Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0009875

Physical Location & Seq

Genomic Coordinates Reverse (-)

30596238 .. 30598509

Gene Structure 2272 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033674

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGCCGCAGAAGATGAATGGTTTTGCTGCAGCAGAGTCGTCGTCATCATCAACTGCGACTCCGTCCACTTCATCAAGGCCCACTGGTCGTGGGACCGTCGGACTCGTCTACAACGCTGTTCAGGGACTCAATGCCGCTAGCGAGCCTCAAAAGGTCAGAATGAGTAAGGCTTTGAGCTCCTGGGGTAAGGTGTGTTGGAGGTACTCGAACACTATGGGGGTTGTTGAGTTGTATTTCTCTGTGATTAAGAGTGGGATTGACTATTACAGGGGTAGAGATGGGATCTTGAACACTGGTGTTGTTGGATTTGGGGTACTCAAGTGGCATCGACTCCCCGGTCTTTTCCATGTCCATCAGCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005744 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0017038 GO:0019866 GO:0030150 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031304 GO:0031305 GO:0031966 GO:0031967 GO:0031975 GO:0032592 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0098573 GO:0098796 GO:0098798 GO:0098800 GO:1990542

KEGG Pathways

Metabolic & Signaling

ko04212 map04212

Pfam Domains

Protein Families

Tim17

Protein Analysis

121

Amino Acids

13.01

Weight (kDa)

10.08

Isoelectric Point (pI)

36.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tim17	PF02466	31 - 103	1.6e-11	Tim17/Tim22/Tim23/Pmp24 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0009875)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04800
fragaria_vesca	FvH4_6g03320
rosa_chinensis	RchiOBHm_Chr3g0451811
rosa_laevigata	RLG00000025647 RLG00000033674
rosa_multiflora	Rmu_sc0001152.1_g000039 Rmu_sc0002314.1_g000001 Rmu_sc0006510.1_g000015 Rmu_sc0012070.1_g000001
rosa_roxburghii	Rroxscaffold_164G00436300 Rroxscaffold_6G00428990
rosa_rugosa	Rorug02G0636500
rosa_samantha	Rh3AG038000 Rh3BG039100 Rh3BG039200 Rh3CG037600 Rh3CG037700 Rh3DG038400 Rh3DG038500 Rh5DG439200
rosa_wichuraiana	Rw3G002830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	336
AccI	GTMKAC	1 cut(s)	108
AciI	CCGC	2 cut(s)	5, 135
AclWI	GGATC	1 cut(s)	290
AfaI	GTAC	2 cut(s)	203, 315
AgsI	TTSAA	1 cut(s)	289
AjnI	CCWGG	1 cut(s)	179
AluBI	AGCT	1 cut(s)	177
AluI	AGCT	1 cut(s)	177
Alw21I	GWGCWC	1 cut(s)	179
AlwI	GGATC	1 cut(s)	290
AoxI	GGCC	1 cut(s)	77
ApeKI	GCWGC	2 cut(s)	26, 29
AspS9I	GGNCC	2 cut(s)	78, 93
AsuC2I	CCSGG	1 cut(s)	336
AsuNHI	GCTAGC	1 cut(s)	137
AvaII	GGWCC	1 cut(s)	93
BaeI	ACNNNNGTAYC	2 cut(s)	305, 338
BanII	GRGCYC	1 cut(s)	179
Bbv12I	GWGCWC	1 cut(s)	179
BbvI	GCAGC	2 cut(s)	13, 41
BccI	CCATC	2 cut(s)	272, 360
BcgI	CGANNNNNNTGC	4 cut(s)	18, 21, 52, 55
BciT130I	CCWGG	1 cut(s)	181
BcnI	CCSGG	1 cut(s)	336
BfaI	CTAG	1 cut(s)	138
BfmI	CTRYAG	1 cut(s)	27
BisI	GCNGC	4 cut(s)	5, 27, 30, 135
BlsI	GCNGC	4 cut(s)	6, 28, 31, 136
Bme1390I	CCNGG	2 cut(s)	181, 336
Bme18I	GGWCC	1 cut(s)	93
BmgT120I	GGNCC	2 cut(s)	78, 93
BmiI	GGNNCC	1 cut(s)	94
BmrFI	CCNGG	2 cut(s)	181, 336
BmsI	GCATC	1 cut(s)	334
BmtI	GCTAGC	1 cut(s)	141
BpuEI	CTTGAG	1 cut(s)	302
BpuMI	CCSGG	1 cut(s)	336
BsaJI	CCNNGG	2 cut(s)	180, 334
BsaXI	ACNNNNNCTCC	2 cut(s)	43, 73
Bse1I	ACTGG	2 cut(s)	88, 298
BseBI	CCWGG	1 cut(s)	181
BseDI	CCNNGG	2 cut(s)	180, 334
BseNI	ACTGG	2 cut(s)	88, 298
BseXI	GCAGC	2 cut(s)	13, 41
BshFI	GGCC	1 cut(s)	79
BsiHKAI	GWGCWC	1 cut(s)	179
BsiSI	CCGG	1 cut(s)	336
BslFI	GGGAC	2 cut(s)	106, 138
BsmFI	GGGAC	2 cut(s)	106, 138
BsnI	GGCC	1 cut(s)	79
Bsp1286I	GDGCHC	1 cut(s)	179
Bsp143I	GATC	1 cut(s)	282
BspACI	CCGC	2 cut(s)	5, 135
BspANI	GGCC	1 cut(s)	79
BspLI	GGNNCC	1 cut(s)	94
BspMAI	CTGCAG	1 cut(s)	31
BspOI	GCTAGC	1 cut(s)	141
BspPI	GGATC	1 cut(s)	290
BsrI	ACTGG	2 cut(s)	88, 298
BssECI	CCNNGG	2 cut(s)	180, 334
BssMI	GATC	1 cut(s)	282
Bst2UI	CCWGG	1 cut(s)	181
Bst4CI	ACNGT	1 cut(s)	97
BstC8I	GCNNGC	2 cut(s)	139, 143
BstKTI	GATC	1 cut(s)	285
BstMBI	GATC	1 cut(s)	282
BstNI	CCWGG	1 cut(s)	181
BstSCI	CCNGG	2 cut(s)	179, 334
BstSFI	CTRYAG	1 cut(s)	27
BstV1I	GCAGC	2 cut(s)	13, 41
BstX2I	RGATCY	1 cut(s)	282
BstYI	RGATCY	1 cut(s)	282
BsuRI	GGCC	1 cut(s)	79
BtsIMutI	CAGTG	2 cut(s)	81, 291
Cac8I	GCNNGC	2 cut(s)	139, 143
Cfr13I	GGNCC	2 cut(s)	78, 93
Csp6I	GTAC	2 cut(s)	202, 314
CviAII	CATG	1 cut(s)	347
CviJI	RGCY	4 cut(s)	79, 145, 170, 177
CviKI_1	RGCY	4 cut(s)	79, 145, 170, 177
CviQI	GTAC	2 cut(s)	202, 314
DpnI	GATC	1 cut(s)	284
DpnII	GATC	1 cut(s)	282
DrdI	GACNNNNNNGTC	1 cut(s)	336
DseDI	GACNNNNNNGTC	1 cut(s)	336
Ecl136II	GAGCTC	1 cut(s)	177
Eco24I	GRGCYC	1 cut(s)	179
Eco47I	GGWCC	1 cut(s)	93
Eco53kI	GAGCTC	1 cut(s)	177
EcoICRI	GAGCTC	1 cut(s)	177
EcoRII	CCWGG	1 cut(s)	179
EcoT38I	GRGCYC	1 cut(s)	179
FaeI	CATG	1 cut(s)	350
FaiI	YATR	2 cut(s)	215, 348
FaqI	GGGAC	2 cut(s)	106, 138
FatI	CATG	1 cut(s)	346
FblI	GTMKAC	1 cut(s)	108
Fnu4HI	GCNGC	4 cut(s)	5, 27, 30, 135
FriOI	GRGCYC	1 cut(s)	179
Fsp4HI	GCNGC	4 cut(s)	5, 27, 30, 135
FspBI	CTAG	1 cut(s)	138
GluI	GCNGC	4 cut(s)	5, 27, 30, 135
HaeIII	GGCC	1 cut(s)	79
HapII	CCGG	1 cut(s)	336
Hin1II	CATG	1 cut(s)	350
HinfI	GANTC	5 cut(s)	35, 58, 102, 126, 330
HpaII	CCGG	1 cut(s)	336
Hpy166II	GTNNAC	2 cut(s)	66, 109
Hpy188I	TCNGA	2 cut(s)	101, 158
Hpy188III	TCNNGA	1 cut(s)	286
Hpy8I	GTNNAC	2 cut(s)	66, 109
Hpy99I	CGWCG	2 cut(s)	43, 101
HpyCH4III	ACNGT	1 cut(s)	97
HpyCH4V	TGCA	1 cut(s)	29
Hsp92II	CATG	1 cut(s)	350
Kzo9I	GATC	1 cut(s)	282
LmnI	GCTCC	1 cut(s)	182
LpnPI	CCDG	7 cut(s)	69, 107, 166, 193, 253, 279, 349
Lsp1109I	GCAGC	2 cut(s)	13, 41
LweI	GCATC	1 cut(s)	334
MaeI	CTAG	1 cut(s)	138
MalI	GATC	1 cut(s)	284
MboI	GATC	1 cut(s)	282
MboII	GAAGA	1 cut(s)	22
MflI	RGATCY	1 cut(s)	282
MhlI	GDGCHC	1 cut(s)	179
MlyI	GAGTC	5 cut(s)	44, 52, 96, 120, 324
MmeI	TCCRAC	3 cut(s)	79, 176, 283
MnlI	CCTC	2 cut(s)	156, 192
MseI	TTAA	1 cut(s)	246
MspI	CCGG	1 cut(s)	336
MspR9I	CCNGG	2 cut(s)	181, 336
MvaI	CCWGG	1 cut(s)	181
NciI	CCSGG	1 cut(s)	336
NdeII	GATC	1 cut(s)	282
NheI	GCTAGC	1 cut(s)	137
NlaIII	CATG	1 cut(s)	350
NlaIV	GGNNCC	1 cut(s)	94
PflFI	GACNNNGTC	1 cut(s)	61
PkrI	GCNGC	4 cut(s)	6, 28, 31, 136
PleI	GAGTC	5 cut(s)	43, 52, 96, 120, 324
PpsI	GAGTC	5 cut(s)	43, 52, 96, 120, 324
Psp124BI	GAGCTC	1 cut(s)	179
Psp6I	CCWGG	1 cut(s)	179
PspGI	CCWGG	1 cut(s)	179
PspN4I	GGNNCC	1 cut(s)	94
PspPI	GGNCC	2 cut(s)	78, 93
PstI	CTGCAG	1 cut(s)	31
PsuI	RGATCY	1 cut(s)	282
PsyI	GACNNNGTC	1 cut(s)	61
RsaI	GTAC	2 cut(s)	203, 315
RsaNI	GTAC	2 cut(s)	202, 314
SacI	GAGCTC	1 cut(s)	179
SaqAI	TTAA	1 cut(s)	246
SatI	GCNGC	4 cut(s)	5, 27, 30, 135
Sau3AI	GATC	1 cut(s)	282
Sau96I	GGNCC	2 cut(s)	78, 93
SchI	GAGTC	5 cut(s)	44, 52, 96, 120, 324
ScrFI	CCNGG	2 cut(s)	181, 336
SduI	GDGCHC	1 cut(s)	179
SetI	ASST	4 cut(s)	156, 179, 192, 203
SfaNI	GCATC	1 cut(s)	334
SfcI	CTRYAG	1 cut(s)	27
SinI	GGWCC	1 cut(s)	93
SmlI	CTYRAG	1 cut(s)	317
SmoI	CTYRAG	1 cut(s)	317
SsiI	CCGC	2 cut(s)	5, 135
SspMI	CTAG	1 cut(s)	138
SstI	GAGCTC	1 cut(s)	179
StyD4I	CCNGG	2 cut(s)	179, 334
TaaI	ACNGT	1 cut(s)	97
TaqI	TCGA	2 cut(s)	206, 328
TauI	GCSGC	2 cut(s)	7, 137
Tru1I	TTAA	1 cut(s)	246
Tru9I	TTAA	1 cut(s)	246
TscAI	CASTG	2 cut(s)	88, 298
TseI	GCWGC	2 cut(s)	26, 29
TspDTI	ATGAA	2 cut(s)	29, 60
TspGWI	ACGGA	1 cut(s)	51
TspRI	CASTG	2 cut(s)	88, 298
Tth111I	GACNNNGTC	1 cut(s)	61
VpaK11BI	GGWCC	1 cut(s)	93
XmiI	GTMKAC	1 cut(s)	108
XspI	CTAG	1 cut(s)	138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.