Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0009806

Physical Location & Seq

Genomic Coordinates Forward (+)

29582130 .. 29585218

Gene Structure 3089 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G343800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGAGTACCGTGACTCATGAAGGGCAGCATCAGAAATATAGCTTGATAAATTTTGAAGAGACTGAACTGCGCCTGGGGTTGCCTGGTGGAATAGCTAATCCTGGAAAGGATGGAGAAGCTGCCAAGAACAATGGGAAGAGAGGTTTCTCAGAAACTGTTGATTTAAAGCTCAATATCTCATCTCAAGATGAGACAGCTGATGAGGATGATCAAGATCAACAACTACTGGAGTTGAAGAAGGAAAAGAATGCTGCTGCACCTGCTCCCGGGGCAAATGACCCATCTAAACCCCCTGCTTCCAAGGCTCAAGTTGTGGGTTGGCCACCCGTCCGATCTTTCCGAAAGAACATCGCGACCGTCCAAAAGAAGAGCTCGGACGAGGGTGAAAAGAGCAACAGCAATATCAGTGCAGCATTTGTAAAAGTAAGCATGGATGGGGCGCCCTATCTGCGTAAAGTTGACTTGAAGTTGTACAAGAGCTACCAGGAGCTGTCTACTGCCTTGGGGAAAATGTTCAGCTCCTTCACCATCGGTAACTGCGGGTCAGATGGAATGAAGGATTTCATGAACGAGAGCAAACTGATAGACCTTCTGAATGGTTCTGATTATGTGCCTACTTATGAGGACAAGGATGGAGATTGGATGCTTGTGGGGGATGTGCCATGGGGAATGTTTGTTGATTCATGCAAACGCTTGCGGATAATGAAAGGATCTGAGGCCATTGGACTTGCACCCAGGGCCGTGGAGAAGTGCAAGAACAGATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

256

Amino Acids

27.91

Weight (kDa)

5.86

Isoelectric Point (pI)

36.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009806)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04730
fragaria_vesca	FvH4_6g02860
malus_domestica	MD04G1225100.v1.1 MD12G1241800.v1.1
prunus_persica	Prupe.6G343800_v2.0.a1 Prupe.6G343800_v2.0.a1 Prupe.6G343800_v2.0.a1
pyrus_communis	pycom04g19840 pycom12g22140
rosa_chinensis	RchiOBHm_Chr3g0451071
rosa_laevigata	RLG00000025694
rosa_multiflora	Rmu_sc0000078.1_g000001 Rmu_sc0023022.1_g000001 Rmu_ssc0000461.1_g000002
rosa_roxburghii	Rroxscaffold_6G00428540
rosa_rugosa	Rorug02G0631000
rosa_samantha	Rh3AG033800 Rh3BG034000 Rh3CG032700 Rh3DG033800
rosa_wichuraiana	Rw3G002450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	268
Acc36I	ACCTGC	1 cut(s)	268
AccB1I	GGYRCC	1 cut(s)	439
AccI	GTMKAC	1 cut(s)	494
AccII	CGCG	1 cut(s)	353
AciI	CCGC	2 cut(s)	540, 697
AclWI	GGATC	1 cut(s)	718
AcoI	YGGCCR	1 cut(s)	320
AcsI	RAATTY	1 cut(s)	49
AcyI	GRCGYC	1 cut(s)	440
AfaI	GTAC	2 cut(s)	7, 473
AfiI	CCNNNNNNNGG	1 cut(s)	266
AgsI	TTSAA	3 cut(s)	56, 235, 466
AjnI	CCWGG	5 cut(s)	72, 82, 100, 483, 734
AluBI	AGCT	9 cut(s)	42, 95, 119, 169, 197, 372, 480, 490, 519
AluI	AGCT	9 cut(s)	42, 95, 119, 169, 197, 372, 480, 490, 519
Alw21I	GWGCWC	1 cut(s)	374
Alw26I	GTCTC	2 cut(s)	53, 185
AlwI	GGATC	1 cut(s)	718
AlwNI	CAGNNNCTG	2 cut(s)	155, 490
Ama87I	CYCGRG	1 cut(s)	266
AoxI	GGCC	3 cut(s)	320, 717, 738
ApeKI	GCWGC	5 cut(s)	25, 119, 251, 254, 410
ApoI	RAATTY	1 cut(s)	49
Asp700I	GAANNNNTTC	2 cut(s)	512, 560
AspLEI	GCGC	2 cut(s)	72, 442
AspS9I	GGNCC	1 cut(s)	738
AsuC2I	CCSGG	2 cut(s)	267, 268
AsuHPI	GGTGA	2 cut(s)	395, 517
AvaI	CYCGRG	1 cut(s)	266
BalI	TGGCCA	1 cut(s)	322
BanI	GGYRCC	1 cut(s)	439
BanII	GRGCYC	1 cut(s)	374
Bbv12I	GWGCWC	1 cut(s)	374
BbvI	GCAGC	5 cut(s)	37, 106, 238, 241, 422
BccI	CCATC	6 cut(s)	104, 289, 428, 536, 542, 626
BceAI	ACGGC	1 cut(s)	725
BciT130I	CCWGG	5 cut(s)	74, 84, 102, 485, 736
BclI	TGATCA	1 cut(s)	208
BcnI	CCSGG	2 cut(s)	267, 268
BcoDI	GTCTC	2 cut(s)	53, 185
BfoI	RGCGCY	1 cut(s)	443
BfuAI	ACCTGC	1 cut(s)	268
BisI	GCNGC	5 cut(s)	26, 120, 252, 255, 411
BlsI	GCNGC	5 cut(s)	27, 121, 253, 256, 412
Bme1390I	CCNGG	7 cut(s)	74, 84, 102, 267, 268, 485, 736
BmeT110I	CYCGRG	1 cut(s)	266
BmgT120I	GGNCC	1 cut(s)	738
BmiI	GGNNCC	1 cut(s)	441
BmrFI	CCNGG	7 cut(s)	74, 84, 102, 267, 268, 485, 736
BmsI	GCATC	2 cut(s)	37, 633
BpmI	CTGGAG	1 cut(s)	248
BpuEI	CTTGAG	2 cut(s)	168, 291
BpuMI	CCSGG	2 cut(s)	267, 268
BsaBI	GATNNNNATC	1 cut(s)	213
BsaHI	GRCGYC	1 cut(s)	440
BsaJI	CCNNGG	9 cut(s)	73, 266, 267, 300, 501, 662, 734, 735, 741
Bsc4I	CCNNNNNNNGG	1 cut(s)	266
Bse1I	ACTGG	1 cut(s)	231
Bse8I	GATNNNNATC	1 cut(s)	213
BseBI	CCWGG	5 cut(s)	74, 84, 102, 485, 736
BseDI	CCNNGG	9 cut(s)	73, 266, 267, 300, 501, 662, 734, 735, 741
BseGI	GGATG	6 cut(s)	115, 211, 439, 637, 648, 661
BseJI	GATNNNNATC	1 cut(s)	213
BseLI	CCNNNNNNNGG	1 cut(s)	266
BseMII	CTCAG	2 cut(s)	162, 705
BseNI	ACTGG	1 cut(s)	231
BseXI	GCAGC	5 cut(s)	37, 106, 238, 241, 422
BsgI	GTGCAG	2 cut(s)	240, 429
Bsh1236I	CGCG	1 cut(s)	353
Bsh1285I	CGRYCG	1 cut(s)	357
BshFI	GGCC	3 cut(s)	322, 719, 740
BshNI	GGYRCC	1 cut(s)	439
BsiEI	CGRYCG	1 cut(s)	357
BsiHKAI	GWGCWC	1 cut(s)	374
BsiHKCI	CYCGRG	1 cut(s)	266
BsiSI	CCGG	1 cut(s)	267
BslI	CCNNNNNNNGG	1 cut(s)	266
BsmAI	GTCTC	2 cut(s)	53, 185
BsmI	GAATGC	1 cut(s)	253
BsnI	GGCC	3 cut(s)	322, 719, 740
BsoBI	CYCGRG	1 cut(s)	266
Bsp1286I	GDGCHC	1 cut(s)	374
Bsp1407I	TGTACA	1 cut(s)	471
Bsp143I	GATC	4 cut(s)	208, 214, 332, 710
Bsp19I	CCATGG	1 cut(s)	662
Bsp68I	TCGCGA	1 cut(s)	353
BspACI	CCGC	2 cut(s)	540, 697
BspANI	GGCC	3 cut(s)	322, 719, 740
BspCNI	CTCAG	2 cut(s)	161, 706
BspFNI	CGCG	1 cut(s)	353
BspHI	TCATGA	2 cut(s)	16, 564
BspLI	GGNNCC	1 cut(s)	441
BspMI	ACCTGC	1 cut(s)	268
BspPI	GGATC	1 cut(s)	718
BspQI	GCTCTTC	1 cut(s)	362
BspT107I	GGYRCC	1 cut(s)	439
BsrGI	TGTACA	1 cut(s)	471
BsrI	ACTGG	1 cut(s)	231
BssECI	CCNNGG	9 cut(s)	73, 266, 267, 300, 501, 662, 734, 735, 741
BssMI	GATC	4 cut(s)	208, 214, 332, 710
BssNI	GRCGYC	1 cut(s)	440
BssT1I	CCWWGG	3 cut(s)	300, 501, 662
Bst2UI	CCWGG	5 cut(s)	74, 84, 102, 485, 736
Bst4CI	ACNGT	3 cut(s)	10, 157, 358
Bst6I	CTCTTC	3 cut(s)	51, 131, 362
BstACI	GRCGYC	1 cut(s)	440
BstAUI	TGTACA	1 cut(s)	471
BstC8I	GCNNGC	1 cut(s)	695
BstDEI	CTNAG	2 cut(s)	148, 714
BstDSI	CCRYGG	2 cut(s)	662, 741
BstF5I	GGATG	6 cut(s)	115, 211, 439, 637, 648, 661
BstFNI	CGCG	1 cut(s)	353
BstH2I	RGCGCY	1 cut(s)	443
BstHHI	GCGC	2 cut(s)	72, 442
BstKTI	GATC	4 cut(s)	211, 217, 335, 713
BstMAI	GTCTC	2 cut(s)	53, 185
BstMBI	GATC	4 cut(s)	208, 214, 332, 710
BstMCI	CGRYCG	1 cut(s)	357
BstMWI	GCNNNNNNNGC	5 cut(s)	260, 269, 302, 448, 737
BstNI	CCWGG	5 cut(s)	74, 84, 102, 485, 736
BstSCI	CCNGG	7 cut(s)	72, 82, 100, 265, 266, 483, 734
BstUI	CGCG	1 cut(s)	353
BstV1I	GCAGC	5 cut(s)	37, 106, 238, 241, 422
BstX2I	RGATCY	1 cut(s)	710
BstXI	CCANNNNNNTGG	1 cut(s)	742
BstYI	RGATCY	1 cut(s)	710
BsuRI	GGCC	3 cut(s)	322, 719, 740
BtgI	CCRYGG	2 cut(s)	662, 741
BtgZI	GCGATG	1 cut(s)	334
BtsCI	GGATG	6 cut(s)	115, 211, 439, 637, 648, 661
BtsIMutI	CAGTG	1 cut(s)	412
BtuMI	TCGCGA	1 cut(s)	353
BveI	ACCTGC	1 cut(s)	268
Cac8I	GCNNGC	1 cut(s)	695
CaiI	CAGNNNCTG	2 cut(s)	155, 490
CciI	TCATGA	2 cut(s)	16, 564
CfoI	GCGC	2 cut(s)	72, 442
Cfr13I	GGNCC	1 cut(s)	738
Cfr9I	CCCGGG	1 cut(s)	266
Csp6I	GTAC	2 cut(s)	6, 472
CviAII	CATG	5 cut(s)	17, 430, 565, 663, 684
CviQI	GTAC	2 cut(s)	6, 472
DdeI	CTNAG	2 cut(s)	148, 714
DinI	GGCGCC	1 cut(s)	441
DpnI	GATC	4 cut(s)	210, 216, 334, 712
DpnII	GATC	4 cut(s)	208, 214, 332, 710
DraI	TTTAAA	1 cut(s)	165
EaeI	YGGCCR	1 cut(s)	320
Eam1104I	CTCTTC	3 cut(s)	51, 131, 362
EarI	CTCTTC	3 cut(s)	51, 131, 362
Ecl136II	GAGCTC	1 cut(s)	372
Eco130I	CCWWGG	3 cut(s)	300, 501, 662
Eco24I	GRGCYC	1 cut(s)	374
Eco53kI	GAGCTC	1 cut(s)	372
Eco88I	CYCGRG	1 cut(s)	266
EcoICRI	GAGCTC	1 cut(s)	372
EcoRII	CCWGG	5 cut(s)	72, 82, 100, 483, 734
EcoT14I	CCWWGG	3 cut(s)	300, 501, 662
EcoT38I	GRGCYC	1 cut(s)	374
EgeI	GGCGCC	1 cut(s)	441
EheI	GGCGCC	1 cut(s)	441
ErhI	CCWWGG	3 cut(s)	300, 501, 662
FaeI	CATG	5 cut(s)	20, 433, 568, 666, 687
FaiI	YATR	8 cut(s)	18, 39, 431, 566, 609, 621, 664, 685
FatI	CATG	5 cut(s)	16, 429, 564, 662, 683
FauI	CCCGC	1 cut(s)	533
FbaI	TGATCA	1 cut(s)	208
FblI	GTMKAC	1 cut(s)	494
Fnu4HI	GCNGC	5 cut(s)	26, 120, 252, 255, 411
FokI	GGATG	6 cut(s)	122, 218, 446, 644, 655, 668
FriOI	GRGCYC	1 cut(s)	374
Fsp4HI	GCNGC	5 cut(s)	26, 120, 252, 255, 411
GlaI	GCGC	2 cut(s)	71, 441
GluI	GCNGC	5 cut(s)	26, 120, 252, 255, 411
GsuI	CTGGAG	1 cut(s)	248
HaeII	RGCGCY	1 cut(s)	443
HaeIII	GGCC	3 cut(s)	322, 719, 740
HapII	CCGG	1 cut(s)	267
HhaI	GCGC	2 cut(s)	72, 442
Hin1I	GRCGYC	1 cut(s)	440
Hin1II	CATG	5 cut(s)	20, 433, 568, 666, 687
Hin6I	GCGC	2 cut(s)	70, 440
HinP1I	GCGC	2 cut(s)	70, 440
HincII	GTYRAC	1 cut(s)	460
HindII	GTYRAC	1 cut(s)	460
HinfI	GANTC	2 cut(s)	13, 680
HpaII	CCGG	1 cut(s)	267
HphI	GGTGA	2 cut(s)	395, 517
Hpy166II	GTNNAC	2 cut(s)	460, 495
Hpy188I	TCNGA	9 cut(s)	33, 151, 332, 341, 376, 547, 594, 604, 715
Hpy188III	TCNNGA	5 cut(s)	17, 185, 212, 352, 565
Hpy8I	GTNNAC	2 cut(s)	460, 495
HpyAV	CCTTC	5 cut(s)	14, 232, 532, 550, 599
HpyCH4III	ACNGT	3 cut(s)	10, 157, 358
HpyCH4V	TGCA	5 cut(s)	257, 410, 687, 731, 753
HpyF10VI	GCNNNNNNNGC	5 cut(s)	260, 269, 302, 448, 737
HpyF3I	CTNAG	2 cut(s)	148, 714
Hsp92I	GRCGYC	1 cut(s)	440
Hsp92II	CATG	5 cut(s)	20, 433, 568, 666, 687
HspAI	GCGC	2 cut(s)	70, 440
KasI	GGCGCC	1 cut(s)	439
Ksp22I	TGATCA	1 cut(s)	208
Kzo9I	GATC	4 cut(s)	208, 214, 332, 710
LguI	GCTCTTC	1 cut(s)	362
LmnI	GCTCC	3 cut(s)	268, 487, 524
Lsp1109I	GCAGC	5 cut(s)	37, 106, 238, 241, 422
LweI	GCATC	2 cut(s)	37, 633
MaeIII	GTNAC	2 cut(s)	10, 533
MalI	GATC	4 cut(s)	210, 216, 334, 712
MboI	GATC	4 cut(s)	208, 214, 332, 710
MboII	GAAGA	4 cut(s)	68, 148, 247, 379
MflI	RGATCY	1 cut(s)	710
MhlI	GDGCHC	1 cut(s)	374
MlsI	TGGCCA	1 cut(s)	322
MluCI	AATT	1 cut(s)	49
MluNI	TGGCCA	1 cut(s)	322
Mly113I	GGCGCC	1 cut(s)	440
MlyI	GAGTC	1 cut(s)	7
MnlI	CCTC	5 cut(s)	134, 196, 373, 616, 709
Mox20I	TGGCCA	1 cut(s)	322
MroXI	GAANNNNTTC	2 cut(s)	512, 560
MscI	TGGCCA	1 cut(s)	322
MseI	TTAA	1 cut(s)	164
Msp20I	TGGCCA	1 cut(s)	322
MspA1I	CMGCKG	1 cut(s)	197
MspI	CCGG	1 cut(s)	267
MspR9I	CCNGG	7 cut(s)	74, 84, 102, 267, 268, 485, 736
Mva1269I	GAATGC	1 cut(s)	253
MvaI	CCWGG	5 cut(s)	74, 84, 102, 485, 736
MvnI	CGCG	1 cut(s)	353
MwoI	GCNNNNNNNGC	5 cut(s)	260, 269, 302, 448, 737
NarI	GGCGCC	1 cut(s)	440
NciI	CCSGG	2 cut(s)	267, 268
NcoI	CCATGG	1 cut(s)	662
NdeII	GATC	4 cut(s)	208, 214, 332, 710
NlaIII	CATG	5 cut(s)	20, 433, 568, 666, 687
NlaIV	GGNNCC	1 cut(s)	441
NmuCI	GTSAC	1 cut(s)	10
NruI	TCGCGA	1 cut(s)	353
PagI	TCATGA	2 cut(s)	16, 564
PaqCI	CACCTGC	1 cut(s)	268
PasI	CCCWGGG	1 cut(s)	735
PciSI	GCTCTTC	1 cut(s)	362
PctI	GAATGC	1 cut(s)	253
PdmI	GAANNNNTTC	2 cut(s)	512, 560
PfeI	GAWTC	1 cut(s)	680
PfoI	TCCNGGA	1 cut(s)	100
PkrI	GCNGC	5 cut(s)	27, 121, 253, 256, 412
PleI	GAGTC	1 cut(s)	7
PluTI	GGCGCC	1 cut(s)	443
PpsI	GAGTC	1 cut(s)	7
Psp124BI	GAGCTC	1 cut(s)	374
Psp6I	CCWGG	5 cut(s)	72, 82, 100, 483, 734
PspGI	CCWGG	5 cut(s)	72, 82, 100, 483, 734
PspN4I	GGNNCC	1 cut(s)	441
PspPI	GGNCC	1 cut(s)	738
PstNI	CAGNNNCTG	2 cut(s)	155, 490
PsuI	RGATCY	1 cut(s)	710
PvuII	CAGCTG	1 cut(s)	197
RruI	TCGCGA	1 cut(s)	353
RsaI	GTAC	2 cut(s)	7, 473
RsaNI	GTAC	2 cut(s)	6, 472
SacI	GAGCTC	1 cut(s)	374
SapI	GCTCTTC	1 cut(s)	362
SaqAI	TTAA	1 cut(s)	164
SatI	GCNGC	5 cut(s)	26, 120, 252, 255, 411
Sau3AI	GATC	4 cut(s)	208, 214, 332, 710
Sau96I	GGNCC	1 cut(s)	738
SchI	GAGTC	1 cut(s)	7
ScrFI	CCNGG	7 cut(s)	74, 84, 102, 267, 268, 485, 736
SduI	GDGCHC	1 cut(s)	374
SfaNI	GCATC	2 cut(s)	37, 633
SfoI	GGCGCC	1 cut(s)	441
SmaI	CCCGGG	1 cut(s)	268
SmlI	CTYRAG	2 cut(s)	183, 306
SmoI	CTYRAG	2 cut(s)	183, 306
Sse9I	AATT	1 cut(s)	49
SsiI	CCGC	2 cut(s)	540, 697
SspDI	GGCGCC	1 cut(s)	439
SstI	GAGCTC	1 cut(s)	374
StyD4I	CCNGG	7 cut(s)	72, 82, 100, 265, 266, 483, 734
StyI	CCWWGG	3 cut(s)	300, 501, 662
TaaI	ACNGT	3 cut(s)	10, 157, 358
TasI	AATT	1 cut(s)	49
TatI	WGTACW	1 cut(s)	471
TfiI	GAWTC	1 cut(s)	680
Tru1I	TTAA	1 cut(s)	164
Tru9I	TTAA	1 cut(s)	164
TscAI	CASTG	1 cut(s)	412
TseFI	GTSAC	1 cut(s)	10
TseI	GCWGC	5 cut(s)	25, 119, 251, 254, 410
Tsp45I	GTSAC	1 cut(s)	10
TspDTI	ATGAA	6 cut(s)	33, 553, 569, 581, 672, 719
TspMI	CCCGGG	1 cut(s)	266
TspRI	CASTG	1 cut(s)	412
XapI	RAATTY	1 cut(s)	49
XmaI	CCCGGG	1 cut(s)	266
XmiI	GTMKAC	1 cut(s)	494
XmnI	GAANNNNTTC	2 cut(s)	512, 560

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.