Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001152.1

Orthogroup ID

OG0009875

Physical Location & Seq

Genomic Coordinates Forward (+)

151036 .. 151416

Gene Structure 381 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001152.1_g000039.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

atgaactgcaccgacatttgctacttctccagcgagaccgtcggactcgtccacaacactattcagggactcaaggccgccagtgtctgcaagcctcggaaggtcataatgaacagggctttgagttctggaggcgaggtgggttggaagtactcaaacactatgggggttgttgggttgtatttctctgtgattgagagcgggattgactgttacaggggtaaagatgggatcttgaacactggttttgctggatttggggtactcgagcggcatcgactccccgtaccttccatgtccatcagcaacgaccagtctcagattcaatctctctgcgccgatatggactgcctctggcgctctatagacaccaactcctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005744 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0017038 GO:0019866 GO:0030150 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031304 GO:0031305 GO:0031966 GO:0031967 GO:0031975 GO:0032592 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0098573 GO:0098796 GO:0098798 GO:0098800 GO:1990542

KEGG Pathways

Metabolic & Signaling

ko04212 map04212

Pfam Domains

Protein Families

Tim17

Protein Analysis

126

Amino Acids

13.72

Weight (kDa)

6.69

Isoelectric Point (pI)

38.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009875)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04800
fragaria_vesca	FvH4_6g03320
rosa_chinensis	RchiOBHm_Chr3g0451811
rosa_laevigata	RLG00000025647 RLG00000033674
rosa_multiflora	Rmu_sc0001152.1_g000039 Rmu_sc0002314.1_g000001 Rmu_sc0006510.1_g000015 Rmu_sc0012070.1_g000001
rosa_roxburghii	Rroxscaffold_164G00436300 Rroxscaffold_6G00428990
rosa_rugosa	Rorug02G0636500
rosa_samantha	Rh3AG038000 Rh3BG039100 Rh3BG039200 Rh3CG037600 Rh3CG037700 Rh3DG038400 Rh3DG038500 Rh5DG439200
rosa_wichuraiana	Rw3G002830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	201, 271
AciI	CCGC	3 cut(s)	78, 201, 271
AclWI	GGATC	1 cut(s)	239
AfaI	GTAC	3 cut(s)	152, 264, 288
AgsI	TTSAA	2 cut(s)	238, 326
Alw26I	GTCTC	2 cut(s)	29, 321
AlwI	GGATC	1 cut(s)	239
AlwNI	CAGNNNCTG	1 cut(s)	87
Ama87I	CYCGRG	1 cut(s)	266
AoxI	GGCC	1 cut(s)	75
AspLEI	GCGC	2 cut(s)	338, 360
AvaI	CYCGRG	1 cut(s)	266
BccI	CCATC	2 cut(s)	221, 308
BcoDI	GTCTC	2 cut(s)	29, 321
BfmI	CTRYAG	1 cut(s)	363
BfoI	RGCGCY	1 cut(s)	361
BisI	GCNGC	2 cut(s)	78, 272
BlsI	GCNGC	2 cut(s)	79, 273
BmcAI	AGTACT	1 cut(s)	152
BmeT110I	CYCGRG	1 cut(s)	266
BmsI	GCATC	1 cut(s)	283
BpmI	CTGGAG	2 cut(s)	13, 150
BpuEI	CTTGAG	1 cut(s)	56
BsaI	GGTCTC	1 cut(s)	29
BsaJI	CCNNGG	1 cut(s)	95
BsaXI	ACNNNNNCTCC	3 cut(s)	123, 153, 359
Bse1I	ACTGG	3 cut(s)	81, 247, 313
BseDI	CCNNGG	1 cut(s)	95
BseMII	CTCAG	1 cut(s)	332
BseNI	ACTGG	3 cut(s)	81, 247, 313
BshFI	GGCC	1 cut(s)	77
BsiHKCI	CYCGRG	1 cut(s)	266
BslFI	GGGAC	1 cut(s)	81
BsmAI	GTCTC	2 cut(s)	29, 321
BsmFI	GGGAC	1 cut(s)	81
BsnI	GGCC	1 cut(s)	77
Bso31I	GGTCTC	1 cut(s)	29
BsoBI	CYCGRG	1 cut(s)	266
Bsp143I	GATC	1 cut(s)	231
BspACI	CCGC	3 cut(s)	78, 201, 271
BspANI	GGCC	1 cut(s)	77
BspCNI	CTCAG	1 cut(s)	331
BspPI	GGATC	1 cut(s)	239
BspTNI	GGTCTC	1 cut(s)	29
BsrBI	CCGCTC	2 cut(s)	201, 271
BsrI	ACTGG	3 cut(s)	81, 247, 313
BssECI	CCNNGG	1 cut(s)	95
BssMI	GATC	1 cut(s)	231
Bst4CI	ACNGT	2 cut(s)	40, 212
BstC8I	GCNNGC	1 cut(s)	92
BstDEI	CTNAG	1 cut(s)	318
BstH2I	RGCGCY	1 cut(s)	361
BstHHI	GCGC	2 cut(s)	338, 360
BstKTI	GATC	1 cut(s)	234
BstMAI	GTCTC	2 cut(s)	29, 321
BstMBI	GATC	1 cut(s)	231
BstMWI	GCNNNNNNNGC	1 cut(s)	357
BstSFI	CTRYAG	1 cut(s)	363
BstX2I	RGATCY	1 cut(s)	231
BstYI	RGATCY	1 cut(s)	231
BsuRI	GGCC	1 cut(s)	77
BtsIMutI	CAGTG	2 cut(s)	88, 240
Cac8I	GCNNGC	1 cut(s)	92
CaiI	CAGNNNCTG	1 cut(s)	87
CfoI	GCGC	2 cut(s)	338, 360
Csp6I	GTAC	3 cut(s)	151, 263, 287
CviAII	CATG	1 cut(s)	295
CviJI	RGCY	3 cut(s)	77, 94, 119
CviKI_1	RGCY	3 cut(s)	77, 94, 119
CviQI	GTAC	3 cut(s)	151, 263, 287
DdeI	CTNAG	1 cut(s)	318
DpnI	GATC	1 cut(s)	233
DpnII	GATC	1 cut(s)	231
Eco31I	GGTCTC	1 cut(s)	29
Eco88I	CYCGRG	1 cut(s)	266
FaeI	CATG	1 cut(s)	298
FaiI	YATR	5 cut(s)	107, 164, 296, 344, 365
FaqI	GGGAC	1 cut(s)	81
FatI	CATG	1 cut(s)	294
FauI	CCCGC	1 cut(s)	194
Fnu4HI	GCNGC	2 cut(s)	78, 272
Fsp4HI	GCNGC	2 cut(s)	78, 272
GlaI	GCGC	2 cut(s)	337, 359
GluI	GCNGC	2 cut(s)	78, 272
GsuI	CTGGAG	2 cut(s)	13, 150
HaeII	RGCGCY	1 cut(s)	361
HaeIII	GGCC	1 cut(s)	77
HhaI	GCGC	2 cut(s)	338, 360
Hin1II	CATG	1 cut(s)	298
Hin6I	GCGC	2 cut(s)	336, 358
HinP1I	GCGC	2 cut(s)	336, 358
HinfI	GANTC	4 cut(s)	45, 69, 279, 322
Hpy166II	GTNNAC	1 cut(s)	52
Hpy188I	TCNGA	3 cut(s)	44, 99, 321
Hpy188III	TCNNGA	2 cut(s)	129, 235
Hpy8I	GTNNAC	1 cut(s)	52
Hpy99I	CGWCG	1 cut(s)	44
HpyAV	CCTTC	2 cut(s)	94, 300
HpyCH4III	ACNGT	2 cut(s)	40, 212
HpyCH4V	TGCA	2 cut(s)	9, 90
HpyF10VI	GCNNNNNNNGC	1 cut(s)	357
HpyF3I	CTNAG	1 cut(s)	318
Hsp92II	CATG	1 cut(s)	298
HspAI	GCGC	2 cut(s)	336, 358
Kzo9I	GATC	1 cut(s)	231
LweI	GCATC	1 cut(s)	283
MaeIII	GTNAC	1 cut(s)	212
MalI	GATC	1 cut(s)	233
MbiI	CCGCTC	2 cut(s)	201, 271
MboI	GATC	1 cut(s)	231
MflI	RGATCY	1 cut(s)	231
MlyI	GAGTC	3 cut(s)	39, 63, 273
MmeI	TCCRAC	2 cut(s)	22, 125
MnlI	CCTC	4 cut(s)	105, 125, 130, 362
MwoI	GCNNNNNNNGC	1 cut(s)	357
NdeII	GATC	1 cut(s)	231
NlaIII	CATG	1 cut(s)	298
PaeR7I	CTCGAG	1 cut(s)	266
PfeI	GAWTC	1 cut(s)	322
PkrI	GCNGC	2 cut(s)	79, 273
PleI	GAGTC	3 cut(s)	39, 63, 273
PpsI	GAGTC	3 cut(s)	39, 63, 273
PspXI	VCTCGAGB	1 cut(s)	266
PstNI	CAGNNNCTG	1 cut(s)	87
PsuI	RGATCY	1 cut(s)	231
RsaI	GTAC	3 cut(s)	152, 264, 288
RsaNI	GTAC	3 cut(s)	151, 263, 287
SatI	GCNGC	2 cut(s)	78, 272
Sau3AI	GATC	1 cut(s)	231
ScaI	AGTACT	1 cut(s)	152
SchI	GAGTC	3 cut(s)	39, 63, 273
SetI	ASST	3 cut(s)	105, 141, 292
SfaNI	GCATC	1 cut(s)	283
SfcI	CTRYAG	1 cut(s)	363
Sfr274I	CTCGAG	1 cut(s)	266
SlaI	CTCGAG	1 cut(s)	266
SmlI	CTYRAG	2 cut(s)	71, 266
SmoI	CTYRAG	2 cut(s)	71, 266
SsiI	CCGC	3 cut(s)	78, 201, 271
TaaI	ACNGT	2 cut(s)	40, 212
TaqI	TCGA	2 cut(s)	267, 277
TatI	WGTACW	1 cut(s)	150
TauI	GCSGC	2 cut(s)	80, 274
TfiI	GAWTC	1 cut(s)	322
TscAI	CASTG	2 cut(s)	88, 247
TspDTI	ATGAA	2 cut(s)	17, 125
TspRI	CASTG	2 cut(s)	88, 247
XhoI	CTCGAG	1 cut(s)	266
ZrmI	AGTACT	1 cut(s)	152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.