Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0009806

Physical Location & Seq

Genomic Coordinates Reverse (-)

1613749 .. 1616364

Gene Structure 2616 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g02860.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGACTAGTACTGTAGCCATGGGTGGTGGTGTTACGGTGGAGGACAGGAATTACAGCTTGATAAACTTTGAAGAGACGGAGCTGCGTCTAGGGTTGCCGGGTGCGCTGAAAGACGGCGACCAAGGCGTGAAGAGCTGCAGTAGCGGGAAGAGAGGGTTTTCGGAAACGGTTGATTTGAAGCTCAATTTCTCCTCGGAAAATGATGATGTGAGCCGGTCAGGGAGAGATGGTCAGGTGGAGATCAAGAAGGAGAAGGATGCTTCTGCTGCTCCTGCTCCTCGTGCAAAGGCTCAAGTTGTGGGTTGGCCACCCGTCCGATCATTCCGAAAGAACATCGTCGCCGTCCAAAAGAAGAGCACCGATCAGGATCAGGCCGCCGAGAAGAGTGGCAGCACTAGTACTAGTGCGGCCTTTGTTAAAGTGAGTATGGATGGGGCACCTTATCTACGTAAAGTCGACTTGAAGTTGTACCAAAGCTACCAAGAGCTTTCTACTGCCCTAGGCAAAATGTTCAGCTCCTTCACTATTGGTAACTGTGGATCACAAGGAATGAAGGATTTCATGAACGAGAGCAAACTGATAGACCTTCTGAATGGTTCTGAATATGTGCCTAGTTATGAAGACAAAGATGGAGATTGGATGCTTGTGGGAGATGTACCATGGGAGATGTTCGTCGATTCATGCAAACGCTTGCGGATAATGAAGGGATCGGAGGCGATTGGACTTGCGCCGAGAGCGGTGGAGAAGTTCAAGAACAGAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

255

Amino Acids

27.74

Weight (kDa)

7.59

Isoelectric Point (pI)

38.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AUX_IAA	PF02309	25 - 245	1.8e-90	AUX/IAA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009806)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04730
fragaria_vesca	FvH4_6g02860
malus_domestica	MD04G1225100.v1.1 MD12G1241800.v1.1
prunus_persica	Prupe.6G343800_v2.0.a1 Prupe.6G343800_v2.0.a1 Prupe.6G343800_v2.0.a1
pyrus_communis	pycom04g19840 pycom12g22140
rosa_chinensis	RchiOBHm_Chr3g0451071
rosa_laevigata	RLG00000025694
rosa_multiflora	Rmu_sc0000078.1_g000001 Rmu_sc0023022.1_g000001 Rmu_ssc0000461.1_g000002
rosa_roxburghii	Rroxscaffold_6G00428540
rosa_rugosa	Rorug02G0631000
rosa_samantha	Rh3AG033800 Rh3BG034000 Rh3CG032700 Rh3DG033800
rosa_wichuraiana	Rw3G002450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	436
AccBSI	CCGCTC	1 cut(s)	737
AccI	GTMKAC	1 cut(s)	456
AciI	CCGC	5 cut(s)	144, 375, 407, 694, 737
AclWI	GGATC	3 cut(s)	375, 547, 715
AcoI	YGGCCR	1 cut(s)	305
AfaI	GTAC	4 cut(s)	10, 400, 470, 657
AgsI	TTSAA	4 cut(s)	71, 178, 463, 751
AhlI	ACTAGT	3 cut(s)	5, 395, 401
AluBI	AGCT	7 cut(s)	57, 82, 135, 181, 477, 487, 516
AluI	AGCT	7 cut(s)	57, 82, 135, 181, 477, 487, 516
Alw21I	GWGCWC	1 cut(s)	359
Alw26I	GTCTC	1 cut(s)	68
AlwI	GGATC	3 cut(s)	375, 547, 715
AoxI	GGCC	3 cut(s)	305, 372, 408
ApeKI	GCWGC	4 cut(s)	82, 135, 266, 390
Asp700I	GAANNNNTTC	1 cut(s)	557
AspA2I	CCTAGG	1 cut(s)	499
AspLEI	GCGC	2 cut(s)	106, 730
AsuC2I	CCSGG	1 cut(s)	99
AvrII	CCTAGG	1 cut(s)	499
BaeGI	GKGCMC	1 cut(s)	439
BalI	TGGCCA	1 cut(s)	307
BanI	GGYRCC	1 cut(s)	436
BauI	CACGAG	1 cut(s)	279
BbsI	GAAGAC	1 cut(s)	627
Bbv12I	GWGCWC	1 cut(s)	359
BbvI	GCAGC	4 cut(s)	69, 122, 253, 402
BccI	CCATC	3 cut(s)	221, 425, 623
BceAI	ACGGC	2 cut(s)	130, 326
BcnI	CCSGG	1 cut(s)	99
BcoDI	GTCTC	1 cut(s)	68
BcuI	ACTAGT	3 cut(s)	5, 395, 401
BfaI	CTAG	6 cut(s)	6, 89, 396, 402, 500, 612
BfmI	CTRYAG	2 cut(s)	12, 136
BisI	GCNGC	6 cut(s)	83, 136, 267, 375, 391, 408
BlnI	CCTAGG	1 cut(s)	499
BlsI	GCNGC	6 cut(s)	84, 137, 268, 376, 392, 409
BmcAI	AGTACT	2 cut(s)	10, 400
Bme1390I	CCNGG	1 cut(s)	99
BmiI	GGNNCC	1 cut(s)	438
BmrFI	CCNGG	1 cut(s)	99
BmsI	GCATC	2 cut(s)	247, 630
BpiI	GAAGAC	1 cut(s)	627
BpuEI	CTTGAG	1 cut(s)	276
BpuMI	CCSGG	1 cut(s)	99
BsaAI	YACGTR	1 cut(s)	449
BsaBI	GATNNNNATC	1 cut(s)	366
BsaJI	CCNNGG	5 cut(s)	18, 121, 192, 499, 659
BsaXI	ACNNNNNCTCC	2 cut(s)	214, 244
Bse118I	RCCGGY	1 cut(s)	213
Bse8I	GATNNNNATC	1 cut(s)	366
BseDI	CCNNGG	5 cut(s)	18, 121, 192, 499, 659
BseGI	GGATG	3 cut(s)	262, 436, 645
BseJI	GATNNNNATC	1 cut(s)	366
BseRI	GAGGAG	2 cut(s)	181, 267
BseSI	GKGCMC	1 cut(s)	439
BseXI	GCAGC	4 cut(s)	69, 122, 253, 402
BshFI	GGCC	3 cut(s)	307, 374, 410
BshNI	GGYRCC	1 cut(s)	436
BsiHKAI	GWGCWC	1 cut(s)	359
BsiSI	CCGG	2 cut(s)	98, 214
BsmAI	GTCTC	1 cut(s)	68
BsmBI	CGTCTC	1 cut(s)	68
BsnI	GGCC	3 cut(s)	307, 374, 410
Bsp1286I	GDGCHC	2 cut(s)	359, 439
Bsp143I	GATC	6 cut(s)	240, 317, 361, 367, 539, 707
Bsp19I	CCATGG	2 cut(s)	18, 659
BspACI	CCGC	5 cut(s)	144, 375, 407, 694, 737
BspANI	GGCC	3 cut(s)	307, 374, 410
BspHI	TCATGA	1 cut(s)	561
BspLI	GGNNCC	1 cut(s)	438
BspMAI	CTGCAG	1 cut(s)	140
BspPI	GGATC	3 cut(s)	375, 547, 715
BspQI	GCTCTTC	2 cut(s)	125, 347
BspT107I	GGYRCC	1 cut(s)	436
BsrBI	CCGCTC	1 cut(s)	737
BsrFI	RCCGGY	1 cut(s)	213
BssAI	RCCGGY	1 cut(s)	213
BssECI	CCNNGG	5 cut(s)	18, 121, 192, 499, 659
BssMI	GATC	6 cut(s)	240, 317, 361, 367, 539, 707
BssSI	CACGAG	1 cut(s)	279
BssT1I	CCWWGG	4 cut(s)	18, 121, 499, 659
Bst2BI	CACGAG	1 cut(s)	279
Bst4CI	ACNGT	4 cut(s)	13, 37, 169, 536
Bst6I	CTCTTC	5 cut(s)	66, 125, 143, 347, 377
BstBAI	YACGTR	1 cut(s)	449
BstC8I	GCNNGC	1 cut(s)	692
BstDSI	CCRYGG	2 cut(s)	18, 659
BstF5I	GGATG	3 cut(s)	262, 436, 645
BstHHI	GCGC	2 cut(s)	106, 730
BstKTI	GATC	6 cut(s)	243, 320, 364, 370, 542, 710
BstMAI	GTCTC	1 cut(s)	68
BstMBI	GATC	6 cut(s)	240, 317, 361, 367, 539, 707
BstMWI	GCNNNNNNNGC	8 cut(s)	103, 123, 132, 141, 266, 272, 281, 734
BstSCI	CCNGG	1 cut(s)	97
BstSFI	CTRYAG	2 cut(s)	12, 136
BstSLI	GKGCMC	1 cut(s)	439
BstSNI	TACGTA	1 cut(s)	449
BstV1I	GCAGC	4 cut(s)	69, 122, 253, 402
BstV2I	GAAGAC	1 cut(s)	627
BsuRI	GGCC	3 cut(s)	307, 374, 410
BtgI	CCRYGG	2 cut(s)	18, 659
BtsCI	GGATG	3 cut(s)	262, 436, 645
Cac8I	GCNNGC	1 cut(s)	692
CciI	TCATGA	1 cut(s)	561
CfoI	GCGC	2 cut(s)	106, 730
Cfr10I	RCCGGY	1 cut(s)	213
CseI	GACGC	1 cut(s)	74
Csp6I	GTAC	4 cut(s)	9, 399, 469, 656
CviAII	CATG	4 cut(s)	19, 562, 660, 681
CviQI	GTAC	4 cut(s)	9, 399, 469, 656
DpnI	GATC	6 cut(s)	242, 319, 363, 369, 541, 709
DpnII	GATC	6 cut(s)	240, 317, 361, 367, 539, 707
EaeI	YGGCCR	1 cut(s)	305
Eam1104I	CTCTTC	5 cut(s)	66, 125, 143, 347, 377
EarI	CTCTTC	5 cut(s)	66, 125, 143, 347, 377
Eco105I	TACGTA	1 cut(s)	449
Eco130I	CCWWGG	4 cut(s)	18, 121, 499, 659
EcoT14I	CCWWGG	4 cut(s)	18, 121, 499, 659
ErhI	CCWWGG	4 cut(s)	18, 121, 499, 659
Esp3I	CGTCTC	1 cut(s)	68
FaeI	CATG	4 cut(s)	22, 565, 663, 684
FaiI	YATR	7 cut(s)	20, 428, 563, 606, 618, 661, 682
FatI	CATG	4 cut(s)	18, 561, 659, 680
FauI	CCCGC	1 cut(s)	137
FblI	GTMKAC	1 cut(s)	456
Fnu4HI	GCNGC	6 cut(s)	83, 136, 267, 375, 391, 408
FokI	GGATG	3 cut(s)	269, 443, 652
Fsp4HI	GCNGC	6 cut(s)	83, 136, 267, 375, 391, 408
FspBI	CTAG	6 cut(s)	6, 89, 396, 402, 500, 612
GlaI	GCGC	2 cut(s)	105, 729
GluI	GCNGC	6 cut(s)	83, 136, 267, 375, 391, 408
HaeIII	GGCC	3 cut(s)	307, 374, 410
HapII	CCGG	2 cut(s)	98, 214
HgaI	GACGC	1 cut(s)	74
HhaI	GCGC	2 cut(s)	106, 730
Hin1II	CATG	4 cut(s)	22, 565, 663, 684
Hin6I	GCGC	2 cut(s)	104, 728
HinP1I	GCGC	2 cut(s)	104, 728
HincII	GTYRAC	1 cut(s)	457
HindII	GTYRAC	1 cut(s)	457
HinfI	GANTC	1 cut(s)	677
HpaII	CCGG	2 cut(s)	98, 214
Hpy166II	GTNNAC	1 cut(s)	457
Hpy188I	TCNGA	7 cut(s)	163, 196, 317, 326, 591, 601, 712
Hpy188III	TCNNGA	4 cut(s)	244, 365, 562, 751
Hpy8I	GTNNAC	1 cut(s)	457
Hpy99I	CGWCG	2 cut(s)	341, 677
HpyAV	CCTTC	6 cut(s)	241, 247, 529, 547, 596, 697
HpyCH4III	ACNGT	4 cut(s)	13, 37, 169, 536
HpyCH4IV	ACGT	1 cut(s)	448
HpyCH4V	TGCA	3 cut(s)	138, 284, 684
HpyF10VI	GCNNNNNNNGC	8 cut(s)	103, 123, 132, 141, 266, 272, 281, 734
HpySE526I	ACGT	1 cut(s)	448
Hsp92II	CATG	4 cut(s)	22, 565, 663, 684
HspAI	GCGC	2 cut(s)	104, 728
Kzo9I	GATC	6 cut(s)	240, 317, 361, 367, 539, 707
LguI	GCTCTTC	2 cut(s)	125, 347
LmnI	GCTCC	4 cut(s)	79, 274, 280, 521
LpnPI	CCDG	8 cut(s)	31, 111, 204, 218, 227, 285, 350, 356
Lsp1109I	GCAGC	4 cut(s)	69, 122, 253, 402
LweI	GCATC	2 cut(s)	247, 630
MaeI	CTAG	6 cut(s)	6, 89, 396, 402, 500, 612
MaeII	ACGT	1 cut(s)	448
MaeIII	GTNAC	2 cut(s)	31, 530
MalI	GATC	6 cut(s)	242, 319, 363, 369, 541, 709
MbiI	CCGCTC	1 cut(s)	737
MboI	GATC	6 cut(s)	240, 317, 361, 367, 539, 707
MboII	GAAGA	6 cut(s)	83, 142, 160, 364, 394, 632
MhlI	GDGCHC	2 cut(s)	359, 439
MlsI	TGGCCA	1 cut(s)	307
MluCI	AATT	2 cut(s)	49, 184
MluNI	TGGCCA	1 cut(s)	307
MnlI	CCTC	5 cut(s)	34, 146, 202, 288, 706
Mox20I	TGGCCA	1 cut(s)	307
MroXI	GAANNNNTTC	1 cut(s)	557
MscI	TGGCCA	1 cut(s)	307
MseI	TTAA	1 cut(s)	417
Msp20I	TGGCCA	1 cut(s)	307
MspI	CCGG	2 cut(s)	98, 214
MspR9I	CCNGG	1 cut(s)	99
MwoI	GCNNNNNNNGC	8 cut(s)	103, 123, 132, 141, 266, 272, 281, 734
NciI	CCSGG	1 cut(s)	99
NcoI	CCATGG	2 cut(s)	18, 659
NdeII	GATC	6 cut(s)	240, 317, 361, 367, 539, 707
NlaIII	CATG	4 cut(s)	22, 565, 663, 684
NlaIV	GGNNCC	1 cut(s)	438
NmeAIII	GCCGAG	2 cut(s)	403, 756
PagI	TCATGA	1 cut(s)	561
PciSI	GCTCTTC	2 cut(s)	125, 347
PdmI	GAANNNNTTC	1 cut(s)	557
PfeI	GAWTC	1 cut(s)	677
PkrI	GCNGC	6 cut(s)	84, 137, 268, 376, 392, 409
Ppu21I	YACGTR	1 cut(s)	449
PspN4I	GGNNCC	1 cut(s)	438
PstI	CTGCAG	1 cut(s)	140
RsaI	GTAC	4 cut(s)	10, 400, 470, 657
RsaNI	GTAC	4 cut(s)	9, 399, 469, 656
SalI	GTCGAC	1 cut(s)	455
SapI	GCTCTTC	2 cut(s)	125, 347
SaqAI	TTAA	1 cut(s)	417
SatI	GCNGC	6 cut(s)	83, 136, 267, 375, 391, 408
Sau3AI	GATC	6 cut(s)	240, 317, 361, 367, 539, 707
ScaI	AGTACT	2 cut(s)	10, 400
ScrFI	CCNGG	1 cut(s)	99
SduI	GDGCHC	2 cut(s)	359, 439
SfaNI	GCATC	2 cut(s)	247, 630
SfcI	CTRYAG	2 cut(s)	12, 136
SmlI	CTYRAG	1 cut(s)	291
SmoI	CTYRAG	1 cut(s)	291
SnaBI	TACGTA	1 cut(s)	449
SpeI	ACTAGT	3 cut(s)	5, 395, 401
Sse9I	AATT	2 cut(s)	49, 184
SsiI	CCGC	5 cut(s)	144, 375, 407, 694, 737
SspMI	CTAG	6 cut(s)	6, 89, 396, 402, 500, 612
StyD4I	CCNGG	1 cut(s)	97
StyI	CCWWGG	4 cut(s)	18, 121, 499, 659
TaaI	ACNGT	4 cut(s)	13, 37, 169, 536
TaiI	ACGT	1 cut(s)	451
TaqI	TCGA	2 cut(s)	456, 675
TasI	AATT	2 cut(s)	49, 184
TatI	WGTACW	2 cut(s)	8, 398
TauI	GCSGC	2 cut(s)	377, 410
TfiI	GAWTC	1 cut(s)	677
Tru1I	TTAA	1 cut(s)	417
Tru9I	TTAA	1 cut(s)	417
TseI	GCWGC	4 cut(s)	82, 135, 266, 390
TspDTI	ATGAA	6 cut(s)	550, 566, 578, 633, 669, 716
TspGWI	ACGGA	1 cut(s)	92
XmaJI	CCTAGG	1 cut(s)	499
XmiI	GTMKAC	1 cut(s)	456
XmnI	GAANNNNTTC	1 cut(s)	557
XspI	CTAG	6 cut(s)	6, 89, 396, 402, 500, 612
ZrmI	AGTACT	2 cut(s)	10, 400

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.