Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012070.1

Orthogroup ID

OG0009875

Physical Location & Seq

Genomic Coordinates Reverse (-)

384 .. 960

Gene Structure 577 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012070.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

atggccgattcaacccaacccaccaccgccgtcgccgccgcgaatccctacaacccctaccaagacctcgacactccgatcaagaagctctactacctcacaacctcgccggagcacctctatcccgaaaaagctccaaaaccctaccgtccctttggagacaacctcgtgagttgcaccggcatttgctacctctccggccggaccgccggactcgttcatggcggtgttaggggactgaaggccaccggcgccggcgagcctcggagggtcagaatgagcagggccttgagctccgggggcgagttgggtcggaggggtaaagatgggatcttgaacactggtgttgctggatttggggccggggtggtgtgcaaggcggcgcgtgggccgagggcggcggcgcttgcgggggtgatcggtggtgctgcggctgtggcggcggtttcggggaaaatggctgtgaagaagtatgtgggagaattgggtatttgggggttttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005744 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0017038 GO:0019866 GO:0030150 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031304 GO:0031305 GO:0031966 GO:0031967 GO:0031975 GO:0032592 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0098573 GO:0098796 GO:0098798 GO:0098800 GO:1990542

KEGG Pathways

Metabolic & Signaling

ko04212 map04212

Pfam Domains

Protein Families

Tim17

Protein Analysis

167

Amino Acids

17.15

Weight (kDa)

9.83

Isoelectric Point (pI)

29.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009875)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04800
fragaria_vesca	FvH4_6g03320
rosa_chinensis	RchiOBHm_Chr3g0451811
rosa_laevigata	RLG00000025647 RLG00000033674
rosa_multiflora	Rmu_sc0001152.1_g000039 Rmu_sc0002314.1_g000001 Rmu_sc0006510.1_g000015 Rmu_sc0012070.1_g000001
rosa_roxburghii	Rroxscaffold_164G00436300 Rroxscaffold_6G00428990
rosa_rugosa	Rorug02G0636500
rosa_samantha	Rh3AG038000 Rh3BG039100 Rh3BG039200 Rh3CG037600 Rh3CG037700 Rh3DG038400 Rh3DG038500 Rh5DG439200
rosa_wichuraiana	Rw3G002830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	251
AccII	CGCG	2 cut(s)	41, 385
AclWI	GGATC	1 cut(s)	338
AcoI	YGGCCR	2 cut(s)	3, 199
AcuI	CTGAAG	1 cut(s)	260
AcyI	GRCGYC	1 cut(s)	252
AgsI	TTSAA	2 cut(s)	12, 337
AluBI	AGCT	3 cut(s)	88, 134, 294
AluI	AGCT	3 cut(s)	88, 134, 294
Alw21I	GWGCWC	2 cut(s)	117, 296
Alw26I	GTCTC	1 cut(s)	153
AlwI	GGATC	1 cut(s)	338
AoxI	GGCC	6 cut(s)	3, 199, 243, 285, 360, 389
ApeKI	GCWGC	1 cut(s)	428
AspLEI	GCGC	3 cut(s)	254, 385, 406
AspS9I	GGNCC	4 cut(s)	204, 285, 360, 389
AsuC2I	CCSGG	2 cut(s)	298, 364
AsuHPI	GGTGA	1 cut(s)	427
AvaII	GGWCC	1 cut(s)	204
BanI	GGYRCC	1 cut(s)	251
BanII	GRGCYC	1 cut(s)	296
BarI	GAAGNNNNNNTAC	2 cut(s)	77, 109
BauI	CACGAG	1 cut(s)	167
Bbv12I	GWGCWC	2 cut(s)	117, 296
BbvI	GCAGC	1 cut(s)	415
BccI	CCATC	1 cut(s)	320
BceAI	ACGGC	1 cut(s)	14
BcnI	CCSGG	2 cut(s)	298, 364
BcoDI	GTCTC	1 cut(s)	153
BfoI	RGCGCY	2 cut(s)	255, 407
BisI	GCNGC	8 cut(s)	36, 39, 381, 399, 402, 429, 432, 441
BlsI	GCNGC	8 cut(s)	37, 40, 382, 400, 403, 430, 433, 442
Bme1390I	CCNGG	2 cut(s)	298, 364
Bme18I	GGWCC	1 cut(s)	204
BmgT120I	GGNCC	4 cut(s)	204, 285, 360, 389
BmiI	GGNNCC	2 cut(s)	253, 361
BmrFI	CCNGG	2 cut(s)	298, 364
BplI	GAGNNNNNCTC	2 cut(s)	150, 182
BpuEI	CTTGAG	1 cut(s)	310
BpuMI	CCSGG	2 cut(s)	298, 364
BsaHI	GRCGYC	1 cut(s)	252
BsaJI	CCNNGG	4 cut(s)	263, 297, 363, 392
Bse118I	RCCGGY	3 cut(s)	179, 248, 254
Bse1I	ACTGG	1 cut(s)	346
BseDI	CCNNGG	4 cut(s)	263, 297, 363, 392
BseNI	ACTGG	1 cut(s)	346
BseX3I	CGGCCG	1 cut(s)	199
BseXI	GCAGC	1 cut(s)	415
Bsh1236I	CGCG	2 cut(s)	41, 385
Bsh1285I	CGRYCG	1 cut(s)	202
BshFI	GGCC	6 cut(s)	5, 201, 245, 287, 362, 391
BshNI	GGYRCC	1 cut(s)	251
BsiEI	CGRYCG	1 cut(s)	202
BsiHKAI	GWGCWC	2 cut(s)	117, 296
BsiSI	CCGG	9 cut(s)	110, 180, 198, 202, 210, 249, 255, 297, 363
BslFI	GGGAC	2 cut(s)	135, 249
BsmAI	GTCTC	1 cut(s)	153
BsmFI	GGGAC	2 cut(s)	135, 249
BsnI	GGCC	6 cut(s)	5, 201, 245, 287, 362, 391
Bsp1286I	GDGCHC	2 cut(s)	117, 296
Bsp143I	GATC	3 cut(s)	78, 330, 417
BspANI	GGCC	6 cut(s)	5, 201, 245, 287, 362, 391
BspFNI	CGCG	2 cut(s)	41, 385
BspLI	GGNNCC	2 cut(s)	253, 361
BspPI	GGATC	1 cut(s)	338
BspT107I	GGYRCC	1 cut(s)	251
BsrFI	RCCGGY	3 cut(s)	179, 248, 254
BsrI	ACTGG	1 cut(s)	346
BssAI	RCCGGY	3 cut(s)	179, 248, 254
BssECI	CCNNGG	4 cut(s)	263, 297, 363, 392
BssMI	GATC	3 cut(s)	78, 330, 417
BssNI	GRCGYC	1 cut(s)	252
BssSI	CACGAG	1 cut(s)	167
Bst2BI	CACGAG	1 cut(s)	167
Bst4CI	ACNGT	1 cut(s)	149
BstACI	GRCGYC	1 cut(s)	252
BstC8I	GCNNGC	3 cut(s)	256, 260, 408
BstFNI	CGCG	2 cut(s)	41, 385
BstH2I	RGCGCY	2 cut(s)	255, 407
BstHHI	GCGC	3 cut(s)	254, 385, 406
BstKTI	GATC	3 cut(s)	81, 333, 420
BstMAI	GTCTC	1 cut(s)	153
BstMBI	GATC	3 cut(s)	78, 330, 417
BstMCI	CGRYCG	1 cut(s)	202
BstMWI	GCNNNNNNNGC	6 cut(s)	35, 251, 300, 407, 437, 440
BstSCI	CCNGG	2 cut(s)	296, 362
BstUI	CGCG	2 cut(s)	41, 385
BstV1I	GCAGC	1 cut(s)	415
BstX2I	RGATCY	1 cut(s)	330
BstYI	RGATCY	1 cut(s)	330
BstZI	CGGCCG	1 cut(s)	199
BsuRI	GGCC	6 cut(s)	5, 201, 245, 287, 362, 391
BtsIMutI	CAGTG	1 cut(s)	339
Cac8I	GCNNGC	3 cut(s)	256, 260, 408
CfoI	GCGC	3 cut(s)	254, 385, 406
Cfr10I	RCCGGY	3 cut(s)	179, 248, 254
Cfr13I	GGNCC	4 cut(s)	204, 285, 360, 389
CpoI	CGGWCCG	1 cut(s)	204
CspI	CGGWCCG	1 cut(s)	204
CviAII	CATG	1 cut(s)	221
DinI	GGCGCC	1 cut(s)	253
DpnI	GATC	3 cut(s)	80, 332, 419
DpnII	GATC	3 cut(s)	78, 330, 417
EaeI	YGGCCR	2 cut(s)	3, 199
EagI	CGGCCG	1 cut(s)	199
Ecl136II	GAGCTC	1 cut(s)	294
EclXI	CGGCCG	1 cut(s)	199
Eco24I	GRGCYC	1 cut(s)	296
Eco47I	GGWCC	1 cut(s)	204
Eco52I	CGGCCG	1 cut(s)	199
Eco53kI	GAGCTC	1 cut(s)	294
Eco57I	CTGAAG	1 cut(s)	260
EcoICRI	GAGCTC	1 cut(s)	294
EcoO109I	RGGNCCY	1 cut(s)	285
EcoT38I	GRGCYC	1 cut(s)	296
EgeI	GGCGCC	1 cut(s)	253
EheI	GGCGCC	1 cut(s)	253
FaeI	CATG	1 cut(s)	224
FaiI	YATR	2 cut(s)	222, 474
FaqI	GGGAC	2 cut(s)	135, 249
FatI	CATG	1 cut(s)	220
FauI	CCCGC	1 cut(s)	403
Fnu4HI	GCNGC	8 cut(s)	36, 39, 381, 399, 402, 429, 432, 441
FriOI	GRGCYC	1 cut(s)	296
Fsp4HI	GCNGC	8 cut(s)	36, 39, 381, 399, 402, 429, 432, 441
GlaI	GCGC	3 cut(s)	253, 384, 405
GluI	GCNGC	8 cut(s)	36, 39, 381, 399, 402, 429, 432, 441
HaeII	RGCGCY	2 cut(s)	255, 407
HaeIII	GGCC	6 cut(s)	5, 201, 245, 287, 362, 391
HapII	CCGG	9 cut(s)	110, 180, 198, 202, 210, 249, 255, 297, 363
HhaI	GCGC	3 cut(s)	254, 385, 406
Hin1I	GRCGYC	1 cut(s)	252
Hin1II	CATG	1 cut(s)	224
Hin6I	GCGC	3 cut(s)	252, 383, 404
HinP1I	GCGC	3 cut(s)	252, 383, 404
HinfI	GANTC	3 cut(s)	8, 43, 213
HpaII	CCGG	9 cut(s)	110, 180, 198, 202, 210, 249, 255, 297, 363
HphI	GGTGA	1 cut(s)	427
Hpy188I	TCNGA	4 cut(s)	78, 267, 275, 315
Hpy188III	TCNNGA	4 cut(s)	82, 125, 169, 334
Hpy99I	CGWCG	1 cut(s)	35
HpyAV	CCTTC	1 cut(s)	235
HpyCH4III	ACNGT	1 cut(s)	149
HpyCH4V	TGCA	2 cut(s)	177, 375
HpyF10VI	GCNNNNNNNGC	6 cut(s)	35, 251, 300, 407, 437, 440
Hsp92I	GRCGYC	1 cut(s)	252
Hsp92II	CATG	1 cut(s)	224
HspAI	GCGC	3 cut(s)	252, 383, 404
KasI	GGCGCC	1 cut(s)	251
KroI	GCCGGC	1 cut(s)	254
KroNI	GCCGGC	1 cut(s)	256
Kzo9I	GATC	3 cut(s)	78, 330, 417
LmnI	GCTCC	3 cut(s)	112, 139, 299
Lsp1109I	GCAGC	1 cut(s)	415
MalI	GATC	3 cut(s)	80, 332, 419
MboI	GATC	3 cut(s)	78, 330, 417
MboII	GAAGA	1 cut(s)	478
MflI	RGATCY	1 cut(s)	330
MhlI	GDGCHC	2 cut(s)	117, 296
MluCI	AATT	1 cut(s)	482
Mly113I	GGCGCC	1 cut(s)	252
MlyI	GAGTC	1 cut(s)	207
MmeI	TCCRAC	1 cut(s)	293
MreI	CGCCGGCG	1 cut(s)	254
MroNI	GCCGGC	1 cut(s)	254
MslI	CAYNNNNRTG	1 cut(s)	225
MspI	CCGG	9 cut(s)	110, 180, 198, 202, 210, 249, 255, 297, 363
MspR9I	CCNGG	2 cut(s)	298, 364
MvnI	CGCG	2 cut(s)	41, 385
MwoI	GCNNNNNNNGC	6 cut(s)	35, 251, 300, 407, 437, 440
NaeI	GCCGGC	1 cut(s)	256
NarI	GGCGCC	1 cut(s)	252
NciI	CCSGG	2 cut(s)	298, 364
NdeII	GATC	3 cut(s)	78, 330, 417
NgoMIV	GCCGGC	1 cut(s)	254
NlaIII	CATG	1 cut(s)	224
NlaIV	GGNNCC	2 cut(s)	253, 361
NmeAIII	GCCGAG	1 cut(s)	417
PdiI	GCCGGC	1 cut(s)	256
PfeI	GAWTC	2 cut(s)	8, 43
PkrI	GCNGC	8 cut(s)	37, 40, 382, 400, 403, 430, 433, 442
PleI	GAGTC	1 cut(s)	207
PluTI	GGCGCC	1 cut(s)	255
PpsI	GAGTC	1 cut(s)	207
Psp124BI	GAGCTC	1 cut(s)	296
PspN4I	GGNNCC	2 cut(s)	253, 361
PspPI	GGNCC	4 cut(s)	204, 285, 360, 389
PsuI	RGATCY	1 cut(s)	330
RseI	CAYNNNNRTG	1 cut(s)	225
Rsr2I	CGGWCCG	1 cut(s)	204
RsrII	CGGWCCG	1 cut(s)	204
SacI	GAGCTC	1 cut(s)	296
SatI	GCNGC	8 cut(s)	36, 39, 381, 399, 402, 429, 432, 441
Sau3AI	GATC	3 cut(s)	78, 330, 417
Sau96I	GGNCC	4 cut(s)	204, 285, 360, 389
SchI	GAGTC	1 cut(s)	207
ScrFI	CCNGG	2 cut(s)	298, 364
SduI	GDGCHC	2 cut(s)	117, 296
SetI	ASST	9 cut(s)	69, 90, 99, 107, 120, 136, 168, 195, 296
SfoI	GGCGCC	1 cut(s)	253
SgrAI	CRCCGGYG	2 cut(s)	248, 254
SinI	GGWCC	1 cut(s)	204
SmiMI	CAYNNNNRTG	1 cut(s)	225
SmlI	CTYRAG	1 cut(s)	289
SmoI	CTYRAG	1 cut(s)	289
Sse9I	AATT	1 cut(s)	482
SspDI	GGCGCC	1 cut(s)	251
SstI	GAGCTC	1 cut(s)	296
StyD4I	CCNGG	2 cut(s)	296, 362
TaaI	ACNGT	1 cut(s)	149
TaqI	TCGA	1 cut(s)	69
TasI	AATT	1 cut(s)	482
TauI	GCSGC	7 cut(s)	38, 41, 383, 401, 404, 434, 443
TfiI	GAWTC	2 cut(s)	8, 43
TscAI	CASTG	1 cut(s)	346
TseI	GCWGC	1 cut(s)	428
TspDTI	ATGAA	1 cut(s)	209
TspRI	CASTG	1 cut(s)	346
VpaK11BI	GGWCC	1 cut(s)	204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.