Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0009875

Physical Location & Seq

Genomic Coordinates Forward (+)

2552704 .. 2553000

Gene Structure 297 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG037700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGAGCGGGGCTTTGAGCTCCGGGGGCGAGTTGGGTCGGAGGTACTCGAACGCTATGGGGATTGTTGGGTTTTATTTCTCTGTGATTGAGGGTTGGATTAACTGTTACAGGGGTAAAGATGGGATCTTGAACACTGGTGTTGCTGGATTTGGGGCTGGGGTGGTGTACAAGGCGGCGCGTGGGCCGAGGGCGGCCGCAGTTGCGGGGGTGATCGGTGGTGCTTCGGCTGTGGCGGCGGTTTCAGGGAAAATGGCGGTAAAGAAGTATGTGGGAGAATTGGGTATTTGGGGGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005744 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0017038 GO:0019866 GO:0030150 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031304 GO:0031305 GO:0031966 GO:0031967 GO:0031975 GO:0032592 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0098573 GO:0098796 GO:0098798 GO:0098800 GO:1990542

KEGG Pathways

Metabolic & Signaling

ko04212 map04212

Pfam Domains

Protein Families

Tim17

Protein Analysis

98

Amino Acids

9.85

Weight (kDa)

9.84

Isoelectric Point (pI)

20.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tim17	PF02466	2 - 75	8.1e-13	Tim17/Tim22/Tim23/Pmp24 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009875)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04800
fragaria_vesca	FvH4_6g03320
rosa_chinensis	RchiOBHm_Chr3g0451811
rosa_laevigata	RLG00000025647 RLG00000033674
rosa_multiflora	Rmu_sc0001152.1_g000039 Rmu_sc0002314.1_g000001 Rmu_sc0006510.1_g000015 Rmu_sc0012070.1_g000001
rosa_roxburghii	Rroxscaffold_164G00436300 Rroxscaffold_6G00428990
rosa_rugosa	Rorug02G0636500
rosa_samantha	Rh3AG038000 Rh3BG039100 Rh3BG039200 Rh3CG037600 Rh3CG037700 Rh3DG038400 Rh3DG038500 Rh5DG439200
rosa_wichuraiana	Rw3G002830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	6
AccII	CGCG	1 cut(s)	178
AciI	CCGC	8 cut(s)	6, 173, 191, 195, 203, 233, 236, 254
AclWI	GGATC	1 cut(s)	131
AcoI	YGGCCR	1 cut(s)	192
AfaI	GTAC	2 cut(s)	44, 167
AgsI	TTSAA	1 cut(s)	130
AluBI	AGCT	1 cut(s)	18
AluI	AGCT	1 cut(s)	18
Alw21I	GWGCWC	1 cut(s)	20
AlwI	GGATC	1 cut(s)	131
AoxI	GGCC	2 cut(s)	182, 192
AspLEI	GCGC	1 cut(s)	178
AspS9I	GGNCC	1 cut(s)	182
AsuC2I	CCSGG	1 cut(s)	22
AsuHPI	GGTGA	1 cut(s)	220
BanII	GRGCYC	1 cut(s)	20
Bbv12I	GWGCWC	1 cut(s)	20
BccI	CCATC	1 cut(s)	113
BcnI	CCSGG	1 cut(s)	22
BisI	GCNGC	4 cut(s)	174, 192, 195, 234
BlsI	GCNGC	4 cut(s)	175, 193, 196, 235
Bme1390I	CCNGG	1 cut(s)	22
BmgT120I	GGNCC	1 cut(s)	182
BmrFI	CCNGG	1 cut(s)	22
BpuMI	CCSGG	1 cut(s)	22
BsaJI	CCNNGG	2 cut(s)	21, 185
Bse1I	ACTGG	1 cut(s)	139
BseDI	CCNNGG	2 cut(s)	21, 185
BseNI	ACTGG	1 cut(s)	139
BseX3I	CGGCCG	1 cut(s)	192
BseYI	CCCAGC	1 cut(s)	155
Bsh1236I	CGCG	1 cut(s)	178
Bsh1285I	CGRYCG	1 cut(s)	195
BshFI	GGCC	2 cut(s)	184, 194
BsiEI	CGRYCG	1 cut(s)	195
BsiHKAI	GWGCWC	1 cut(s)	20
BsiSI	CCGG	1 cut(s)	21
BsnI	GGCC	2 cut(s)	184, 194
Bsp1286I	GDGCHC	1 cut(s)	20
Bsp1407I	TGTACA	1 cut(s)	165
Bsp143I	GATC	2 cut(s)	123, 210
BspACI	CCGC	8 cut(s)	6, 173, 191, 195, 203, 233, 236, 254
BspANI	GGCC	2 cut(s)	184, 194
BspFNI	CGCG	1 cut(s)	178
BspPI	GGATC	1 cut(s)	131
BsrBI	CCGCTC	1 cut(s)	6
BsrGI	TGTACA	1 cut(s)	165
BsrI	ACTGG	1 cut(s)	139
BssECI	CCNNGG	2 cut(s)	21, 185
BssMI	GATC	2 cut(s)	123, 210
Bst4CI	ACNGT	1 cut(s)	104
BstAUI	TGTACA	1 cut(s)	165
BstFNI	CGCG	1 cut(s)	178
BstHHI	GCGC	1 cut(s)	178
BstKTI	GATC	2 cut(s)	126, 213
BstMBI	GATC	2 cut(s)	123, 210
BstMCI	CGRYCG	1 cut(s)	195
BstMWI	GCNNNNNNNGC	3 cut(s)	24, 200, 233
BstSCI	CCNGG	1 cut(s)	20
BstUI	CGCG	1 cut(s)	178
BstX2I	RGATCY	1 cut(s)	123
BstYI	RGATCY	1 cut(s)	123
BstZI	CGGCCG	1 cut(s)	192
BsuRI	GGCC	2 cut(s)	184, 194
BtsIMutI	CAGTG	1 cut(s)	132
CciNI	GCGGCCGC	1 cut(s)	192
CfoI	GCGC	1 cut(s)	178
Cfr13I	GGNCC	1 cut(s)	182
Csp6I	GTAC	2 cut(s)	43, 166
CviJI	RGCY	6 cut(s)	11, 18, 155, 184, 194, 227
CviKI_1	RGCY	6 cut(s)	11, 18, 155, 184, 194, 227
CviQI	GTAC	2 cut(s)	43, 166
DpnI	GATC	2 cut(s)	125, 212
DpnII	GATC	2 cut(s)	123, 210
EaeI	YGGCCR	1 cut(s)	192
EagI	CGGCCG	1 cut(s)	192
Ecl136II	GAGCTC	1 cut(s)	18
EclXI	CGGCCG	1 cut(s)	192
Eco24I	GRGCYC	1 cut(s)	20
Eco52I	CGGCCG	1 cut(s)	192
Eco53kI	GAGCTC	1 cut(s)	18
EcoICRI	GAGCTC	1 cut(s)	18
EcoT38I	GRGCYC	1 cut(s)	20
FaiI	YATR	2 cut(s)	56, 267
FauI	CCCGC	1 cut(s)	196
Fnu4HI	GCNGC	4 cut(s)	174, 192, 195, 234
FriOI	GRGCYC	1 cut(s)	20
Fsp4HI	GCNGC	4 cut(s)	174, 192, 195, 234
GlaI	GCGC	1 cut(s)	177
GluI	GCNGC	4 cut(s)	174, 192, 195, 234
GsaI	CCCAGC	1 cut(s)	159
HaeIII	GGCC	2 cut(s)	184, 194
HapII	CCGG	1 cut(s)	21
HhaI	GCGC	1 cut(s)	178
Hin6I	GCGC	1 cut(s)	176
HinP1I	GCGC	1 cut(s)	176
HpaII	CCGG	1 cut(s)	21
HphI	GGTGA	1 cut(s)	220
Hpy166II	GTNNAC	1 cut(s)	166
Hpy188I	TCNGA	1 cut(s)	39
Hpy188III	TCNNGA	1 cut(s)	127
Hpy8I	GTNNAC	1 cut(s)	166
HpyCH4III	ACNGT	1 cut(s)	104
HpyF10VI	GCNNNNNNNGC	3 cut(s)	24, 200, 233
HspAI	GCGC	1 cut(s)	176
Kzo9I	GATC	2 cut(s)	123, 210
LmnI	GCTCC	1 cut(s)	23
LpnPI	CCDG	6 cut(s)	34, 94, 120, 129, 141, 228
MaeIII	GTNAC	1 cut(s)	104
MalI	GATC	2 cut(s)	125, 212
MbiI	CCGCTC	1 cut(s)	6
MboI	GATC	2 cut(s)	123, 210
MflI	RGATCY	1 cut(s)	123
MhlI	GDGCHC	1 cut(s)	20
MluCI	AATT	1 cut(s)	275
MmeI	TCCRAC	2 cut(s)	17, 74
MnlI	CCTC	3 cut(s)	33, 82, 180
MseI	TTAA	1 cut(s)	99
MspI	CCGG	1 cut(s)	21
MspR9I	CCNGG	1 cut(s)	22
MvnI	CGCG	1 cut(s)	178
MwoI	GCNNNNNNNGC	3 cut(s)	24, 200, 233
NciI	CCSGG	1 cut(s)	22
NdeII	GATC	2 cut(s)	123, 210
NmeAIII	GCCGAG	1 cut(s)	210
NotI	GCGGCCGC	1 cut(s)	192
PkrI	GCNGC	4 cut(s)	175, 193, 196, 235
Psp124BI	GAGCTC	1 cut(s)	20
PspFI	CCCAGC	1 cut(s)	155
PspPI	GGNCC	1 cut(s)	182
PsuI	RGATCY	1 cut(s)	123
RsaI	GTAC	2 cut(s)	44, 167
RsaNI	GTAC	2 cut(s)	43, 166
SacI	GAGCTC	1 cut(s)	20
SaqAI	TTAA	1 cut(s)	99
SatI	GCNGC	4 cut(s)	174, 192, 195, 234
Sau3AI	GATC	2 cut(s)	123, 210
Sau96I	GGNCC	1 cut(s)	182
ScrFI	CCNGG	1 cut(s)	22
SduI	GDGCHC	1 cut(s)	20
SetI	ASST	2 cut(s)	20, 44
Sse9I	AATT	1 cut(s)	275
SsiI	CCGC	8 cut(s)	6, 173, 191, 195, 203, 233, 236, 254
SstI	GAGCTC	1 cut(s)	20
StyD4I	CCNGG	1 cut(s)	20
TaaI	ACNGT	1 cut(s)	104
TaqI	TCGA	1 cut(s)	47
TasI	AATT	1 cut(s)	275
TatI	WGTACW	1 cut(s)	165
TauI	GCSGC	4 cut(s)	176, 194, 197, 236
Tru1I	TTAA	1 cut(s)	99
Tru9I	TTAA	1 cut(s)	99
TscAI	CASTG	1 cut(s)	139
TspRI	CASTG	1 cut(s)	139

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.