Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0009806

Physical Location & Seq

Genomic Coordinates Forward (+)

21468402 .. 21470974

Gene Structure 2573 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g19840.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGGGTAGCGTGATACATGAAGAGCAGAATCAGAAATATAGCTTGATAAACTTTGAGGAGACAGAACTGCGTCTGGGGTTGCCTGGTGGAATATTAAGCACTGCTGGAAAGGATGGTGAAGCTTCCAAGAACACTGGAAAGAGAGGGTTTGCTGAAACTGTTGATTTGAAGCTCAATATTTCATCTGAAGATCAGTCAGCTGGTGATGAAGATCAAGTGGTGGAGATGAAGAAGGAGAAGAATGTTGCTCCTGTTCCTATGTCAAATGATCCAACTAAGCCCCATGCTGCCAAGGCTCAAGTTGTAGGTTGGCCACCCGTCCGATCATTCCGAAAGAACATCCTGGCCGTCCAAAAGGATGTCTCGGATGAGGGTGAAAAGACCAACAGTATCAGCGCAGCATTTGTTAAAGTCAGCATGGATGGCGCACCCTACTTGCGTAAAGTGGACTTGAAGTTGTACAAAAGCTACCAAGAGCTTTCTACTGCCTTAGGAAAAATGTTCAGCTCCTTCACCATCGGTAGCTACGGGTCACAAGGAATGAAGGATTTCATGAACGAGAGCAAACTAATAGACCTTCTCAATGGTTCTGAGTATGTGCCTACATATGAGGACAAGGATGGAGATTGGATGCTTGTTGGAGATGTGCCATGGGAAATGTTCGTCAATTCATGCAAACGCTTGCGAATAATGAAGGGATCTGAAGCTATTGGACTTGCACCAAGAGCGGTGGAGAAGTGCAAGAACAGAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

252

Amino Acids

27.69

Weight (kDa)

5.88

Isoelectric Point (pI)

39.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009806)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04730
fragaria_vesca	FvH4_6g02860
malus_domestica	MD04G1225100.v1.1 MD12G1241800.v1.1
prunus_persica	Prupe.6G343800_v2.0.a1 Prupe.6G343800_v2.0.a1 Prupe.6G343800_v2.0.a1
pyrus_communis	pycom04g19840 pycom12g22140
rosa_chinensis	RchiOBHm_Chr3g0451071
rosa_laevigata	RLG00000025694
rosa_multiflora	Rmu_sc0000078.1_g000001 Rmu_sc0023022.1_g000001 Rmu_ssc0000461.1_g000002
rosa_roxburghii	Rroxscaffold_6G00428540
rosa_rugosa	Rorug02G0631000
rosa_samantha	Rh3AG033800 Rh3BG034000 Rh3CG032700 Rh3DG033800
rosa_wichuraiana	Rw3G002450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	728
AciI	CCGC	1 cut(s)	728
AclWI	GGATC	2 cut(s)	263, 706
AcoI	YGGCCR	2 cut(s)	311, 345
AcuI	CTGAAG	2 cut(s)	207, 723
AfaI	GTAC	1 cut(s)	461
AgsI	TTSAA	2 cut(s)	169, 454
AjnI	CCWGG	2 cut(s)	82, 342
AluBI	AGCT	9 cut(s)	42, 122, 172, 200, 468, 478, 507, 525, 707
AluI	AGCT	9 cut(s)	42, 122, 172, 200, 468, 478, 507, 525, 707
Alw26I	GTCTC	2 cut(s)	53, 367
AlwI	GGATC	2 cut(s)	263, 706
AoxI	GGCC	2 cut(s)	311, 345
ApeKI	GCWGC	2 cut(s)	287, 398
Asp700I	GAANNNNTTC	1 cut(s)	548
AspLEI	GCGC	2 cut(s)	398, 428
AsuHPI	GGTGA	4 cut(s)	128, 215, 386, 505
AxyI	CCTNAGG	1 cut(s)	490
BalI	TGGCCA	1 cut(s)	313
BbvI	GCAGC	2 cut(s)	274, 410
BccI	CCATC	4 cut(s)	107, 416, 524, 614
BceAI	ACGGC	1 cut(s)	332
BciT130I	CCWGG	2 cut(s)	84, 344
BcoDI	GTCTC	2 cut(s)	53, 367
BisI	GCNGC	2 cut(s)	288, 399
BlsI	GCNGC	2 cut(s)	289, 400
Bme1390I	CCNGG	2 cut(s)	84, 344
BmrFI	CCNGG	2 cut(s)	84, 344
BmsI	GCATC	1 cut(s)	621
BpuEI	CTTGAG	1 cut(s)	282
BsaBI	GATNNNNATC	1 cut(s)	210
BsaJI	CCNNGG	2 cut(s)	291, 650
Bse1I	ACTGG	1 cut(s)	139
Bse21I	CCTNAGG	1 cut(s)	490
Bse8I	GATNNNNATC	1 cut(s)	210
BseBI	CCWGG	2 cut(s)	84, 344
BseDI	CCNNGG	2 cut(s)	291, 650
BseGI	GGATG	7 cut(s)	118, 339, 364, 373, 427, 625, 636
BseJI	GATNNNNATC	1 cut(s)	210
BseMII	CTCAG	1 cut(s)	582
BseNI	ACTGG	1 cut(s)	139
BseRI	GAGGAG	1 cut(s)	71
BseXI	GCAGC	2 cut(s)	274, 410
BshFI	GGCC	2 cut(s)	313, 347
BsmAI	GTCTC	2 cut(s)	53, 367
BsnI	GGCC	2 cut(s)	313, 347
Bsp1407I	TGTACA	1 cut(s)	459
Bsp143I	GATC	5 cut(s)	190, 211, 268, 323, 698
Bsp19I	CCATGG	1 cut(s)	650
BspACI	CCGC	1 cut(s)	728
BspANI	GGCC	2 cut(s)	313, 347
BspCNI	CTCAG	1 cut(s)	583
BspHI	TCATGA	1 cut(s)	552
BspPI	GGATC	2 cut(s)	263, 706
BspQI	GCTCTTC	1 cut(s)	15
BsrBI	CCGCTC	1 cut(s)	728
BsrGI	TGTACA	1 cut(s)	459
BsrI	ACTGG	1 cut(s)	139
BssECI	CCNNGG	2 cut(s)	291, 650
BssMI	GATC	5 cut(s)	190, 211, 268, 323, 698
BssT1I	CCWWGG	2 cut(s)	291, 650
Bst2UI	CCWGG	2 cut(s)	84, 344
Bst4CI	ACNGT	2 cut(s)	160, 389
Bst6I	CTCTTC	1 cut(s)	15
BstAUI	TGTACA	1 cut(s)	459
BstC8I	GCNNGC	1 cut(s)	683
BstDEI	CTNAG	3 cut(s)	276, 490, 591
BstDSI	CCRYGG	1 cut(s)	650
BstF5I	GGATG	7 cut(s)	118, 339, 364, 373, 427, 625, 636
BstHHI	GCGC	2 cut(s)	398, 428
BstKTI	GATC	5 cut(s)	193, 214, 271, 326, 701
BstMAI	GTCTC	2 cut(s)	53, 367
BstMBI	GATC	5 cut(s)	190, 211, 268, 323, 698
BstMWI	GCNNNNNNNGC	3 cut(s)	293, 423, 725
BstNI	CCWGG	2 cut(s)	84, 344
BstSCI	CCNGG	2 cut(s)	82, 342
BstV1I	GCAGC	2 cut(s)	274, 410
BstX2I	RGATCY	1 cut(s)	698
BstYI	RGATCY	1 cut(s)	698
Bsu36I	CCTNAGG	1 cut(s)	490
BsuRI	GGCC	2 cut(s)	313, 347
BtgI	CCRYGG	1 cut(s)	650
BtsCI	GGATG	7 cut(s)	118, 339, 364, 373, 427, 625, 636
BtsI	GCAGTG	1 cut(s)	99
BtsIMutI	CAGTG	2 cut(s)	99, 132
Cac8I	GCNNGC	1 cut(s)	683
CciI	TCATGA	1 cut(s)	552
CfoI	GCGC	2 cut(s)	398, 428
CseI	GACGC	1 cut(s)	59
Csp6I	GTAC	1 cut(s)	460
CspCI	CAANNNNNGTGG	2 cut(s)	711, 746
CviAII	CATG	6 cut(s)	17, 284, 418, 553, 651, 672
CviQI	GTAC	1 cut(s)	460
DdeI	CTNAG	3 cut(s)	276, 490, 591
DpnI	GATC	5 cut(s)	192, 213, 270, 325, 700
DpnII	GATC	5 cut(s)	190, 211, 268, 323, 698
EaeI	YGGCCR	2 cut(s)	311, 345
Eam1104I	CTCTTC	1 cut(s)	15
EarI	CTCTTC	1 cut(s)	15
Eco130I	CCWWGG	2 cut(s)	291, 650
Eco57I	CTGAAG	2 cut(s)	207, 723
Eco81I	CCTNAGG	1 cut(s)	490
EcoRII	CCWGG	2 cut(s)	82, 342
EcoT14I	CCWWGG	2 cut(s)	291, 650
ErhI	CCWWGG	2 cut(s)	291, 650
FaeI	CATG	6 cut(s)	20, 287, 421, 556, 654, 675
FatI	CATG	6 cut(s)	16, 283, 417, 552, 650, 671
FauNDI	CATATG	1 cut(s)	607
Fnu4HI	GCNGC	2 cut(s)	288, 399
FokI	GGATG	7 cut(s)	125, 326, 371, 380, 434, 632, 643
Fsp4HI	GCNGC	2 cut(s)	288, 399
GlaI	GCGC	2 cut(s)	397, 427
GluI	GCNGC	2 cut(s)	288, 399
HaeIII	GGCC	2 cut(s)	313, 347
HgaI	GACGC	1 cut(s)	59
HhaI	GCGC	2 cut(s)	398, 428
Hin1II	CATG	6 cut(s)	20, 287, 421, 556, 654, 675
Hin6I	GCGC	2 cut(s)	396, 426
HinP1I	GCGC	2 cut(s)	396, 426
HindIII	AAGCTT	1 cut(s)	120
HinfI	GANTC	1 cut(s)	28
HphI	GGTGA	4 cut(s)	128, 215, 386, 505
Hpy166II	GTNNAC	1 cut(s)	448
Hpy188I	TCNGA	7 cut(s)	33, 187, 323, 332, 367, 592, 703
Hpy188III	TCNNGA	1 cut(s)	553
Hpy8I	GTNNAC	1 cut(s)	448
HpyAV	CCTTC	5 cut(s)	226, 520, 538, 587, 688
HpyCH4III	ACNGT	2 cut(s)	160, 389
HpyCH4V	TGCA	3 cut(s)	675, 719, 741
HpyF10VI	GCNNNNNNNGC	3 cut(s)	293, 423, 725
HpyF3I	CTNAG	3 cut(s)	276, 490, 591
Hsp92II	CATG	6 cut(s)	20, 287, 421, 556, 654, 675
HspAI	GCGC	2 cut(s)	396, 426
Kzo9I	GATC	5 cut(s)	190, 211, 268, 323, 698
LguI	GCTCTTC	1 cut(s)	15
LmnI	GCTCC	2 cut(s)	253, 512
LpnPI	CCDG	9 cut(s)	59, 69, 90, 96, 120, 186, 264, 329, 356
Lsp1109I	GCAGC	2 cut(s)	274, 410
LweI	GCATC	1 cut(s)	621
MaeIII	GTNAC	1 cut(s)	531
MalI	GATC	5 cut(s)	192, 213, 270, 325, 700
MbiI	CCGCTC	1 cut(s)	728
MboI	GATC	5 cut(s)	190, 211, 268, 323, 698
MboII	GAAGA	5 cut(s)	32, 200, 221, 241, 250
MflI	RGATCY	1 cut(s)	698
MlsI	TGGCCA	1 cut(s)	313
MluCI	AATT	1 cut(s)	667
MluNI	TGGCCA	1 cut(s)	313
MmeI	TCCRAC	2 cut(s)	296, 619
MnlI	CCTC	4 cut(s)	49, 137, 364, 604
Mox20I	TGGCCA	1 cut(s)	313
MroXI	GAANNNNTTC	1 cut(s)	548
MscI	TGGCCA	1 cut(s)	313
MseI	TTAA	2 cut(s)	95, 408
Msp20I	TGGCCA	1 cut(s)	313
MspA1I	CMGCKG	1 cut(s)	200
MspR9I	CCNGG	2 cut(s)	84, 344
MvaI	CCWGG	2 cut(s)	84, 344
MwoI	GCNNNNNNNGC	3 cut(s)	293, 423, 725
NcoI	CCATGG	1 cut(s)	650
NdeI	CATATG	1 cut(s)	607
NdeII	GATC	5 cut(s)	190, 211, 268, 323, 698
NlaIII	CATG	6 cut(s)	20, 287, 421, 556, 654, 675
NmuCI	GTSAC	1 cut(s)	531
PagI	TCATGA	1 cut(s)	552
PciSI	GCTCTTC	1 cut(s)	15
PdmI	GAANNNNTTC	1 cut(s)	548
PfeI	GAWTC	1 cut(s)	28
PkrI	GCNGC	2 cut(s)	289, 400
Psp6I	CCWGG	2 cut(s)	82, 342
PspGI	CCWGG	2 cut(s)	82, 342
PsuI	RGATCY	1 cut(s)	698
PvuII	CAGCTG	1 cut(s)	200
RsaI	GTAC	1 cut(s)	461
RsaNI	GTAC	1 cut(s)	460
SapI	GCTCTTC	1 cut(s)	15
SaqAI	TTAA	2 cut(s)	95, 408
SatI	GCNGC	2 cut(s)	288, 399
Sau3AI	GATC	5 cut(s)	190, 211, 268, 323, 698
ScrFI	CCNGG	2 cut(s)	84, 344
SfaNI	GCATC	1 cut(s)	621
SmlI	CTYRAG	1 cut(s)	297
SmoI	CTYRAG	1 cut(s)	297
Sse9I	AATT	1 cut(s)	667
SsiI	CCGC	1 cut(s)	728
SspI	AATATT	2 cut(s)	93, 178
StyD4I	CCNGG	2 cut(s)	82, 342
StyI	CCWWGG	2 cut(s)	291, 650
TaaI	ACNGT	2 cut(s)	160, 389
TasI	AATT	1 cut(s)	667
TatI	WGTACW	1 cut(s)	459
TfiI	GAWTC	1 cut(s)	28
Tru1I	TTAA	2 cut(s)	95, 408
Tru9I	TTAA	2 cut(s)	95, 408
TscAI	CASTG	2 cut(s)	106, 139
TseFI	GTSAC	1 cut(s)	531
TseI	GCWGC	2 cut(s)	287, 398
Tsp45I	GTSAC	1 cut(s)	531
TspDTI	ATGAA	9 cut(s)	33, 171, 222, 242, 541, 557, 569, 660, 707
TspRI	CASTG	2 cut(s)	106, 139
XmnI	GAANNNNTTC	1 cut(s)	548

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.