Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0009875

Physical Location & Seq

Genomic Coordinates Forward (+)

49367809 .. 49368375

Gene Structure 567 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00428990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGGCCGATTCAACCCAACCCACCACCGCCGTCGCCTCCGCGAAGCCCTACAACCCCTACCAAGACCTCGACGCTCCGATCAAGAAGCTCTACTACCTCCCAACCTCGCCGGAGCACCTCTATCCCGAAAAAGCTTCATACCGTCCCTTTGGAGACAACCTCGTGAGCTGCACCGGCATTTGCTACCTCTCCGGCCGGACCGCCGGACTCGTCCACGGCGGTGTTAGGGGACTCAATGCCGCCGGTGCCGGCGAGCCTCGGAGGGTCAGAATGAGCAGGGCTTTGAGCTCCGGTGGCGAGTTGGGTCGGAGGGGTAAAGATGGGATCTTGAACACTGGTGTTGCTGGATTTGGGGCTGGGGTGGTGTACAAGGCGGCGCTTGGGCCGAGGGCGGCGGCGCTTGCGGGGGTGATCGGTGGTGCTGCGGCTGTGGCGGCGGTTTCGGGGAAAATGGCGGTGAAGAAGTATGTGGGAGAATTGGGTATTTGGGGGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005744 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0017038 GO:0019866 GO:0030150 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031304 GO:0031305 GO:0031966 GO:0031967 GO:0031975 GO:0032592 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0098573 GO:0098796 GO:0098798 GO:0098800 GO:1990542

KEGG Pathways

Metabolic & Signaling

ko04212 map04212

Pfam Domains

Protein Families

Tim17

Protein Analysis

165

Amino Acids

16.89

Weight (kDa)

9.73

Isoelectric Point (pI)

32.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009875)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04800
fragaria_vesca	FvH4_6g03320
rosa_chinensis	RchiOBHm_Chr3g0451811
rosa_laevigata	RLG00000025647 RLG00000033674
rosa_multiflora	Rmu_sc0001152.1_g000039 Rmu_sc0002314.1_g000001 Rmu_sc0006510.1_g000015 Rmu_sc0012070.1_g000001
rosa_roxburghii	Rroxscaffold_164G00436300 Rroxscaffold_6G00428990
rosa_rugosa	Rorug02G0636500
rosa_samantha	Rh3AG038000 Rh3BG039100 Rh3BG039200 Rh3CG037600 Rh3CG037700 Rh3DG038400 Rh3DG038500 Rh5DG439200
rosa_wichuraiana	Rw3G002830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	245
AccII	CGCG	1 cut(s)	41
AclWI	GGATC	1 cut(s)	332
AcoI	YGGCCR	2 cut(s)	3, 193
AfaI	GTAC	1 cut(s)	368
AgsI	TTSAA	2 cut(s)	12, 331
AleI	CACNNNNGTG	1 cut(s)	219
AluBI	AGCT	4 cut(s)	88, 134, 168, 288
AluI	AGCT	4 cut(s)	88, 134, 168, 288
Alw21I	GWGCWC	2 cut(s)	117, 290
Alw26I	GTCTC	1 cut(s)	147
AlwI	GGATC	1 cut(s)	332
AoxI	GGCC	3 cut(s)	3, 193, 383
ApeKI	GCWGC	2 cut(s)	168, 422
AspLEI	GCGC	2 cut(s)	379, 400
AspS9I	GGNCC	2 cut(s)	198, 383
AsuHPI	GGTGA	2 cut(s)	421, 469
AvaII	GGWCC	1 cut(s)	198
BanI	GGYRCC	1 cut(s)	245
BanII	GRGCYC	1 cut(s)	290
BarI	GAAGNNNNNNTAC	2 cut(s)	77, 109
BauI	CACGAG	1 cut(s)	161
Bbv12I	GWGCWC	2 cut(s)	117, 290
BbvI	GCAGC	2 cut(s)	155, 409
BccI	CCATC	1 cut(s)	314
BceAI	ACGGC	2 cut(s)	14, 232
BcoDI	GTCTC	1 cut(s)	147
BfoI	RGCGCY	2 cut(s)	380, 401
BisI	GCNGC	8 cut(s)	169, 240, 375, 393, 396, 423, 426, 435
BlsI	GCNGC	8 cut(s)	170, 241, 376, 394, 397, 424, 427, 436
Bme18I	GGWCC	1 cut(s)	198
BmgT120I	GGNCC	2 cut(s)	198, 383
BmiI	GGNNCC	1 cut(s)	247
BplI	GAGNNNNNCTC	2 cut(s)	144, 176
BsaJI	CCNNGG	3 cut(s)	214, 257, 386
BsaWI	WCCGGW	1 cut(s)	290
Bse118I	RCCGGY	3 cut(s)	173, 242, 248
Bse1I	ACTGG	1 cut(s)	340
BseDI	CCNNGG	3 cut(s)	214, 257, 386
BseNI	ACTGG	1 cut(s)	340
BseX3I	CGGCCG	1 cut(s)	193
BseXI	GCAGC	2 cut(s)	155, 409
BseYI	CCCAGC	1 cut(s)	356
BsgI	GTGCAG	1 cut(s)	154
Bsh1236I	CGCG	1 cut(s)	41
Bsh1285I	CGRYCG	1 cut(s)	196
BshFI	GGCC	3 cut(s)	5, 195, 385
BshNI	GGYRCC	1 cut(s)	245
BsiEI	CGRYCG	1 cut(s)	196
BsiHKAI	GWGCWC	2 cut(s)	117, 290
BsiSI	CCGG	8 cut(s)	110, 174, 192, 196, 204, 243, 249, 291
BslFI	GGGAC	2 cut(s)	129, 243
BsmAI	GTCTC	1 cut(s)	147
BsmFI	GGGAC	2 cut(s)	129, 243
BsnI	GGCC	3 cut(s)	5, 195, 385
Bsp1286I	GDGCHC	2 cut(s)	117, 290
Bsp1407I	TGTACA	1 cut(s)	366
Bsp143I	GATC	3 cut(s)	78, 324, 411
BspANI	GGCC	3 cut(s)	5, 195, 385
BspFNI	CGCG	1 cut(s)	41
BspLI	GGNNCC	1 cut(s)	247
BspPI	GGATC	1 cut(s)	332
BspT107I	GGYRCC	1 cut(s)	245
BsrFI	RCCGGY	3 cut(s)	173, 242, 248
BsrGI	TGTACA	1 cut(s)	366
BsrI	ACTGG	1 cut(s)	340
BssAI	RCCGGY	3 cut(s)	173, 242, 248
BssECI	CCNNGG	3 cut(s)	214, 257, 386
BssMI	GATC	3 cut(s)	78, 324, 411
BssSI	CACGAG	1 cut(s)	161
Bst2BI	CACGAG	1 cut(s)	161
Bst4CI	ACNGT	1 cut(s)	143
BstAUI	TGTACA	1 cut(s)	366
BstC8I	GCNNGC	3 cut(s)	250, 254, 402
BstDSI	CCRYGG	1 cut(s)	214
BstFNI	CGCG	1 cut(s)	41
BstH2I	RGCGCY	2 cut(s)	380, 401
BstHHI	GCGC	2 cut(s)	379, 400
BstKTI	GATC	3 cut(s)	81, 327, 414
BstMAI	GTCTC	1 cut(s)	147
BstMBI	GATC	3 cut(s)	78, 324, 411
BstMCI	CGRYCG	1 cut(s)	196
BstMWI	GCNNNNNNNGC	6 cut(s)	174, 245, 294, 401, 431, 434
BstUI	CGCG	1 cut(s)	41
BstV1I	GCAGC	2 cut(s)	155, 409
BstX2I	RGATCY	1 cut(s)	324
BstYI	RGATCY	1 cut(s)	324
BstZI	CGGCCG	1 cut(s)	193
BsuRI	GGCC	3 cut(s)	5, 195, 385
BtgI	CCRYGG	1 cut(s)	214
BtsIMutI	CAGTG	1 cut(s)	333
Cac8I	GCNNGC	3 cut(s)	250, 254, 402
CfoI	GCGC	2 cut(s)	379, 400
Cfr10I	RCCGGY	3 cut(s)	173, 242, 248
Cfr13I	GGNCC	2 cut(s)	198, 383
CpoI	CGGWCCG	1 cut(s)	198
CseI	GACGC	1 cut(s)	80
Csp6I	GTAC	1 cut(s)	367
CspI	CGGWCCG	1 cut(s)	198
CviQI	GTAC	1 cut(s)	367
DpnI	GATC	3 cut(s)	80, 326, 413
DpnII	GATC	3 cut(s)	78, 324, 411
EaeI	YGGCCR	2 cut(s)	3, 193
EagI	CGGCCG	1 cut(s)	193
Ecl136II	GAGCTC	1 cut(s)	288
EclXI	CGGCCG	1 cut(s)	193
Eco24I	GRGCYC	1 cut(s)	290
Eco47I	GGWCC	1 cut(s)	198
Eco52I	CGGCCG	1 cut(s)	193
Eco53kI	GAGCTC	1 cut(s)	288
EcoICRI	GAGCTC	1 cut(s)	288
EcoT38I	GRGCYC	1 cut(s)	290
FaiI	YATR	2 cut(s)	139, 468
FaqI	GGGAC	2 cut(s)	129, 243
FauI	CCCGC	1 cut(s)	397
Fnu4HI	GCNGC	8 cut(s)	169, 240, 375, 393, 396, 423, 426, 435
FriOI	GRGCYC	1 cut(s)	290
Fsp4HI	GCNGC	8 cut(s)	169, 240, 375, 393, 396, 423, 426, 435
GlaI	GCGC	2 cut(s)	378, 399
GluI	GCNGC	8 cut(s)	169, 240, 375, 393, 396, 423, 426, 435
GsaI	CCCAGC	1 cut(s)	360
HaeII	RGCGCY	2 cut(s)	380, 401
HaeIII	GGCC	3 cut(s)	5, 195, 385
HapII	CCGG	8 cut(s)	110, 174, 192, 196, 204, 243, 249, 291
HgaI	GACGC	1 cut(s)	80
HhaI	GCGC	2 cut(s)	379, 400
Hin6I	GCGC	2 cut(s)	377, 398
HinP1I	GCGC	2 cut(s)	377, 398
HindIII	AAGCTT	1 cut(s)	132
HinfI	GANTC	3 cut(s)	8, 207, 231
HpaII	CCGG	8 cut(s)	110, 174, 192, 196, 204, 243, 249, 291
HphI	GGTGA	2 cut(s)	421, 469
Hpy166II	GTNNAC	2 cut(s)	214, 367
Hpy188I	TCNGA	4 cut(s)	78, 261, 269, 309
Hpy188III	TCNNGA	4 cut(s)	82, 125, 163, 328
Hpy8I	GTNNAC	2 cut(s)	214, 367
Hpy99I	CGWCG	2 cut(s)	35, 74
HpyCH4III	ACNGT	1 cut(s)	143
HpyCH4V	TGCA	1 cut(s)	171
HpyF10VI	GCNNNNNNNGC	6 cut(s)	174, 245, 294, 401, 431, 434
HspAI	GCGC	2 cut(s)	377, 398
KroI	GCCGGC	1 cut(s)	248
KroNI	GCCGGC	1 cut(s)	250
Kzo9I	GATC	3 cut(s)	78, 324, 411
LmnI	GCTCC	3 cut(s)	79, 112, 293
Lsp1109I	GCAGC	2 cut(s)	155, 409
MalI	GATC	3 cut(s)	80, 326, 413
MboI	GATC	3 cut(s)	78, 324, 411
MboII	GAAGA	1 cut(s)	472
MflI	RGATCY	1 cut(s)	324
MhlI	GDGCHC	2 cut(s)	117, 290
MluCI	AATT	1 cut(s)	476
MlyI	GAGTC	2 cut(s)	201, 225
MmeI	TCCRAC	1 cut(s)	287
MroNI	GCCGGC	1 cut(s)	248
MslI	CAYNNNNRTG	1 cut(s)	219
MspI	CCGG	8 cut(s)	110, 174, 192, 196, 204, 243, 249, 291
MvnI	CGCG	1 cut(s)	41
MwoI	GCNNNNNNNGC	6 cut(s)	174, 245, 294, 401, 431, 434
NaeI	GCCGGC	1 cut(s)	250
NdeII	GATC	3 cut(s)	78, 324, 411
NgoMIV	GCCGGC	1 cut(s)	248
NlaIV	GGNNCC	1 cut(s)	247
NmeAIII	GCCGAG	1 cut(s)	411
OliI	CACNNNNGTG	1 cut(s)	219
PdiI	GCCGGC	1 cut(s)	250
PfeI	GAWTC	1 cut(s)	8
PkrI	GCNGC	8 cut(s)	170, 241, 376, 394, 397, 424, 427, 436
PleI	GAGTC	2 cut(s)	201, 225
PpsI	GAGTC	2 cut(s)	201, 225
Psp124BI	GAGCTC	1 cut(s)	290
PspFI	CCCAGC	1 cut(s)	356
PspN4I	GGNNCC	1 cut(s)	247
PspPI	GGNCC	2 cut(s)	198, 383
PsuI	RGATCY	1 cut(s)	324
RsaI	GTAC	1 cut(s)	368
RsaNI	GTAC	1 cut(s)	367
RseI	CAYNNNNRTG	1 cut(s)	219
Rsr2I	CGGWCCG	1 cut(s)	198
RsrII	CGGWCCG	1 cut(s)	198
SacI	GAGCTC	1 cut(s)	290
SatI	GCNGC	8 cut(s)	169, 240, 375, 393, 396, 423, 426, 435
Sau3AI	GATC	3 cut(s)	78, 324, 411
Sau96I	GGNCC	2 cut(s)	198, 383
SchI	GAGTC	2 cut(s)	201, 225
SduI	GDGCHC	2 cut(s)	117, 290
SgrAI	CRCCGGYG	1 cut(s)	242
SinI	GGWCC	1 cut(s)	198
SmiMI	CAYNNNNRTG	1 cut(s)	219
Sse9I	AATT	1 cut(s)	476
SstI	GAGCTC	1 cut(s)	290
TaaI	ACNGT	1 cut(s)	143
TaqI	TCGA	1 cut(s)	69
TasI	AATT	1 cut(s)	476
TatI	WGTACW	1 cut(s)	366
TauI	GCSGC	6 cut(s)	242, 377, 395, 398, 428, 437
TfiI	GAWTC	1 cut(s)	8
TscAI	CASTG	1 cut(s)	340
TseI	GCWGC	2 cut(s)	168, 422
TspDTI	ATGAA	1 cut(s)	126
TspRI	CASTG	1 cut(s)	340
VpaK11BI	GGWCC	1 cut(s)	198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.