Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0009875

Physical Location & Seq

Genomic Coordinates Reverse (-)

47322613 .. 47323184

Gene Structure 572 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025647

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGGCCGATTCAACCAAACCCACCACCGCCATCGCCGCCGCGAAGCCCTACAACCCCTACCAAGACCTCGACGCTCCGATCAAGAAGCTCTACTACCTCCCAACCTCGCCGGAGCACCTCTATCCCGAAAAGCTCGAAAACCCTACCGTCCCTTTGGAGACAACCTCGGGTAAAGATGGGATCTTGAACACTGGTGTTGCTGGATTTGGGGCTGGGGTGGTGTACAAGGCGGCGCGTGGGCTGAGGGCGGCGGCGCTTGCGGGGGTGATCGGTGGTGCTGCGGCTGTGGCGGCGGTTTCGGGGAAAATGGCGGTGAAGAAGTATGTGGGAGAATTGGGTATTTGGGGTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005744 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0017038 GO:0019866 GO:0030150 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031304 GO:0031305 GO:0031966 GO:0031967 GO:0031975 GO:0032592 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0098573 GO:0098796 GO:0098798 GO:0098800 GO:1990542

KEGG Pathways

Metabolic & Signaling

ko04212 map04212

Pfam Domains

Protein Families

Tim17

Protein Analysis

118

Amino Acids

12.05

Weight (kDa)

9.13

Isoelectric Point (pI)

21.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009875)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04800
fragaria_vesca	FvH4_6g03320
rosa_chinensis	RchiOBHm_Chr3g0451811
rosa_laevigata	RLG00000025647 RLG00000033674
rosa_multiflora	Rmu_sc0001152.1_g000039 Rmu_sc0002314.1_g000001 Rmu_sc0006510.1_g000015 Rmu_sc0012070.1_g000001
rosa_roxburghii	Rroxscaffold_164G00436300 Rroxscaffold_6G00428990
rosa_rugosa	Rorug02G0636500
rosa_samantha	Rh3AG038000 Rh3BG039100 Rh3BG039200 Rh3CG037600 Rh3CG037700 Rh3DG038400 Rh3DG038500 Rh5DG439200
rosa_wichuraiana	Rw3G002830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	41, 235
AclWI	GGATC	1 cut(s)	188
AcoI	YGGCCR	1 cut(s)	3
AfaI	GTAC	1 cut(s)	224
AgsI	TTSAA	2 cut(s)	12, 187
AluBI	AGCT	2 cut(s)	88, 133
AluI	AGCT	2 cut(s)	88, 133
Alw21I	GWGCWC	1 cut(s)	117
Alw26I	GTCTC	1 cut(s)	152
AlwI	GGATC	1 cut(s)	188
Ama87I	CYCGRG	1 cut(s)	166
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	278
AspLEI	GCGC	2 cut(s)	235, 256
AsuHPI	GGTGA	2 cut(s)	277, 325
AvaI	CYCGRG	1 cut(s)	166
BarI	GAAGNNNNNNTAC	2 cut(s)	77, 109
Bbv12I	GWGCWC	1 cut(s)	117
BbvCI	CCTCAGC	1 cut(s)	242
BbvI	GCAGC	1 cut(s)	265
BccI	CCATC	2 cut(s)	38, 170
BcoDI	GTCTC	1 cut(s)	152
BfoI	RGCGCY	1 cut(s)	257
BisI	GCNGC	8 cut(s)	36, 39, 231, 249, 252, 279, 282, 291
BlsI	GCNGC	8 cut(s)	37, 40, 232, 250, 253, 280, 283, 292
BmeT110I	CYCGRG	1 cut(s)	166
BplI	GAGNNNNNCTC	2 cut(s)	149, 181
Bpu10I	CCTNAGC	1 cut(s)	242
BsaJI	CCNNGG	1 cut(s)	165
Bse1I	ACTGG	1 cut(s)	196
BseDI	CCNNGG	1 cut(s)	165
BseMII	CTCAG	1 cut(s)	233
BseNI	ACTGG	1 cut(s)	196
BseXI	GCAGC	1 cut(s)	265
BseYI	CCCAGC	1 cut(s)	212
Bsh1236I	CGCG	2 cut(s)	41, 235
BshFI	GGCC	1 cut(s)	5
BsiHKAI	GWGCWC	1 cut(s)	117
BsiHKCI	CYCGRG	1 cut(s)	166
BsiSI	CCGG	1 cut(s)	110
BslFI	GGGAC	1 cut(s)	134
BsmAI	GTCTC	1 cut(s)	152
BsmFI	GGGAC	1 cut(s)	134
BsnI	GGCC	1 cut(s)	5
BsoBI	CYCGRG	1 cut(s)	166
Bsp1286I	GDGCHC	1 cut(s)	117
Bsp1407I	TGTACA	1 cut(s)	222
Bsp143I	GATC	3 cut(s)	78, 180, 267
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	234
BspFNI	CGCG	2 cut(s)	41, 235
BspPI	GGATC	1 cut(s)	188
BsrGI	TGTACA	1 cut(s)	222
BsrI	ACTGG	1 cut(s)	196
BssECI	CCNNGG	1 cut(s)	165
BssMI	GATC	3 cut(s)	78, 180, 267
Bst4CI	ACNGT	1 cut(s)	148
BstAUI	TGTACA	1 cut(s)	222
BstC8I	GCNNGC	1 cut(s)	258
BstDEI	CTNAG	1 cut(s)	242
BstFNI	CGCG	2 cut(s)	41, 235
BstH2I	RGCGCY	1 cut(s)	257
BstHHI	GCGC	2 cut(s)	235, 256
BstKTI	GATC	3 cut(s)	81, 183, 270
BstMAI	GTCTC	1 cut(s)	152
BstMBI	GATC	3 cut(s)	78, 180, 267
BstMWI	GCNNNNNNNGC	4 cut(s)	35, 257, 287, 290
BstUI	CGCG	2 cut(s)	41, 235
BstV1I	GCAGC	1 cut(s)	265
BstX2I	RGATCY	1 cut(s)	180
BstYI	RGATCY	1 cut(s)	180
BsuRI	GGCC	1 cut(s)	5
BtgZI	GCGATG	1 cut(s)	16
BtsIMutI	CAGTG	1 cut(s)	189
Cac8I	GCNNGC	1 cut(s)	258
CfoI	GCGC	2 cut(s)	235, 256
CseI	GACGC	1 cut(s)	80
Csp6I	GTAC	1 cut(s)	223
CviJI	RGCY	7 cut(s)	5, 46, 88, 133, 212, 241, 284
CviKI_1	RGCY	7 cut(s)	5, 46, 88, 133, 212, 241, 284
CviQI	GTAC	1 cut(s)	223
DdeI	CTNAG	1 cut(s)	242
DpnI	GATC	3 cut(s)	80, 182, 269
DpnII	GATC	3 cut(s)	78, 180, 267
EaeI	YGGCCR	1 cut(s)	3
Eco88I	CYCGRG	1 cut(s)	166
FaiI	YATR	1 cut(s)	324
FaqI	GGGAC	1 cut(s)	134
FauI	CCCGC	1 cut(s)	253
Fnu4HI	GCNGC	8 cut(s)	36, 39, 231, 249, 252, 279, 282, 291
Fsp4HI	GCNGC	8 cut(s)	36, 39, 231, 249, 252, 279, 282, 291
GlaI	GCGC	2 cut(s)	234, 255
GluI	GCNGC	8 cut(s)	36, 39, 231, 249, 252, 279, 282, 291
GsaI	CCCAGC	1 cut(s)	216
HaeII	RGCGCY	1 cut(s)	257
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	110
HgaI	GACGC	1 cut(s)	80
HhaI	GCGC	2 cut(s)	235, 256
Hin6I	GCGC	2 cut(s)	233, 254
HinP1I	GCGC	2 cut(s)	233, 254
HinfI	GANTC	1 cut(s)	8
HpaII	CCGG	1 cut(s)	110
HphI	GGTGA	2 cut(s)	277, 325
Hpy166II	GTNNAC	1 cut(s)	223
Hpy188I	TCNGA	1 cut(s)	78
Hpy188III	TCNNGA	3 cut(s)	82, 125, 184
Hpy8I	GTNNAC	1 cut(s)	223
Hpy99I	CGWCG	1 cut(s)	74
HpyCH4III	ACNGT	1 cut(s)	148
HpyF10VI	GCNNNNNNNGC	4 cut(s)	35, 257, 287, 290
HpyF3I	CTNAG	1 cut(s)	242
HspAI	GCGC	2 cut(s)	233, 254
Kzo9I	GATC	3 cut(s)	78, 180, 267
LmnI	GCTCC	2 cut(s)	79, 112
LpnPI	CCDG	4 cut(s)	123, 177, 186, 198
Lsp1109I	GCAGC	1 cut(s)	265
MalI	GATC	3 cut(s)	80, 182, 269
MboI	GATC	3 cut(s)	78, 180, 267
MboII	GAAGA	1 cut(s)	328
MflI	RGATCY	1 cut(s)	180
MhlI	GDGCHC	1 cut(s)	117
MluCI	AATT	1 cut(s)	332
MnlI	CCTC	6 cut(s)	77, 107, 115, 128, 175, 237
MspI	CCGG	1 cut(s)	110
MvnI	CGCG	2 cut(s)	41, 235
MwoI	GCNNNNNNNGC	4 cut(s)	35, 257, 287, 290
NdeII	GATC	3 cut(s)	78, 180, 267
PfeI	GAWTC	1 cut(s)	8
PkrI	GCNGC	8 cut(s)	37, 40, 232, 250, 253, 280, 283, 292
PspFI	CCCAGC	1 cut(s)	212
PsuI	RGATCY	1 cut(s)	180
RsaI	GTAC	1 cut(s)	224
RsaNI	GTAC	1 cut(s)	223
SatI	GCNGC	8 cut(s)	36, 39, 231, 249, 252, 279, 282, 291
Sau3AI	GATC	3 cut(s)	78, 180, 267
SduI	GDGCHC	1 cut(s)	117
SetI	ASST	7 cut(s)	69, 90, 99, 107, 120, 135, 167
Sse9I	AATT	1 cut(s)	332
TaaI	ACNGT	1 cut(s)	148
TaqI	TCGA	2 cut(s)	69, 135
TasI	AATT	1 cut(s)	332
TatI	WGTACW	1 cut(s)	222
TauI	GCSGC	7 cut(s)	38, 41, 233, 251, 254, 284, 293
TfiI	GAWTC	1 cut(s)	8
TscAI	CASTG	1 cut(s)	196
TseI	GCWGC	1 cut(s)	278
TspRI	CASTG	1 cut(s)	196

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.