Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0009875

Physical Location & Seq

Genomic Coordinates Forward (+)

1841551 .. 1842218

Gene Structure 668 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g03320.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGGCCGATTCAACCCAACCCGACGATCACACCGCCGCCGTGAAACCCTACAACCCCTACCAAGACCTCGACGCTCCGATCAAGAAGCTCTACCACCTCCCAACTTCGCCGGAGAATCTCTTTCCCGACGTAGCTTCAAGACCCTACCGTTCATGGGGAAACAACCTCCAGCACTGCACCGGCATTTGCTTCCTCTCCGGCGGCACCGTCGGCCTCGTCCACGGCGCCGTTAAGGGACTCAAGGCCGCCGGCGCCGGCGAGTCTCGGAAGGTCATGATGAGCAGGGCTTTGAGCTCCGGGCTGGAGCTGGGTGGGAGGTACTCAGGGACTATGGGGATTTTGGGGTTTTACTTCTCTGTGATTGAGAGTGGGATTGACTCTTACAGGGGTAAAGAGGGGATTTTGAACACTGGTGCTGCTGGATTTGGGGCTGGGGCGATGTACAAGGCGGCGCGTGGGCCAAGGGCGATGGCGGTTGCGGGGGTGATTGGTGGCGCTGCGGCTGTGGCGGCGGTTTCGGGGAAAACGGCGGTGAAGAAGTATGTTGGGGAGGTTGGTGTTTGGGGGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005744 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0017038 GO:0019866 GO:0030150 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031304 GO:0031305 GO:0031966 GO:0031967 GO:0031975 GO:0032592 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0098573 GO:0098796 GO:0098798 GO:0098800 GO:1990542

KEGG Pathways

Metabolic & Signaling

ko04212 map04212

Pfam Domains

Protein Families

Tim17

Protein Analysis

191

Amino Acids

19.62

Weight (kDa)

9.34

Isoelectric Point (pI)

25.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tim17	PF02466	59 - 168	2.2e-20	Tim17/Tim22/Tim23/Pmp24 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009875)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04800
fragaria_vesca	FvH4_6g03320
rosa_chinensis	RchiOBHm_Chr3g0451811
rosa_laevigata	RLG00000025647 RLG00000033674
rosa_multiflora	Rmu_sc0001152.1_g000039 Rmu_sc0002314.1_g000001 Rmu_sc0006510.1_g000015 Rmu_sc0012070.1_g000001
rosa_roxburghii	Rroxscaffold_164G00436300 Rroxscaffold_6G00428990
rosa_rugosa	Rorug02G0636500
rosa_samantha	Rh3AG038000 Rh3BG039100 Rh3BG039200 Rh3CG037600 Rh3CG037700 Rh3DG038400 Rh3DG038500 Rh5DG439200
rosa_wichuraiana	Rw3G002830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	203, 224, 251
AccII	CGCG	1 cut(s)	454
AcoI	YGGCCR	1 cut(s)	3
AcyI	GRCGYC	2 cut(s)	225, 252
AfaI	GTAC	2 cut(s)	320, 443
AfiI	CCNNNNNNNGG	1 cut(s)	154
AgsI	TTSAA	3 cut(s)	12, 138, 406
AluBI	AGCT	4 cut(s)	88, 134, 294, 307
AluI	AGCT	4 cut(s)	88, 134, 294, 307
Alw21I	GWGCWC	1 cut(s)	296
Alw26I	GTCTC	1 cut(s)	267
AoxI	GGCC	4 cut(s)	3, 211, 243, 458
ApeKI	GCWGC	2 cut(s)	416, 497
AspLEI	GCGC	4 cut(s)	227, 254, 454, 497
AspS9I	GGNCC	1 cut(s)	458
AsuC2I	CCSGG	1 cut(s)	298
AsuHPI	GGTGA	2 cut(s)	496, 544
BanI	GGYRCC	3 cut(s)	203, 224, 251
BanII	GRGCYC	1 cut(s)	296
Bbv12I	GWGCWC	1 cut(s)	296
BbvI	GCAGC	2 cut(s)	403, 484
BccI	CCATC	1 cut(s)	463
BceAI	ACGGC	4 cut(s)	23, 212, 238, 543
BcnI	CCSGG	1 cut(s)	298
BcoDI	GTCTC	1 cut(s)	267
BfoI	RGCGCY	3 cut(s)	228, 255, 498
BisI	GCNGC	8 cut(s)	36, 202, 246, 417, 450, 498, 501, 510
BlsI	GCNGC	8 cut(s)	37, 203, 247, 418, 451, 499, 502, 511
Bme1390I	CCNGG	1 cut(s)	298
BmgT120I	GGNCC	1 cut(s)	458
BmiI	GGNNCC	3 cut(s)	205, 226, 253
BmrFI	CCNGG	1 cut(s)	298
BpmI	CTGGAG	2 cut(s)	152, 323
BpuEI	CTTGAG	1 cut(s)	224
BpuMI	CCSGG	1 cut(s)	298
BsaHI	GRCGYC	2 cut(s)	225, 252
BsaJI	CCNNGG	2 cut(s)	220, 461
Bsc4I	CCNNNNNNNGG	1 cut(s)	154
Bse118I	RCCGGY	3 cut(s)	179, 248, 254
Bse1I	ACTGG	1 cut(s)	415
BseDI	CCNNGG	2 cut(s)	220, 461
BseLI	CCNNNNNNNGG	1 cut(s)	154
BseMII	CTCAG	1 cut(s)	336
BseNI	ACTGG	1 cut(s)	415
BseXI	GCAGC	2 cut(s)	403, 484
BseYI	CCCAGC	2 cut(s)	307, 431
BsgI	GTGCAG	1 cut(s)	160
Bsh1236I	CGCG	1 cut(s)	454
BshFI	GGCC	4 cut(s)	5, 213, 245, 460
BshNI	GGYRCC	3 cut(s)	203, 224, 251
BsiHKAI	GWGCWC	1 cut(s)	296
BsiSI	CCGG	6 cut(s)	110, 180, 198, 249, 255, 297
BslFI	GGGAC	2 cut(s)	249, 340
BslI	CCNNNNNNNGG	1 cut(s)	154
BsmAI	GTCTC	1 cut(s)	267
BsmFI	GGGAC	2 cut(s)	249, 340
BsnI	GGCC	4 cut(s)	5, 213, 245, 460
Bsp1286I	GDGCHC	1 cut(s)	296
Bsp1407I	TGTACA	1 cut(s)	441
Bsp143I	GATC	2 cut(s)	25, 78
BspANI	GGCC	4 cut(s)	5, 213, 245, 460
BspCNI	CTCAG	1 cut(s)	335
BspFNI	CGCG	1 cut(s)	454
BspHI	TCATGA	1 cut(s)	273
BspLI	GGNNCC	3 cut(s)	205, 226, 253
BspT107I	GGYRCC	3 cut(s)	203, 224, 251
BsrFI	RCCGGY	3 cut(s)	179, 248, 254
BsrGI	TGTACA	1 cut(s)	441
BsrI	ACTGG	1 cut(s)	415
BssAI	RCCGGY	3 cut(s)	179, 248, 254
BssECI	CCNNGG	2 cut(s)	220, 461
BssMI	GATC	2 cut(s)	25, 78
BssNI	GRCGYC	2 cut(s)	225, 252
BssT1I	CCWWGG	1 cut(s)	461
Bst4CI	ACNGT	2 cut(s)	149, 208
BstACI	GRCGYC	2 cut(s)	225, 252
BstAUI	TGTACA	1 cut(s)	441
BstC8I	GCNNGC	2 cut(s)	250, 256
BstDEI	CTNAG	1 cut(s)	322
BstDSI	CCRYGG	1 cut(s)	220
BstFNI	CGCG	1 cut(s)	454
BstH2I	RGCGCY	3 cut(s)	228, 255, 498
BstHHI	GCGC	4 cut(s)	227, 254, 454, 497
BstKTI	GATC	2 cut(s)	28, 81
BstMAI	GTCTC	1 cut(s)	267
BstMBI	GATC	2 cut(s)	25, 78
BstMWI	GCNNNNNNNGC	4 cut(s)	210, 251, 506, 509
BstSCI	CCNGG	1 cut(s)	296
BstUI	CGCG	1 cut(s)	454
BstV1I	GCAGC	2 cut(s)	403, 484
BsuRI	GGCC	4 cut(s)	5, 213, 245, 460
BtgI	CCRYGG	1 cut(s)	220
BtgZI	GCGATG	2 cut(s)	452, 482
BtsI	GCAGTG	1 cut(s)	172
BtsIMutI	CAGTG	2 cut(s)	172, 408
Cac8I	GCNNGC	2 cut(s)	250, 256
CciI	TCATGA	1 cut(s)	273
CfoI	GCGC	4 cut(s)	227, 254, 454, 497
Cfr10I	RCCGGY	3 cut(s)	179, 248, 254
Cfr13I	GGNCC	1 cut(s)	458
CseI	GACGC	1 cut(s)	80
Csp6I	GTAC	2 cut(s)	319, 442
CviAII	CATG	2 cut(s)	153, 274
CviQI	GTAC	2 cut(s)	319, 442
DdeI	CTNAG	1 cut(s)	322
DinI	GGCGCC	2 cut(s)	226, 253
DpnI	GATC	2 cut(s)	27, 80
DpnII	GATC	2 cut(s)	25, 78
EaeI	YGGCCR	1 cut(s)	3
Ecl136II	GAGCTC	1 cut(s)	294
Eco130I	CCWWGG	1 cut(s)	461
Eco24I	GRGCYC	1 cut(s)	296
Eco53kI	GAGCTC	1 cut(s)	294
EcoICRI	GAGCTC	1 cut(s)	294
EcoT14I	CCWWGG	1 cut(s)	461
EcoT38I	GRGCYC	1 cut(s)	296
EgeI	GGCGCC	2 cut(s)	226, 253
EheI	GGCGCC	2 cut(s)	226, 253
ErhI	CCWWGG	1 cut(s)	461
FaeI	CATG	2 cut(s)	156, 277
FaiI	YATR	4 cut(s)	154, 275, 332, 543
FaqI	GGGAC	2 cut(s)	249, 340
FatI	CATG	2 cut(s)	152, 273
FauI	CCCGC	1 cut(s)	472
Fnu4HI	GCNGC	8 cut(s)	36, 202, 246, 417, 450, 498, 501, 510
FriOI	GRGCYC	1 cut(s)	296
Fsp4HI	GCNGC	8 cut(s)	36, 202, 246, 417, 450, 498, 501, 510
GlaI	GCGC	4 cut(s)	226, 253, 453, 496
GluI	GCNGC	8 cut(s)	36, 202, 246, 417, 450, 498, 501, 510
GsaI	CCCAGC	2 cut(s)	311, 435
GsuI	CTGGAG	2 cut(s)	152, 323
HaeII	RGCGCY	3 cut(s)	228, 255, 498
HaeIII	GGCC	4 cut(s)	5, 213, 245, 460
HapII	CCGG	6 cut(s)	110, 180, 198, 249, 255, 297
HgaI	GACGC	1 cut(s)	80
HhaI	GCGC	4 cut(s)	227, 254, 454, 497
Hin1I	GRCGYC	2 cut(s)	225, 252
Hin1II	CATG	2 cut(s)	156, 277
Hin6I	GCGC	4 cut(s)	225, 252, 452, 495
HinP1I	GCGC	4 cut(s)	225, 252, 452, 495
HinfI	GANTC	5 cut(s)	8, 115, 237, 260, 377
HpaII	CCGG	6 cut(s)	110, 180, 198, 249, 255, 297
HphI	GGTGA	2 cut(s)	496, 544
Hpy166II	GTNNAC	1 cut(s)	220
Hpy188I	TCNGA	2 cut(s)	78, 267
Hpy188III	TCNNGA	4 cut(s)	82, 125, 138, 274
Hpy8I	GTNNAC	1 cut(s)	220
Hpy99I	CGWCG	4 cut(s)	26, 74, 131, 212
HpyAV	CCTTC	1 cut(s)	262
HpyCH4III	ACNGT	2 cut(s)	149, 208
HpyCH4IV	ACGT	1 cut(s)	129
HpyCH4V	TGCA	1 cut(s)	177
HpyF10VI	GCNNNNNNNGC	4 cut(s)	210, 251, 506, 509
HpyF3I	CTNAG	1 cut(s)	322
HpySE526I	ACGT	1 cut(s)	129
Hsp92I	GRCGYC	2 cut(s)	225, 252
Hsp92II	CATG	2 cut(s)	156, 277
HspAI	GCGC	4 cut(s)	225, 252, 452, 495
KasI	GGCGCC	2 cut(s)	224, 251
KroI	GCCGGC	2 cut(s)	248, 254
KroNI	GCCGGC	2 cut(s)	250, 256
Kzo9I	GATC	2 cut(s)	25, 78
LmnI	GCTCC	3 cut(s)	79, 299, 304
Lsp1109I	GCAGC	2 cut(s)	403, 484
MaeII	ACGT	1 cut(s)	129
MalI	GATC	2 cut(s)	27, 80
MboI	GATC	2 cut(s)	25, 78
MboII	GAAGA	1 cut(s)	547
MhlI	GDGCHC	1 cut(s)	296
Mly113I	GGCGCC	2 cut(s)	225, 252
MlyI	GAGTC	3 cut(s)	231, 269, 371
MnlI	CCTC	8 cut(s)	77, 107, 176, 203, 224, 309, 388, 544
MreI	CGCCGGCG	2 cut(s)	248, 254
MroNI	GCCGGC	2 cut(s)	248, 254
MseI	TTAA	1 cut(s)	231
MspI	CCGG	6 cut(s)	110, 180, 198, 249, 255, 297
MspR9I	CCNGG	1 cut(s)	298
MvnI	CGCG	1 cut(s)	454
MwoI	GCNNNNNNNGC	4 cut(s)	210, 251, 506, 509
NaeI	GCCGGC	2 cut(s)	250, 256
NarI	GGCGCC	2 cut(s)	225, 252
NciI	CCSGG	1 cut(s)	298
NdeII	GATC	2 cut(s)	25, 78
NgoMIV	GCCGGC	2 cut(s)	248, 254
NlaIII	CATG	2 cut(s)	156, 277
NlaIV	GGNNCC	3 cut(s)	205, 226, 253
PagI	TCATGA	1 cut(s)	273
PdiI	GCCGGC	2 cut(s)	250, 256
PfeI	GAWTC	2 cut(s)	8, 115
PkrI	GCNGC	8 cut(s)	37, 203, 247, 418, 451, 499, 502, 511
PleI	GAGTC	3 cut(s)	231, 268, 371
PluTI	GGCGCC	2 cut(s)	228, 255
PpsI	GAGTC	3 cut(s)	231, 268, 371
Psp124BI	GAGCTC	1 cut(s)	296
PspFI	CCCAGC	2 cut(s)	307, 431
PspN4I	GGNNCC	3 cut(s)	205, 226, 253
PspPI	GGNCC	1 cut(s)	458
RsaI	GTAC	2 cut(s)	320, 443
RsaNI	GTAC	2 cut(s)	319, 442
SacI	GAGCTC	1 cut(s)	296
SaqAI	TTAA	1 cut(s)	231
SatI	GCNGC	8 cut(s)	36, 202, 246, 417, 450, 498, 501, 510
Sau3AI	GATC	2 cut(s)	25, 78
Sau96I	GGNCC	1 cut(s)	458
SchI	GAGTC	3 cut(s)	231, 269, 371
ScrFI	CCNGG	1 cut(s)	298
SduI	GDGCHC	1 cut(s)	296
SfoI	GGCGCC	2 cut(s)	226, 253
SgrAI	CRCCGGYG	2 cut(s)	248, 254
SmlI	CTYRAG	1 cut(s)	239
SmoI	CTYRAG	1 cut(s)	239
SspDI	GGCGCC	2 cut(s)	224, 251
SstI	GAGCTC	1 cut(s)	296
StyD4I	CCNGG	1 cut(s)	296
StyI	CCWWGG	1 cut(s)	461
TaaI	ACNGT	2 cut(s)	149, 208
TaiI	ACGT	1 cut(s)	132
TaqI	TCGA	1 cut(s)	69
TatI	WGTACW	1 cut(s)	441
TauI	GCSGC	6 cut(s)	38, 204, 248, 452, 503, 512
TfiI	GAWTC	2 cut(s)	8, 115
Tru1I	TTAA	1 cut(s)	231
Tru9I	TTAA	1 cut(s)	231
TscAI	CASTG	2 cut(s)	179, 415
TseI	GCWGC	2 cut(s)	416, 497
TspDTI	ATGAA	1 cut(s)	141
TspRI	CASTG	2 cut(s)	179, 415

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.