Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009875

Physical Location & Seq

Genomic Coordinates Reverse (-)

1314479 .. 1315045

Gene Structure 567 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G04800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGGCGGATCCGATGAACCATAGCACCGGGCATCAACAACAGCAGAAGTACCGTCAGTACAATCCTTACCAACAAGTCAATCTTCCGTACCGTAAGCTCTACGAACTCCCAACTTCTCCTGAGTTTCTCTTCGAAGAAGAAGCTACGAAAAAACGCTTAACATGGGGAGAGAACCTCACCTTCTTCACCGGTTGGGGTTATTGCACTGGATCTGTTCTCGGAGCCTTCAAGGGTACAATTGCGGGGATGCGAGCCGCCGAACGAGGCGAATCCCTAAAGATCCGAACTAATCGGATTTTGAACTCCGGTGGACTCGTTGCAAGACGCGGCGGGAATTGCTTAGGATCCGTAGGGTTGATGTTTGCTGCTATGGAGAGCGGTGTTACGTATATGAGAGACGGAGACGACGGTTCGTTGACAACTGTGATCGCTGGTTTAGCCACTGGTGTGCTTTACAGAGCTGCTTCTGGACCTAGATCCGCTGTGGTTGCCGGAGCTGTCGGAGGAGTTGCGGCTTTGGCTGCAGTTGCTGGAAGACGCATCGTCAAGCGATTCGTTCCAATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005744 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0017038 GO:0019866 GO:0030150 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031304 GO:0031305 GO:0031966 GO:0031967 GO:0031975 GO:0032592 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0098573 GO:0098796 GO:0098798 GO:0098800 GO:1990542

KEGG Pathways

Metabolic & Signaling

ko04212 map04212

Pfam Domains

Protein Families

Tim17

Protein Analysis

188

Amino Acids

20.21

Weight (kDa)

9.84

Isoelectric Point (pI)

29.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tim17	PF02466	61 - 172	8.7e-20	Tim17/Tim22/Tim23/Pmp24 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009875)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04800
fragaria_vesca	FvH4_6g03320
rosa_chinensis	RchiOBHm_Chr3g0451811
rosa_laevigata	RLG00000025647 RLG00000033674
rosa_multiflora	Rmu_sc0001152.1_g000039 Rmu_sc0002314.1_g000001 Rmu_sc0006510.1_g000015 Rmu_sc0012070.1_g000001
rosa_roxburghii	Rroxscaffold_164G00436300 Rroxscaffold_6G00428990
rosa_rugosa	Rorug02G0636500
rosa_samantha	Rh3AG038000 Rh3BG039100 Rh3BG039200 Rh3CG037600 Rh3CG037700 Rh3DG038400 Rh3DG038500 Rh5DG439200
rosa_wichuraiana	Rw3G002830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	378
AccII	CGCG	1 cut(s)	327
AciI	CCGC	8 cut(s)	5, 242, 255, 327, 330, 378, 480, 512
AclWI	GGATC	7 cut(s)	2, 15, 217, 274, 339, 352, 471
AfaI	GTAC	4 cut(s)	50, 59, 89, 235
AgeI	ACCGGT	1 cut(s)	188
AgsI	TTSAA	2 cut(s)	229, 301
AhdI	GACNNNNNGTC	1 cut(s)	542
AleI	CACNNNNGTG	1 cut(s)	446
AluBI	AGCT	4 cut(s)	97, 143, 461, 497
AluI	AGCT	4 cut(s)	97, 143, 461, 497
Alw26I	GTCTC	2 cut(s)	390, 396
AlwI	GGATC	7 cut(s)	2, 15, 217, 274, 339, 352, 471
AlwNI	CAGNNNCTG	1 cut(s)	530
ApeKI	GCWGC	3 cut(s)	365, 461, 521
AsiGI	ACCGGT	1 cut(s)	188
AspS9I	GGNCC	1 cut(s)	470
AsuC2I	CCSGG	1 cut(s)	28
AsuHPI	GGTGA	2 cut(s)	169, 178
AsuII	TTCGAA	1 cut(s)	132
AvaII	GGWCC	1 cut(s)	470
BamHI	GGATCC	2 cut(s)	7, 344
BbsI	GAAGAC	1 cut(s)	541
BbvI	GCAGC	3 cut(s)	352, 448, 508
BcnI	CCSGG	1 cut(s)	28
BcoDI	GTCTC	2 cut(s)	390, 396
BfaI	CTAG	1 cut(s)	474
BfmI	CTRYAG	1 cut(s)	522
BisI	GCNGC	6 cut(s)	255, 328, 366, 462, 513, 522
BlsI	GCNGC	6 cut(s)	256, 329, 367, 463, 514, 523
Bme1390I	CCNGG	1 cut(s)	28
Bme18I	GGWCC	1 cut(s)	470
BmeRI	GACNNNNNGTC	1 cut(s)	542
BmgT120I	GGNCC	1 cut(s)	470
BmiI	GGNNCC	3 cut(s)	9, 223, 346
BmrFI	CCNGG	1 cut(s)	28
BmsI	GCATC	3 cut(s)	40, 237, 549
BpiI	GAAGAC	1 cut(s)	541
BplI	GAGNNNNNCTC	2 cut(s)	159, 191
Bpu10I	CCTNAGC	1 cut(s)	340
Bpu14I	TTCGAA	1 cut(s)	132
BpuMI	CCSGG	1 cut(s)	28
BsaAI	YACGTR	1 cut(s)	387
BsaWI	WCCGGW	2 cut(s)	188, 305
Bse118I	RCCGGY	1 cut(s)	188
Bse1I	ACTGG	2 cut(s)	211, 448
BseGI	GGATG	1 cut(s)	252
BseMII	CTCAG	1 cut(s)	111
BseNI	ACTGG	2 cut(s)	211, 448
BseRI	GAGGAG	1 cut(s)	519
BseXI	GCAGC	3 cut(s)	352, 448, 508
Bsh1236I	CGCG	1 cut(s)	327
BshTI	ACCGGT	1 cut(s)	188
BsiSI	CCGG	4 cut(s)	27, 189, 306, 492
BsmAI	GTCTC	2 cut(s)	390, 396
BsmBI	CGTCTC	2 cut(s)	390, 396
Bsp119I	TTCGAA	1 cut(s)	132
Bsp143I	GATC	6 cut(s)	7, 209, 279, 344, 426, 476
BspACI	CCGC	8 cut(s)	5, 242, 255, 327, 330, 378, 480, 512
BspCNI	CTCAG	1 cut(s)	112
BspFNI	CGCG	1 cut(s)	327
BspLI	GGNNCC	3 cut(s)	9, 223, 346
BspMAI	CTGCAG	1 cut(s)	526
BspPI	GGATC	7 cut(s)	2, 15, 217, 274, 339, 352, 471
BspT104I	TTCGAA	1 cut(s)	132
BsrBI	CCGCTC	1 cut(s)	378
BsrFI	RCCGGY	1 cut(s)	188
BsrI	ACTGG	2 cut(s)	211, 448
BssAI	RCCGGY	1 cut(s)	188
BssMI	GATC	6 cut(s)	7, 209, 279, 344, 426, 476
Bst4CI	ACNGT	4 cut(s)	53, 92, 410, 424
Bst6I	CTCTTC	1 cut(s)	134
BstBAI	YACGTR	1 cut(s)	387
BstBI	TTCGAA	1 cut(s)	132
BstC8I	GCNNGC	1 cut(s)	252
BstDEI	CTNAG	2 cut(s)	120, 340
BstF5I	GGATG	1 cut(s)	252
BstFNI	CGCG	1 cut(s)	327
BstKTI	GATC	6 cut(s)	10, 212, 282, 347, 429, 479
BstMAI	GTCTC	2 cut(s)	390, 396
BstMBI	GATC	6 cut(s)	7, 209, 279, 344, 426, 476
BstMWI	GCNNNNNNNGC	6 cut(s)	336, 437, 488, 518, 521, 527
BstSCI	CCNGG	1 cut(s)	26
BstSFI	CTRYAG	1 cut(s)	522
BstSNI	TACGTA	1 cut(s)	387
BstUI	CGCG	1 cut(s)	327
BstV1I	GCAGC	3 cut(s)	352, 448, 508
BstV2I	GAAGAC	1 cut(s)	541
BstX2I	RGATCY	5 cut(s)	7, 209, 279, 344, 476
BstYI	RGATCY	5 cut(s)	7, 209, 279, 344, 476
BtsCI	GGATG	1 cut(s)	252
BtsIMutI	CAGTG	2 cut(s)	204, 441
Cac8I	GCNNGC	1 cut(s)	252
CaiI	CAGNNNCTG	1 cut(s)	530
Cfr10I	RCCGGY	1 cut(s)	188
Cfr13I	GGNCC	1 cut(s)	470
CseI	GACGC	2 cut(s)	333, 546
Csp6I	GTAC	4 cut(s)	49, 58, 88, 234
CspAI	ACCGGT	1 cut(s)	188
CviAII	CATG	1 cut(s)	162
CviJI	RGCY	9 cut(s)	97, 143, 224, 254, 440, 461, 497, 515, 521
CviKI_1	RGCY	9 cut(s)	97, 143, 224, 254, 440, 461, 497, 515, 521
CviQI	GTAC	4 cut(s)	49, 58, 88, 234
DdeI	CTNAG	2 cut(s)	120, 340
DpnI	GATC	6 cut(s)	9, 211, 281, 346, 428, 478
DpnII	GATC	6 cut(s)	7, 209, 279, 344, 426, 476
DriI	GACNNNNNGTC	1 cut(s)	542
Eam1104I	CTCTTC	1 cut(s)	134
Eam1105I	GACNNNNNGTC	1 cut(s)	542
EarI	CTCTTC	1 cut(s)	134
EciI	GGCGGA	1 cut(s)	20
Eco105I	TACGTA	1 cut(s)	387
Eco47I	GGWCC	1 cut(s)	470
Esp3I	CGTCTC	2 cut(s)	390, 396
FaeI	CATG	1 cut(s)	165
FaiI	YATR	5 cut(s)	21, 163, 371, 390, 392
FalI	AAGNNNNNCTT	2 cut(s)	66, 98
FatI	CATG	1 cut(s)	161
FauI	CCCGC	2 cut(s)	235, 323
Fnu4HI	GCNGC	6 cut(s)	255, 328, 366, 462, 513, 522
FokI	GGATG	1 cut(s)	259
Fsp4HI	GCNGC	6 cut(s)	255, 328, 366, 462, 513, 522
FspBI	CTAG	1 cut(s)	474
GluI	GCNGC	6 cut(s)	255, 328, 366, 462, 513, 522
HapII	CCGG	4 cut(s)	27, 189, 306, 492
HgaI	GACGC	2 cut(s)	333, 546
Hin1II	CATG	1 cut(s)	165
HincII	GTYRAC	1 cut(s)	417
HindII	GTYRAC	1 cut(s)	417
HinfI	GANTC	3 cut(s)	269, 312, 552
HpaII	CCGG	4 cut(s)	27, 189, 306, 492
HphI	GGTGA	2 cut(s)	169, 178
Hpy166II	GTNNAC	2 cut(s)	311, 417
Hpy188I	TCNGA	5 cut(s)	12, 221, 284, 294, 503
Hpy188III	TCNNGA	2 cut(s)	119, 468
Hpy8I	GTNNAC	2 cut(s)	311, 417
Hpy99I	CGWCG	1 cut(s)	410
HpyAV	CCTTC	2 cut(s)	190, 235
HpyCH4III	ACNGT	4 cut(s)	53, 92, 410, 424
HpyCH4IV	ACGT	1 cut(s)	386
HpyCH4V	TGCA	3 cut(s)	204, 320, 524
HpyF10VI	GCNNNNNNNGC	6 cut(s)	336, 437, 488, 518, 521, 527
HpyF3I	CTNAG	2 cut(s)	120, 340
HpySE526I	ACGT	1 cut(s)	386
Hsp92II	CATG	1 cut(s)	165
Kzo9I	GATC	6 cut(s)	7, 209, 279, 344, 426, 476
LmnI	GCTCC	2 cut(s)	221, 494
Lsp1109I	GCAGC	3 cut(s)	352, 448, 508
LweI	GCATC	3 cut(s)	40, 237, 549
MaeI	CTAG	1 cut(s)	474
MaeII	ACGT	1 cut(s)	386
MaeIII	GTNAC	1 cut(s)	382
MalI	GATC	6 cut(s)	9, 211, 281, 346, 428, 478
MbiI	CCGCTC	1 cut(s)	378
MboI	GATC	6 cut(s)	7, 209, 279, 344, 426, 476
MboII	GAAGA	6 cut(s)	74, 121, 146, 149, 175, 546
MfeI	CAATTG	1 cut(s)	237
MflI	RGATCY	5 cut(s)	7, 209, 279, 344, 476
MluCI	AATT	2 cut(s)	237, 334
MlyI	GAGTC	1 cut(s)	306
MmeI	TCCRAC	1 cut(s)	481
MnlI	CCTC	3 cut(s)	185, 257, 497
MseI	TTAA	1 cut(s)	158
MslI	CAYNNNNRTG	1 cut(s)	446
MspA1I	CMGCKG	1 cut(s)	482
MspI	CCGG	4 cut(s)	27, 189, 306, 492
MspR9I	CCNGG	1 cut(s)	28
MunI	CAATTG	1 cut(s)	237
MvnI	CGCG	1 cut(s)	327
MwoI	GCNNNNNNNGC	6 cut(s)	336, 437, 488, 518, 521, 527
NciI	CCSGG	1 cut(s)	28
NdeII	GATC	6 cut(s)	7, 209, 279, 344, 426, 476
NlaIII	CATG	1 cut(s)	165
NlaIV	GGNNCC	3 cut(s)	9, 223, 346
NspV	TTCGAA	1 cut(s)	132
OliI	CACNNNNGTG	1 cut(s)	446
PfeI	GAWTC	2 cut(s)	269, 552
PinAI	ACCGGT	1 cut(s)	188
PkrI	GCNGC	6 cut(s)	256, 329, 367, 463, 514, 523
PleI	GAGTC	1 cut(s)	306
PpsI	GAGTC	1 cut(s)	306
Ppu21I	YACGTR	1 cut(s)	387
PspN4I	GGNNCC	3 cut(s)	9, 223, 346
PspPI	GGNCC	1 cut(s)	470
PstI	CTGCAG	1 cut(s)	526
PstNI	CAGNNNCTG	1 cut(s)	530
PsuI	RGATCY	5 cut(s)	7, 209, 279, 344, 476
RsaI	GTAC	4 cut(s)	50, 59, 89, 235
RsaNI	GTAC	4 cut(s)	49, 58, 88, 234
RseI	CAYNNNNRTG	1 cut(s)	446
SaqAI	TTAA	1 cut(s)	158
SatI	GCNGC	6 cut(s)	255, 328, 366, 462, 513, 522
Sau3AI	GATC	6 cut(s)	7, 209, 279, 344, 426, 476
Sau96I	GGNCC	1 cut(s)	470
SchI	GAGTC	1 cut(s)	306
ScrFI	CCNGG	1 cut(s)	28
SetI	ASST	8 cut(s)	99, 145, 177, 182, 389, 463, 475, 499
SfaNI	GCATC	3 cut(s)	40, 237, 549
SfcI	CTRYAG	1 cut(s)	522
SfuI	TTCGAA	1 cut(s)	132
SinI	GGWCC	1 cut(s)	470
SmiMI	CAYNNNNRTG	1 cut(s)	446
SnaBI	TACGTA	1 cut(s)	387
Sse9I	AATT	2 cut(s)	237, 334
SsiI	CCGC	8 cut(s)	5, 242, 255, 327, 330, 378, 480, 512
SspMI	CTAG	1 cut(s)	474
StyD4I	CCNGG	1 cut(s)	26
TaaI	ACNGT	4 cut(s)	53, 92, 410, 424
TaiI	ACGT	1 cut(s)	389
TaqI	TCGA	1 cut(s)	132
TasI	AATT	2 cut(s)	237, 334
TatI	WGTACW	1 cut(s)	57
TauI	GCSGC	3 cut(s)	257, 330, 515
TfiI	GAWTC	2 cut(s)	269, 552
Tru1I	TTAA	1 cut(s)	158
Tru9I	TTAA	1 cut(s)	158
TscAI	CASTG	2 cut(s)	211, 448
TseI	GCWGC	3 cut(s)	365, 461, 521
TspDTI	ATGAA	1 cut(s)	29
TspGWI	ACGGA	3 cut(s)	75, 337, 414
TspRI	CASTG	2 cut(s)	211, 448
VpaK11BI	GGWCC	1 cut(s)	470
XspI	CTAG	1 cut(s)	474

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.