Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0009806

Physical Location & Seq

Genomic Coordinates Forward (+)

30488204 .. 30491484

Gene Structure 3281 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1225100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGGGTAGCGTGATACATGAACAGCAGAATCAGAAATATAGCTTGATAAACTTTGAGGAGACAGAACTGCGTCTGGGGTTGCCTGGTGGAATATTAAGCACTGCTGGAAAGGATGGTGAAGCTTCCAAGAACACTGGAAAGAGAGGGTTTGCTGAAACTGTTGATTTGAAGCTCAATATTTCATCCGAAGATCAGTCGGCTGGTGATGAAGATCAAGTGGTGGACATGAAGAAGGAGAAGGATGTTGCTCCTGTTCCTAGGTCAAATGATCCAACTAAGCCCCATGCTGCCAAGGCTCAAGTTGTAGGTTGGCCACCCGTCCGATCATTCCGAAAGAACATCCTGGCCGTCCAAAAGGATGTCTCGGATGAGGGTGAAAAGACCAACAGTGTCAGCGCAGCATTTGTTAAAGTCAGCATGGATGGCGCACCCTACTTGCGTAAAGTGGACTTGAAGTTGTACAAAAGCTACCAAGAGCTTTCTACTGCCTTAGGCAAAATGTTCAGTTCCTTCACCATCGGTAGCTACGGGTCACAAGGAATGAAGGATTTCATGAACGAGAGCAAACTAATAGACCTTCTGAATGGTTCTGAGTATGTGCCTACTTATGAGGACAAGGATGGAGATTGGATGCTTGTTGGAGATGTGCCATGGGAAATGTTCGTCAATTCATGCAAACGTTTGCGAATAATGAGGGGATCTGAAGCTATTGGACTTGCACCAAGAGCGGTGGAGAAGTGCAAGAATAGAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

252

Amino Acids

27.71

Weight (kDa)

6.22

Isoelectric Point (pI)

37.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AUX_IAA	PF02309	20 - 242	2e-89	AUX/IAA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009806)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04730
fragaria_vesca	FvH4_6g02860
malus_domestica	MD04G1225100.v1.1 MD12G1241800.v1.1
prunus_persica	Prupe.6G343800_v2.0.a1 Prupe.6G343800_v2.0.a1 Prupe.6G343800_v2.0.a1
pyrus_communis	pycom04g19840 pycom12g22140
rosa_chinensis	RchiOBHm_Chr3g0451071
rosa_laevigata	RLG00000025694
rosa_multiflora	Rmu_sc0000078.1_g000001 Rmu_sc0023022.1_g000001 Rmu_ssc0000461.1_g000002
rosa_roxburghii	Rroxscaffold_6G00428540
rosa_rugosa	Rorug02G0631000
rosa_samantha	Rh3AG033800 Rh3BG034000 Rh3CG032700 Rh3DG033800
rosa_wichuraiana	Rw3G002450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	728
AciI	CCGC	1 cut(s)	728
AclI	AACGTT	1 cut(s)	679
AclWI	GGATC	2 cut(s)	263, 706
AcoI	YGGCCR	2 cut(s)	311, 345
AcuI	CTGAAG	1 cut(s)	723
AfaI	GTAC	1 cut(s)	461
AgsI	TTSAA	2 cut(s)	169, 454
AjnI	CCWGG	2 cut(s)	82, 342
AluBI	AGCT	7 cut(s)	42, 122, 172, 468, 478, 525, 707
AluI	AGCT	7 cut(s)	42, 122, 172, 468, 478, 525, 707
Alw26I	GTCTC	2 cut(s)	53, 367
AlwI	GGATC	2 cut(s)	263, 706
AoxI	GGCC	2 cut(s)	311, 345
ApeKI	GCWGC	2 cut(s)	287, 398
Asp700I	GAANNNNTTC	1 cut(s)	548
AspA2I	CCTAGG	1 cut(s)	257
AspLEI	GCGC	2 cut(s)	398, 428
AsuHPI	GGTGA	4 cut(s)	128, 215, 386, 505
AvrII	CCTAGG	1 cut(s)	257
AxyI	CCTNAGG	1 cut(s)	490
BalI	TGGCCA	1 cut(s)	313
BbvI	GCAGC	2 cut(s)	274, 410
BccI	CCATC	4 cut(s)	107, 416, 524, 614
BceAI	ACGGC	1 cut(s)	332
BciT130I	CCWGG	2 cut(s)	84, 344
BcoDI	GTCTC	2 cut(s)	53, 367
BfaI	CTAG	1 cut(s)	258
BisI	GCNGC	2 cut(s)	288, 399
BlnI	CCTAGG	1 cut(s)	257
BlsI	GCNGC	2 cut(s)	289, 400
Bme1390I	CCNGG	2 cut(s)	84, 344
BmrFI	CCNGG	2 cut(s)	84, 344
BmsI	GCATC	1 cut(s)	621
BpuEI	CTTGAG	1 cut(s)	282
BsaBI	GATNNNNATC	1 cut(s)	210
BsaJI	CCNNGG	3 cut(s)	257, 291, 650
Bse1I	ACTGG	1 cut(s)	139
Bse21I	CCTNAGG	1 cut(s)	490
Bse8I	GATNNNNATC	1 cut(s)	210
BseBI	CCWGG	2 cut(s)	84, 344
BseDI	CCNNGG	3 cut(s)	257, 291, 650
BseGI	GGATG	9 cut(s)	118, 182, 247, 339, 364, 373, 427, 625, 636
BseJI	GATNNNNATC	1 cut(s)	210
BseMII	CTCAG	1 cut(s)	582
BseNI	ACTGG	1 cut(s)	139
BseRI	GAGGAG	1 cut(s)	71
BseXI	GCAGC	2 cut(s)	274, 410
BshFI	GGCC	2 cut(s)	313, 347
BsmAI	GTCTC	2 cut(s)	53, 367
BsnI	GGCC	2 cut(s)	313, 347
Bsp1407I	TGTACA	1 cut(s)	459
Bsp143I	GATC	5 cut(s)	190, 211, 268, 323, 698
Bsp19I	CCATGG	1 cut(s)	650
BspACI	CCGC	1 cut(s)	728
BspANI	GGCC	2 cut(s)	313, 347
BspCNI	CTCAG	1 cut(s)	583
BspHI	TCATGA	1 cut(s)	552
BspPI	GGATC	2 cut(s)	263, 706
BsrBI	CCGCTC	1 cut(s)	728
BsrGI	TGTACA	1 cut(s)	459
BsrI	ACTGG	1 cut(s)	139
BssECI	CCNNGG	3 cut(s)	257, 291, 650
BssMI	GATC	5 cut(s)	190, 211, 268, 323, 698
BssT1I	CCWWGG	3 cut(s)	257, 291, 650
Bst2UI	CCWGG	2 cut(s)	84, 344
Bst4CI	ACNGT	2 cut(s)	160, 389
BstAUI	TGTACA	1 cut(s)	459
BstDEI	CTNAG	3 cut(s)	276, 490, 591
BstDSI	CCRYGG	1 cut(s)	650
BstF5I	GGATG	9 cut(s)	118, 182, 247, 339, 364, 373, 427, 625, 636
BstHHI	GCGC	2 cut(s)	398, 428
BstKTI	GATC	5 cut(s)	193, 214, 271, 326, 701
BstMAI	GTCTC	2 cut(s)	53, 367
BstMBI	GATC	5 cut(s)	190, 211, 268, 323, 698
BstMWI	GCNNNNNNNGC	3 cut(s)	293, 423, 725
BstNI	CCWGG	2 cut(s)	84, 344
BstSCI	CCNGG	2 cut(s)	82, 342
BstV1I	GCAGC	2 cut(s)	274, 410
BstX2I	RGATCY	1 cut(s)	698
BstYI	RGATCY	1 cut(s)	698
Bsu36I	CCTNAGG	1 cut(s)	490
BsuRI	GGCC	2 cut(s)	313, 347
BtgI	CCRYGG	1 cut(s)	650
BtsCI	GGATG	9 cut(s)	118, 182, 247, 339, 364, 373, 427, 625, 636
BtsI	GCAGTG	1 cut(s)	99
BtsIMutI	CAGTG	3 cut(s)	99, 132, 394
CciI	TCATGA	1 cut(s)	552
CfoI	GCGC	2 cut(s)	398, 428
CseI	GACGC	1 cut(s)	59
Csp6I	GTAC	1 cut(s)	460
CspCI	CAANNNNNGTGG	2 cut(s)	711, 746
CviAII	CATG	7 cut(s)	17, 226, 284, 418, 553, 651, 672
CviQI	GTAC	1 cut(s)	460
DdeI	CTNAG	3 cut(s)	276, 490, 591
DpnI	GATC	5 cut(s)	192, 213, 270, 325, 700
DpnII	GATC	5 cut(s)	190, 211, 268, 323, 698
EaeI	YGGCCR	2 cut(s)	311, 345
Eco130I	CCWWGG	3 cut(s)	257, 291, 650
Eco57I	CTGAAG	1 cut(s)	723
Eco81I	CCTNAGG	1 cut(s)	490
EcoRII	CCWGG	2 cut(s)	82, 342
EcoT14I	CCWWGG	3 cut(s)	257, 291, 650
ErhI	CCWWGG	3 cut(s)	257, 291, 650
FaeI	CATG	7 cut(s)	20, 229, 287, 421, 556, 654, 675
FatI	CATG	7 cut(s)	16, 225, 283, 417, 552, 650, 671
Fnu4HI	GCNGC	2 cut(s)	288, 399
FokI	GGATG	9 cut(s)	125, 169, 254, 326, 371, 380, 434, 632, 643
Fsp4HI	GCNGC	2 cut(s)	288, 399
FspBI	CTAG	1 cut(s)	258
GlaI	GCGC	2 cut(s)	397, 427
GluI	GCNGC	2 cut(s)	288, 399
HaeIII	GGCC	2 cut(s)	313, 347
HgaI	GACGC	1 cut(s)	59
HhaI	GCGC	2 cut(s)	398, 428
Hin1II	CATG	7 cut(s)	20, 229, 287, 421, 556, 654, 675
Hin6I	GCGC	2 cut(s)	396, 426
HinP1I	GCGC	2 cut(s)	396, 426
HindIII	AAGCTT	1 cut(s)	120
HinfI	GANTC	1 cut(s)	28
HphI	GGTGA	4 cut(s)	128, 215, 386, 505
Hpy166II	GTNNAC	2 cut(s)	223, 448
Hpy188I	TCNGA	8 cut(s)	33, 187, 323, 332, 367, 582, 592, 703
Hpy188III	TCNNGA	1 cut(s)	553
Hpy8I	GTNNAC	2 cut(s)	223, 448
HpyAV	CCTTC	5 cut(s)	226, 232, 520, 538, 587
HpyCH4III	ACNGT	2 cut(s)	160, 389
HpyCH4IV	ACGT	1 cut(s)	679
HpyCH4V	TGCA	3 cut(s)	675, 719, 741
HpyF10VI	GCNNNNNNNGC	3 cut(s)	293, 423, 725
HpyF3I	CTNAG	3 cut(s)	276, 490, 591
HpySE526I	ACGT	1 cut(s)	679
Hsp92II	CATG	7 cut(s)	20, 229, 287, 421, 556, 654, 675
HspAI	GCGC	2 cut(s)	396, 426
Kzo9I	GATC	5 cut(s)	190, 211, 268, 323, 698
LmnI	GCTCC	1 cut(s)	253
LpnPI	CCDG	9 cut(s)	59, 69, 90, 96, 120, 186, 264, 329, 356
Lsp1109I	GCAGC	2 cut(s)	274, 410
LweI	GCATC	1 cut(s)	621
MaeI	CTAG	1 cut(s)	258
MaeII	ACGT	1 cut(s)	679
MaeIII	GTNAC	1 cut(s)	531
MalI	GATC	5 cut(s)	192, 213, 270, 325, 700
MbiI	CCGCTC	1 cut(s)	728
MboI	GATC	5 cut(s)	190, 211, 268, 323, 698
MboII	GAAGA	3 cut(s)	200, 221, 241
MflI	RGATCY	1 cut(s)	698
MlsI	TGGCCA	1 cut(s)	313
MluCI	AATT	1 cut(s)	667
MluNI	TGGCCA	1 cut(s)	313
MmeI	TCCRAC	2 cut(s)	296, 619
MnlI	CCTC	5 cut(s)	49, 137, 364, 604, 687
Mox20I	TGGCCA	1 cut(s)	313
MroXI	GAANNNNTTC	1 cut(s)	548
MscI	TGGCCA	1 cut(s)	313
MseI	TTAA	2 cut(s)	95, 408
Msp20I	TGGCCA	1 cut(s)	313
MspR9I	CCNGG	2 cut(s)	84, 344
MvaI	CCWGG	2 cut(s)	84, 344
MwoI	GCNNNNNNNGC	3 cut(s)	293, 423, 725
NcoI	CCATGG	1 cut(s)	650
NdeII	GATC	5 cut(s)	190, 211, 268, 323, 698
NlaIII	CATG	7 cut(s)	20, 229, 287, 421, 556, 654, 675
NmuCI	GTSAC	1 cut(s)	531
PagI	TCATGA	1 cut(s)	552
PdmI	GAANNNNTTC	1 cut(s)	548
PfeI	GAWTC	1 cut(s)	28
PkrI	GCNGC	2 cut(s)	289, 400
Psp1406I	AACGTT	1 cut(s)	679
Psp6I	CCWGG	2 cut(s)	82, 342
PspGI	CCWGG	2 cut(s)	82, 342
PsuI	RGATCY	1 cut(s)	698
RsaI	GTAC	1 cut(s)	461
RsaNI	GTAC	1 cut(s)	460
SaqAI	TTAA	2 cut(s)	95, 408
SatI	GCNGC	2 cut(s)	288, 399
Sau3AI	GATC	5 cut(s)	190, 211, 268, 323, 698
ScrFI	CCNGG	2 cut(s)	84, 344
SfaNI	GCATC	1 cut(s)	621
SmlI	CTYRAG	1 cut(s)	297
SmoI	CTYRAG	1 cut(s)	297
Sse9I	AATT	1 cut(s)	667
SsiI	CCGC	1 cut(s)	728
SspI	AATATT	2 cut(s)	93, 178
SspMI	CTAG	1 cut(s)	258
StyD4I	CCNGG	2 cut(s)	82, 342
StyI	CCWWGG	3 cut(s)	257, 291, 650
TaaI	ACNGT	2 cut(s)	160, 389
TaiI	ACGT	1 cut(s)	682
TasI	AATT	1 cut(s)	667
TatI	WGTACW	1 cut(s)	459
TfiI	GAWTC	1 cut(s)	28
Tru1I	TTAA	2 cut(s)	95, 408
Tru9I	TTAA	2 cut(s)	95, 408
TscAI	CASTG	3 cut(s)	106, 139, 394
TseFI	GTSAC	1 cut(s)	531
TseI	GCWGC	2 cut(s)	287, 398
Tsp45I	GTSAC	1 cut(s)	531
TspDTI	ATGAA	8 cut(s)	33, 171, 222, 242, 541, 557, 569, 660
TspRI	CASTG	3 cut(s)	106, 139, 394
XmaJI	CCTAGG	1 cut(s)	257
XmnI	GAANNNNTTC	1 cut(s)	548
XspI	CTAG	1 cut(s)	258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.