Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0009875

Physical Location & Seq

Genomic Coordinates Forward (+)

2523113 .. 2523683

Gene Structure 571 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G002830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGCCGATTCAACCCAACCCACCACCGCCGTCGCCGCCGCGAATCCCTACAACCCCTACCAAGACCTCGACGCTCCCATCAAGAAGCTCTACTACCTCCCAACCTCACCGGAGCACCTCTATCCCGAAAAAGCTCCAAAACCCTACCGTCCCTTTGGAGAGAACCTCGTGAGCTGCACCGGCATTTGCTACCTCTCCGGCCGGACCGCCGGACTCGTCCACGGCGGTGTTAGGGTACTCAATGCCGCCGGCGCCGGCGAGCCTCGGAGGGTCAGAATGAGCAGGGCTTTGAGCTCCGGTGGCGAGTTGGGTCGGAGGTACTCGAACGCTATGGGGATTGTTGGGTTGTATTTCTCTGTGATTGAGGGTTGGATTAACTGTTACAGGGGTAAAGATGGGATCTTGAACACTGGCGGCGCGTGGGCCGAGGGCGGCGGCGCTTGCGGGGTGATCGGTGGTGCTGGGGCTGTGGCGGCGGTTTTGGGGAAAATGGCTGTGAAGAAGTATGTGGGAGAATTGGGTATTTGGGGGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005744 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0017038 GO:0019866 GO:0030150 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031304 GO:0031305 GO:0031966 GO:0031967 GO:0031975 GO:0032592 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0098573 GO:0098796 GO:0098798 GO:0098800 GO:1990542

KEGG Pathways

Metabolic & Signaling

ko04212 map04212

Pfam Domains

Protein Families

Tim17

Protein Analysis

178

Amino Acids

18.65

Weight (kDa)

9.19

Isoelectric Point (pI)

35.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tim17	PF02466	57 - 162	1.6e-08	Tim17/Tim22/Tim23/Pmp24 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0009875)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04800
fragaria_vesca	FvH4_6g03320
rosa_chinensis	RchiOBHm_Chr3g0451811
rosa_laevigata	RLG00000025647 RLG00000033674
rosa_multiflora	Rmu_sc0001152.1_g000039 Rmu_sc0002314.1_g000001 Rmu_sc0006510.1_g000015 Rmu_sc0012070.1_g000001
rosa_roxburghii	Rroxscaffold_164G00436300 Rroxscaffold_6G00428990
rosa_rugosa	Rorug02G0636500
rosa_samantha	Rh3AG038000 Rh3BG039100 Rh3BG039200 Rh3CG037600 Rh3CG037700 Rh3DG038400 Rh3DG038500 Rh5DG439200
rosa_wichuraiana	Rw3G002830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	251
AccII	CGCG	2 cut(s)	41, 419
AclWI	GGATC	1 cut(s)	407
AcoI	YGGCCR	2 cut(s)	3, 199
AcyI	GRCGYC	1 cut(s)	252
AfaI	GTAC	2 cut(s)	237, 320
AgsI	TTSAA	2 cut(s)	12, 406
AleI	CACNNNNGTG	1 cut(s)	225
AluBI	AGCT	4 cut(s)	88, 134, 174, 294
AluI	AGCT	4 cut(s)	88, 134, 174, 294
Alw21I	GWGCWC	2 cut(s)	117, 296
AlwI	GGATC	1 cut(s)	407
AoxI	GGCC	3 cut(s)	3, 199, 423
ApeKI	GCWGC	1 cut(s)	174
AspLEI	GCGC	3 cut(s)	254, 419, 440
AspS9I	GGNCC	2 cut(s)	204, 423
AsuHPI	GGTGA	2 cut(s)	99, 460
AvaII	GGWCC	1 cut(s)	204
BanI	GGYRCC	1 cut(s)	251
BanII	GRGCYC	1 cut(s)	296
BarI	GAAGNNNNNNTAC	2 cut(s)	77, 109
BauI	CACGAG	1 cut(s)	167
Bbv12I	GWGCWC	2 cut(s)	117, 296
BbvI	GCAGC	1 cut(s)	161
BccI	CCATC	2 cut(s)	86, 389
BceAI	ACGGC	2 cut(s)	14, 238
BfoI	RGCGCY	2 cut(s)	255, 441
BisI	GCNGC	8 cut(s)	36, 39, 175, 246, 415, 433, 436, 474
BlsI	GCNGC	8 cut(s)	37, 40, 176, 247, 416, 434, 437, 475
Bme18I	GGWCC	1 cut(s)	204
BmgT120I	GGNCC	2 cut(s)	204, 423
BmiI	GGNNCC	1 cut(s)	253
BplI	GAGNNNNNCTC	2 cut(s)	150, 182
BsaHI	GRCGYC	1 cut(s)	252
BsaJI	CCNNGG	3 cut(s)	220, 263, 426
BsaWI	WCCGGW	2 cut(s)	109, 296
Bse118I	RCCGGY	3 cut(s)	179, 248, 254
Bse1I	ACTGG	1 cut(s)	415
BseDI	CCNNGG	3 cut(s)	220, 263, 426
BseNI	ACTGG	1 cut(s)	415
BseX3I	CGGCCG	1 cut(s)	199
BseXI	GCAGC	1 cut(s)	161
BseYI	CCCAGC	1 cut(s)	461
BsgI	GTGCAG	1 cut(s)	160
Bsh1236I	CGCG	2 cut(s)	41, 419
Bsh1285I	CGRYCG	1 cut(s)	202
BshFI	GGCC	3 cut(s)	5, 201, 425
BshNI	GGYRCC	1 cut(s)	251
BsiEI	CGRYCG	1 cut(s)	202
BsiHKAI	GWGCWC	2 cut(s)	117, 296
BsiSI	CCGG	8 cut(s)	110, 180, 198, 202, 210, 249, 255, 297
BslFI	GGGAC	1 cut(s)	135
BsmFI	GGGAC	1 cut(s)	135
BsnI	GGCC	3 cut(s)	5, 201, 425
Bsp1286I	GDGCHC	2 cut(s)	117, 296
Bsp143I	GATC	2 cut(s)	399, 450
BspANI	GGCC	3 cut(s)	5, 201, 425
BspFNI	CGCG	2 cut(s)	41, 419
BspLI	GGNNCC	1 cut(s)	253
BspPI	GGATC	1 cut(s)	407
BspT107I	GGYRCC	1 cut(s)	251
BsrFI	RCCGGY	3 cut(s)	179, 248, 254
BsrI	ACTGG	1 cut(s)	415
BssAI	RCCGGY	3 cut(s)	179, 248, 254
BssECI	CCNNGG	3 cut(s)	220, 263, 426
BssMI	GATC	2 cut(s)	399, 450
BssNI	GRCGYC	1 cut(s)	252
BssSI	CACGAG	1 cut(s)	167
Bst2BI	CACGAG	1 cut(s)	167
Bst4CI	ACNGT	2 cut(s)	149, 380
BstACI	GRCGYC	1 cut(s)	252
BstC8I	GCNNGC	4 cut(s)	250, 256, 260, 442
BstDSI	CCRYGG	1 cut(s)	220
BstFNI	CGCG	2 cut(s)	41, 419
BstH2I	RGCGCY	2 cut(s)	255, 441
BstHHI	GCGC	3 cut(s)	254, 419, 440
BstKTI	GATC	2 cut(s)	402, 453
BstMBI	GATC	2 cut(s)	399, 450
BstMCI	CGRYCG	1 cut(s)	202
BstMWI	GCNNNNNNNGC	6 cut(s)	35, 180, 251, 300, 441, 473
BstUI	CGCG	2 cut(s)	41, 419
BstV1I	GCAGC	1 cut(s)	161
BstX2I	RGATCY	1 cut(s)	399
BstYI	RGATCY	1 cut(s)	399
BstZI	CGGCCG	1 cut(s)	199
BsuRI	GGCC	3 cut(s)	5, 201, 425
BtgI	CCRYGG	1 cut(s)	220
BtsIMutI	CAGTG	1 cut(s)	408
Cac8I	GCNNGC	4 cut(s)	250, 256, 260, 442
CfoI	GCGC	3 cut(s)	254, 419, 440
Cfr10I	RCCGGY	3 cut(s)	179, 248, 254
Cfr13I	GGNCC	2 cut(s)	204, 423
CpoI	CGGWCCG	1 cut(s)	204
CseI	GACGC	1 cut(s)	80
Csp6I	GTAC	2 cut(s)	236, 319
CspI	CGGWCCG	1 cut(s)	204
CviQI	GTAC	2 cut(s)	236, 319
DinI	GGCGCC	1 cut(s)	253
DpnI	GATC	2 cut(s)	401, 452
DpnII	GATC	2 cut(s)	399, 450
EaeI	YGGCCR	2 cut(s)	3, 199
EagI	CGGCCG	1 cut(s)	199
Ecl136II	GAGCTC	1 cut(s)	294
EclXI	CGGCCG	1 cut(s)	199
Eco24I	GRGCYC	1 cut(s)	296
Eco47I	GGWCC	1 cut(s)	204
Eco52I	CGGCCG	1 cut(s)	199
Eco53kI	GAGCTC	1 cut(s)	294
EcoICRI	GAGCTC	1 cut(s)	294
EcoT38I	GRGCYC	1 cut(s)	296
EgeI	GGCGCC	1 cut(s)	253
EheI	GGCGCC	1 cut(s)	253
FaiI	YATR	2 cut(s)	332, 507
FaqI	GGGAC	1 cut(s)	135
FauI	CCCGC	1 cut(s)	437
Fnu4HI	GCNGC	8 cut(s)	36, 39, 175, 246, 415, 433, 436, 474
FriOI	GRGCYC	1 cut(s)	296
Fsp4HI	GCNGC	8 cut(s)	36, 39, 175, 246, 415, 433, 436, 474
GlaI	GCGC	3 cut(s)	253, 418, 439
GluI	GCNGC	8 cut(s)	36, 39, 175, 246, 415, 433, 436, 474
GsaI	CCCAGC	1 cut(s)	465
HaeII	RGCGCY	2 cut(s)	255, 441
HaeIII	GGCC	3 cut(s)	5, 201, 425
HapII	CCGG	8 cut(s)	110, 180, 198, 202, 210, 249, 255, 297
HgaI	GACGC	1 cut(s)	80
HhaI	GCGC	3 cut(s)	254, 419, 440
Hin1I	GRCGYC	1 cut(s)	252
Hin6I	GCGC	3 cut(s)	252, 417, 438
HinP1I	GCGC	3 cut(s)	252, 417, 438
HinfI	GANTC	3 cut(s)	8, 43, 213
HpaII	CCGG	8 cut(s)	110, 180, 198, 202, 210, 249, 255, 297
HphI	GGTGA	2 cut(s)	99, 460
Hpy166II	GTNNAC	1 cut(s)	220
Hpy188I	TCNGA	3 cut(s)	267, 275, 315
Hpy188III	TCNNGA	4 cut(s)	82, 125, 169, 403
Hpy8I	GTNNAC	1 cut(s)	220
Hpy99I	CGWCG	2 cut(s)	35, 74
HpyCH4III	ACNGT	2 cut(s)	149, 380
HpyCH4V	TGCA	1 cut(s)	177
HpyF10VI	GCNNNNNNNGC	6 cut(s)	35, 180, 251, 300, 441, 473
Hsp92I	GRCGYC	1 cut(s)	252
HspAI	GCGC	3 cut(s)	252, 417, 438
KasI	GGCGCC	1 cut(s)	251
KroI	GCCGGC	2 cut(s)	248, 254
KroNI	GCCGGC	2 cut(s)	250, 256
Kzo9I	GATC	2 cut(s)	399, 450
LmnI	GCTCC	4 cut(s)	79, 112, 139, 299
Lsp1109I	GCAGC	1 cut(s)	161
MaeIII	GTNAC	1 cut(s)	380
MalI	GATC	2 cut(s)	401, 452
MboI	GATC	2 cut(s)	399, 450
MboII	GAAGA	1 cut(s)	511
MflI	RGATCY	1 cut(s)	399
MhlI	GDGCHC	2 cut(s)	117, 296
MluCI	AATT	1 cut(s)	515
Mly113I	GGCGCC	1 cut(s)	252
MlyI	GAGTC	1 cut(s)	207
MmeI	TCCRAC	2 cut(s)	293, 350
MreI	CGCCGGCG	2 cut(s)	248, 254
MroNI	GCCGGC	2 cut(s)	248, 254
MseI	TTAA	1 cut(s)	375
MslI	CAYNNNNRTG	1 cut(s)	225
MspI	CCGG	8 cut(s)	110, 180, 198, 202, 210, 249, 255, 297
MvnI	CGCG	2 cut(s)	41, 419
MwoI	GCNNNNNNNGC	6 cut(s)	35, 180, 251, 300, 441, 473
NaeI	GCCGGC	2 cut(s)	250, 256
NarI	GGCGCC	1 cut(s)	252
NdeII	GATC	2 cut(s)	399, 450
NgoMIV	GCCGGC	2 cut(s)	248, 254
NlaIV	GGNNCC	1 cut(s)	253
NmeAIII	GCCGAG	1 cut(s)	451
OliI	CACNNNNGTG	1 cut(s)	225
PdiI	GCCGGC	2 cut(s)	250, 256
PfeI	GAWTC	2 cut(s)	8, 43
PkrI	GCNGC	8 cut(s)	37, 40, 176, 247, 416, 434, 437, 475
PleI	GAGTC	1 cut(s)	207
PluTI	GGCGCC	1 cut(s)	255
PpsI	GAGTC	1 cut(s)	207
Psp124BI	GAGCTC	1 cut(s)	296
PspFI	CCCAGC	1 cut(s)	461
PspN4I	GGNNCC	1 cut(s)	253
PspPI	GGNCC	2 cut(s)	204, 423
PsuI	RGATCY	1 cut(s)	399
RsaI	GTAC	2 cut(s)	237, 320
RsaNI	GTAC	2 cut(s)	236, 319
RseI	CAYNNNNRTG	1 cut(s)	225
Rsr2I	CGGWCCG	1 cut(s)	204
RsrII	CGGWCCG	1 cut(s)	204
SacI	GAGCTC	1 cut(s)	296
SaqAI	TTAA	1 cut(s)	375
SatI	GCNGC	8 cut(s)	36, 39, 175, 246, 415, 433, 436, 474
Sau3AI	GATC	2 cut(s)	399, 450
Sau96I	GGNCC	2 cut(s)	204, 423
SchI	GAGTC	1 cut(s)	207
SduI	GDGCHC	2 cut(s)	117, 296
SfoI	GGCGCC	1 cut(s)	253
SgrAI	CRCCGGYG	2 cut(s)	248, 254
SinI	GGWCC	1 cut(s)	204
SmiMI	CAYNNNNRTG	1 cut(s)	225
Sse9I	AATT	1 cut(s)	515
SspDI	GGCGCC	1 cut(s)	251
SstI	GAGCTC	1 cut(s)	296
TaaI	ACNGT	2 cut(s)	149, 380
TaqI	TCGA	2 cut(s)	69, 323
TasI	AATT	1 cut(s)	515
TauI	GCSGC	7 cut(s)	38, 41, 248, 417, 435, 438, 476
TfiI	GAWTC	2 cut(s)	8, 43
Tru1I	TTAA	1 cut(s)	375
Tru9I	TTAA	1 cut(s)	375
TscAI	CASTG	1 cut(s)	415
TseI	GCWGC	1 cut(s)	174
TspRI	CASTG	1 cut(s)	415
VpaK11BI	GGWCC	1 cut(s)	204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.