_laevigata	RLG00000025694
rosa_multiflora	Rmu_sc0000078.1_g000001 Rmu_sc0023022.1_g000001 Rmu_ssc0000461.1_g000002
rosa_roxburghii	Rroxscaffold_6G00428540
rosa_rugosa	Rorug02G0631000
rosa_samantha	Rh3AG033800 Rh3BG034000 Rh3CG032700 Rh3DG033800
rosa_wichuraiana	Rw3G002450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	159
AccI	GTMKAC	1 cut(s)	166
AciI	CCGC	1 cut(s)	404
AclWI	GGATC	4 cut(s)	25, 88, 412, 425
AcoI	YGGCCR	1 cut(s)	18
AfaI	GTAC	3 cut(s)	110, 180, 367
AgsI	TTSAA	2 cut(s)	173, 461
AhlI	ACTAGT	2 cut(s)	105, 111
AluBI	AGCT	3 cut(s)	187, 197, 226
AluI	AGCT	3 cut(s)	187, 197, 226
AlwI	GGATC	4 cut(s)	25, 88, 412, 425
AoxI	GGCC	1 cut(s)	18
ApeKI	GCWGC	2 cut(s)	100, 117
Asp700I	GAANNNNTTC	1 cut(s)	267
AspLEI	GCGC	2 cut(s)	160, 440
BalI	TGGCCA	1 cut(s)	20
BamHI	GGATCC	1 cut(s)	417
BanII	GRGCYC	1 cut(s)	149
BbsI	GAAGAC	1 cut(s)	337
BbvI	GCAGC	2 cut(s)	112, 129
BccI	CCATC	1 cut(s)	135
BceAI	ACGGC	1 cut(s)	432
BcuI	ACTAGT	2 cut(s)	105, 111
BfaI	CTAG	3 cut(s)	106, 112, 210
BisI	GCNGC	2 cut(s)	101, 118
BlsI	GCNGC	2 cut(s)	102, 119
BmcAI	AGTACT	1 cut(s)	110
BmiI	GGNNCC	2 cut(s)	146, 419
BmsI	GCATC	1 cut(s)	340
BpiI	GAAGAC	1 cut(s)	337
BsaBI	GATNNNNATC	1 cut(s)	79
BsaJI	CCNNGG	3 cut(s)	369, 421, 448
Bse118I	RCCGGY	1 cut(s)	96
Bse8I	GATNNNNATC	1 cut(s)	79
BseDI	CCNNGG	3 cut(s)	369, 421, 448
BseGI	GGATG	2 cut(s)	146, 355
BseJI	GATNNNNATC	1 cut(s)	79
BseMII	CTCAG	1 cut(s)	301
BseXI	GCAGC	2 cut(s)	112, 129
BsgI	GTGCAG	1 cut(s)	136
BshFI	GGCC	1 cut(s)	20
BsiSI	CCGG	1 cut(s)	97
BsnI	GGCC	1 cut(s)	20
Bsp1286I	GDGCHC	1 cut(s)	149
Bsp143I	GATC	4 cut(s)	30, 74, 80, 417
Bsp19I	CCATGG	1 cut(s)	369
BspACI	CCGC	1 cut(s)	404
BspANI	GGCC	1 cut(s)	20
BspCNI	CTCAG	1 cut(s)	302
BspHI	TCATGA	1 cut(s)	271
BspLI	GGNNCC	2 cut(s)	146, 419
BspPI	GGATC	4 cut(s)	25, 88, 412, 425
BsrFI	RCCGGY	1 cut(s)	96
BssAI	RCCGGY	1 cut(s)	96
BssECI	CCNNGG	3 cut(s)	369, 421, 448
BssMI	GATC	4 cut(s)	30, 74, 80, 417
BssT1I	CCWWGG	1 cut(s)	369
Bst4CI	ACNGT	1 cut(s)	246
BstC8I	GCNNGC	1 cut(s)	402
BstDEI	CTNAG	1 cut(s)	310
BstDSI	CCRYGG	2 cut(s)	369, 448
BstF5I	GGATG	2 cut(s)	146, 355
BstHHI	GCGC	2 cut(s)	160, 440
BstKTI	GATC	4 cut(s)	33, 77, 83, 420
BstMBI	GATC	4 cut(s)	30, 74, 80, 417
BstMWI	GCNNNNNNNGC	1 cut(s)	444
BstV1I	GCAGC	2 cut(s)	112, 129
BstV2I	GAAGAC	1 cut(s)	337
BstX2I	RGATCY	1 cut(s)	417
BstYI	RGATCY	1 cut(s)	417
BsuRI	GGCC	1 cut(s)	20
BtgI	CCRYGG	2 cut(s)	369, 448
BtsCI	GGATG	2 cut(s)	146, 355
Cac8I	GCNNGC	1 cut(s)	402
CciI	TCATGA	1 cut(s)	271
CfoI	GCGC	2 cut(s)	160, 440
Cfr10I	RCCGGY	1 cut(s)	96
CseI	GACGC	1 cut(s)	44
Csp6I	GTAC	3 cut(s)	109, 179, 366
CviAII	CATG	4 cut(s)	137, 272, 370, 391
CviJI	RGCY	8 cut(s)	3, 20, 87, 147, 187, 197, 226, 447
CviKI_1	RGCY	8 cut(s)	3, 20, 87, 147, 187, 197, 226, 447
CviQI	GTAC	3 cut(s)	109, 179, 366
DdeI	CTNAG	1 cut(s)	310
DpnI	GATC	4 cut(s)	32, 76, 82, 419
DpnII	GATC	4 cut(s)	30, 74, 80, 417
EaeI	YGGCCR	1 cut(s)	18
Eco130I	CCWWGG	1 cut(s)	369
Eco24I	GRGCYC	1 cut(s)	149
EcoT14I	CCWWGG	1 cut(s)	369
EcoT38I	GRGCYC	1 cut(s)	149
ErhI	CCWWGG	1 cut(s)	369
FaeI	CATG	4 cut(s)	140, 275, 373, 394
FaiI	YATR	7 cut(s)	138, 152, 273, 316, 328, 371, 392
FatI	CATG	4 cut(s)	136, 271, 369, 390
FblI	GTMKAC	1 cut(s)	166
Fnu4HI	GCNGC	2 cut(s)	101, 118
FokI	GGATG	2 cut(s)	153, 362
FriOI	GRGCYC	1 cut(s)	149
Fsp4HI	GCNGC	2 cut(s)	101, 118
FspBI	CTAG	3 cut(s)	106, 112, 210
FspI	TGCGCA	1 cut(s)	159
GlaI	GCGC	2 cut(s)	159, 439
GluI	GCNGC	2 cut(s)	101, 118
HaeIII	GGCC	1 cut(s)	20
HapII	CCGG	1 cut(s)	97
HgaI	GACGC	1 cut(s)	44
HhaI	GCGC	2 cut(s)	160, 440
Hin1II	CATG	4 cut(s)	140, 275, 373, 394
Hin6I	GCGC	2 cut(s)	158, 438
HinP1I	GCGC	2 cut(s)	158, 438
HincII	GTYRAC	1 cut(s)	167
HindII	GTYRAC	1 cut(s)	167
HinfI	GANTC	1 cut(s)	387
HpaII	CCGG	1 cut(s)	97
Hpy166II	GTNNAC	1 cut(s)	167
Hpy188I	TCNGA	4 cut(s)	30, 39, 311, 422
Hpy188III	TCNNGA	4 cut(s)	50, 78, 272, 461
Hpy8I	GTNNAC	1 cut(s)	167
Hpy99I	CGWCG	1 cut(s)	387
HpyAV	CCTTC	5 cut(s)	44, 239, 257, 306, 407
HpyCH4III	ACNGT	1 cut(s)	246
HpyCH4V	TGCA	2 cut(s)	117, 394
HpyF10VI	GCNNNNNNNGC	1 cut(s)	444
HpyF3I	CTNAG	1 cut(s)	310
Hsp92II	CATG	4 cut(s)	140, 275, 373, 394
HspAI	GCGC	2 cut(s)	158, 438
Kzo9I	GATC	4 cut(s)	30, 74, 80, 417
LmnI	GCTCC	2 cut(s)	144, 231
LpnPI	CCDG	3 cut(s)	63, 69, 110
Lsp1109I	GCAGC	2 cut(s)	112, 129
LweI	GCATC	1 cut(s)	340
MaeI	CTAG	3 cut(s)	106, 112, 210
MaeIII	GTNAC	2 cut(s)	240, 250
MalI	GATC	4 cut(s)	32, 76, 82, 419
MboI	GATC	4 cut(s)	30, 74, 80, 417
MboII	GAAGA	2 cut(s)	342, 354
MfeI	CAATTG	1 cut(s)	427
MflI	RGATCY	1 cut(s)	417
MhlI	GDGCHC	1 cut(s)	149
MlsI	TGGCCA	1 cut(s)	20
MluCI	AATT	1 cut(s)	427
MluNI	TGGCCA	1 cut(s)	20
MnlI	CCTC	1 cut(s)	416
Mox20I	TGGCCA	1 cut(s)	20
MroXI	GAANNNNTTC	1 cut(s)	267
MscI	TGGCCA	1 cut(s)	20
MseI	TTAA	1 cut(s)	127
Msp20I	TGGCCA	1 cut(s)	20
MspI	CCGG	1 cut(s)	97
MunI	CAATTG	1 cut(s)	427
MwoI	GCNNNNNNNGC	1 cut(s)	444
NcoI	CCATGG	1 cut(s)	369
NdeII	GATC	4 cut(s)	30, 74, 80, 417
NlaIII	CATG	4 cut(s)	140, 275, 373, 394
NlaIV	GGNNCC	2 cut(s)	146, 419
NmeAIII	GCCGAG	1 cut(s)	466
NmuCI	GTSAC	1 cut(s)	250
NsbI	TGCGCA	1 cut(s)	159
PagI	TCATGA	1 cut(s)	271
PdmI	GAANNNNTTC	1 cut(s)	267
PfeI	GAWTC	1 cut(s)	387
PkrI	GCNGC	2 cut(s)	102, 119
PspN4I	GGNNCC	2 cut(s)	146, 419
PsuI	RGATCY	1 cut(s)	417
RsaI	GTAC	3 cut(s)	110, 180, 367
RsaNI	GTAC	3 cut(s)	109, 179, 366
SalI	GTCGAC	1 cut(s)	165
SaqAI	TTAA	1 cut(s)	127
SatI	GCNGC	2 cut(s)	101, 118
Sau3AI	GATC	4 cut(s)	30, 74, 80, 417
ScaI	AGTACT	1 cut(s)	110
SduI	GDGCHC	1 cut(s)	149
SetI	ASST	4 cut(s)	189, 199, 228, 298
SfaNI	GCATC	1 cut(s)	340
SmlI	CTYRAG	1 cut(s)	4
SmoI	CTYRAG	1 cut(s)	4
SpeI	ACTAGT	2 cut(s)	105, 111
Sse9I	AATT	1 cut(s)	427
SsiI	CCGC	1 cut(s)	404
SspMI	CTAG	3 cut(s)	106, 112, 210
StyI	CCWWGG	1 cut(s)	369
TaaI	ACNGT	1 cut(s)	246
TaqI	TCGA	2 cut(s)	166, 385
TasI	AATT	1 cut(s)	427
TatI	WGTACW	1 cut(s)	108
TfiI	GAWTC	1 cut(s)	387
Tru1I	TTAA	1 cut(s)	127
Tru9I	TTAA	1 cut(s)	127
TseFI	GTSAC	1 cut(s)	250
TseI	GCWGC	2 cut(s)	100, 117
Tsp45I	GTSAC	1 cut(s)	250
TspDTI	ATGAA	7 cut(s)	260, 276, 288, 343, 355, 379, 426
XmiI	GTMKAC	1 cut(s)	166
XmnI	GAANNNNTTC	1 cut(s)	267
XspI	CTAG	3 cut(s)	106, 112, 210
ZrmI	AGTACT	1 cut(s)	110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.