AT3G04860

Plant protein of unknown function (DUF868)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0004954
Physical Location & Seq
Reverse (-)
1338827 .. 1340623
1797 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G04860.1

Sequence Viewer

Length: 870 bp
ATGAGAGATTTTCCTTCTTGCTCTGGTGAAAATGGTGTTCAGATTGCGGACTCTTCGTCTTCCTCGAGCGCTGGAAGAAATGCTCAGAATTTGGTAATATGCATCTACCGTTGCCGCATCCGAGGTAGGACTTGCTTGATCACAGTCACATGGACTAAGAATCTGATGGGTCAGTGTGTTACCGTGGGGGTTGATGATTCTTGCAACCGAAGTCTGTGTAAAGTCGAGATTAAGCCGTGGCTCTTCACTAAACGAAAAGGGTCCAAGACTCTAGAGGCGTATGCCTGTAATATCGATGTTTTCTGGGATCTCTCGTCTGCTAAATTTGGATCCAGCCCTGAACCTTTAGGAGGGTTCTATGTTGGAGTTGTTGTTGACAAAGAGATGGTTCTTCTTCTTGGTGATATGAAGAAAGAAGCTTTTAAAAAGACGAATGCTGCACCTTCTTCATCTTTAGGTGCTGTGTTCATTGCTAAGAAAGAGCATGTCTTTGGCAAGAGAACGTTTGCAACTAAAGCTCAGTTTTCAGGTGATGGCAAAACTCATGATCTTGTGATCGAGTGTGACACTAGTCTCAGTGATCCTTGTCTCATTGTTCGTGTCGATGGAAAGATCTTGATGCAAGTGCAGCGGCTTCATTGGAAGTTCCGTGGCAACGATACCATAATTGTCAATAGAATCTCTGTGGAAGTTCTCTGGGATGTCCACAGTTGGTTCTTTGGGTTGCCATCATCACCAGGAAATGCAGTGTTTATGTTCAGGACTTGTCAATCTGTTGAAAAGACCTGGTCTTTCACACAGGTCCCCACGAGCTCAAAATCTCAAAGTTTTGGGTTTTCATTGATTCTGTATGCTTGGAAGAACGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF868

Protein Analysis

289

Amino Acids

32.14

Weight (kDa)

9.1

Isoelectric Point (pI)

36.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF868 PF05910 28 - 287 1.5e-104 Plant protein of unknown function (DUF868)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 47, 115, 631
AclI AACGTT 1 cut(s) 503
AclWI GGATC 4 cut(s) 315, 324, 337, 575
AcsI RAATTY 2 cut(s) 88, 323
AfeI AGCGCT 1 cut(s) 70
AfiI CCNNNNNNNGG 1 cut(s) 350
AgsI TTSAA 1 cut(s) 779
AhdI GACNNNNNGTC 1 cut(s) 55
AhlI ACTAGT 1 cut(s) 569
AjnI CCWGG 2 cut(s) 736, 785
AluBI AGCT 3 cut(s) 419, 518, 813
AluI AGCT 3 cut(s) 419, 518, 813
Alw21I GWGCWC 1 cut(s) 815
Alw26I GTCTC 2 cut(s) 578, 593
AlwI GGATC 4 cut(s) 315, 324, 337, 575
Ama87I CYCGRG 1 cut(s) 64
Aor51HI AGCGCT 1 cut(s) 70
ApeKI GCWGC 2 cut(s) 437, 628
ApoI RAATTY 2 cut(s) 88, 323
AspLEI GCGC 1 cut(s) 71
AspS9I GGNCC 2 cut(s) 261, 802
AsuHPI GGTGA 4 cut(s) 38, 413, 542, 726
AvaI CYCGRG 1 cut(s) 64
AvaII GGWCC 2 cut(s) 261, 802
BamHI GGATCC 1 cut(s) 329
BanII GRGCYC 1 cut(s) 815
BauI CACGAG 1 cut(s) 808
BbsI GAAGAC 1 cut(s) 51
Bbv12I GWGCWC 1 cut(s) 815
BbvI GCAGC 2 cut(s) 424, 640
BccI CCATC 5 cut(s) 160, 379, 527, 599, 736
BceAI ACGGC 1 cut(s) 220
BciT130I CCWGG 2 cut(s) 738, 787
BclI TGATCA 1 cut(s) 138
BcoDI GTCTC 2 cut(s) 578, 593
BcuI ACTAGT 1 cut(s) 569
BfaI CTAG 2 cut(s) 272, 570
BfoI RGCGCY 1 cut(s) 72
BglII AGATCT 1 cut(s) 612
BisI GCNGC 4 cut(s) 115, 438, 629, 632
BlsI GCNGC 4 cut(s) 116, 439, 630, 633
Bme1390I CCNGG 2 cut(s) 738, 787
Bme18I GGWCC 2 cut(s) 261, 802
BmeRI GACNNNNNGTC 1 cut(s) 55
BmeT110I CYCGRG 1 cut(s) 64
BmgT120I GGNCC 2 cut(s) 261, 802
BmiI GGNNCC 3 cut(s) 262, 331, 804
BmrFI CCNGG 2 cut(s) 738, 787
BmsI GCATC 3 cut(s) 111, 126, 609
BoxI GACNNNNGTC 1 cut(s) 570
BpiI GAAGAC 1 cut(s) 51
Bsa29I ATCGAT 1 cut(s) 294
BsaJI CCNNGG 4 cut(s) 121, 183, 236, 649
BsaXI ACNNNNNCTCC 2 cut(s) 357, 387
Bsc4I CCNNNNNNNGG 1 cut(s) 350
Bse3DI GCAATG 1 cut(s) 468
BseBI CCWGG 2 cut(s) 738, 787
BseCI ATCGAT 1 cut(s) 294
BseDI CCNNGG 4 cut(s) 121, 183, 236, 649
BseGI GGATG 2 cut(s) 117, 706
BseLI CCNNNNNNNGG 1 cut(s) 350
BseMI GCAATG 1 cut(s) 468
BseMII CTCAG 3 cut(s) 98, 533, 589
BseXI GCAGC 2 cut(s) 424, 640
BsgI GTGCAG 2 cut(s) 423, 647
BshVI ATCGAT 1 cut(s) 294
BsiHKAI GWGCWC 1 cut(s) 815
BsiHKCI CYCGRG 1 cut(s) 64
BslFI GGGAC 1 cut(s) 788
BslI CCNNNNNNNGG 1 cut(s) 350
BsmAI GTCTC 2 cut(s) 578, 593
BsmFI GGGAC 1 cut(s) 788
BsmI GAATGC 1 cut(s) 439
BsoBI CYCGRG 1 cut(s) 64
Bsp1286I GDGCHC 1 cut(s) 815
Bsp143I GATC 7 cut(s) 138, 307, 329, 547, 555, 580, 612
BspACI CCGC 3 cut(s) 47, 115, 631
BspCNI CTCAG 3 cut(s) 97, 532, 588
BspDI ATCGAT 1 cut(s) 294
BspHI TCATGA 1 cut(s) 544
BspLI GGNNCC 3 cut(s) 262, 331, 804
BspPI GGATC 4 cut(s) 315, 324, 337, 575
BspQI GCTCTTC 1 cut(s) 248
BsrDI GCAATG 1 cut(s) 468
BssECI CCNNGG 4 cut(s) 121, 183, 236, 649
BssMI GATC 7 cut(s) 138, 307, 329, 547, 555, 580, 612
BssSI CACGAG 1 cut(s) 808
Bst2BI CACGAG 1 cut(s) 808
Bst2UI CCWGG 2 cut(s) 738, 787
Bst4CI ACNGT 4 cut(s) 110, 145, 184, 710
Bst6I CTCTTC 2 cut(s) 58, 248
BstDEI CTNAG 5 cut(s) 84, 156, 474, 519, 575
BstDSI CCRYGG 3 cut(s) 183, 236, 649
BstENI CCTNNNNNAGG 1 cut(s) 348
BstF5I GGATG 2 cut(s) 117, 706
BstH2I RGCGCY 1 cut(s) 72
BstHHI GCGC 1 cut(s) 71
BstKTI GATC 7 cut(s) 141, 310, 332, 550, 558, 583, 615
BstMAI GTCTC 2 cut(s) 578, 593
BstMBI GATC 7 cut(s) 138, 307, 329, 547, 555, 580, 612
BstMWI GCNNNNNNNGC 2 cut(s) 515, 628
BstNI CCWGG 2 cut(s) 738, 787
BstNSI RCATGY 1 cut(s) 488
BstPAI GACNNNNGTC 1 cut(s) 570
BstSCI CCNGG 2 cut(s) 736, 785
BstV1I GCAGC 2 cut(s) 424, 640
BstV2I GAAGAC 1 cut(s) 51
BstX2I RGATCY 3 cut(s) 307, 329, 612
BstYI RGATCY 3 cut(s) 307, 329, 612
Bsu15I ATCGAT 1 cut(s) 294
BsuTUI ATCGAT 1 cut(s) 294
BtgI CCRYGG 3 cut(s) 183, 236, 649
BtsCI GGATG 2 cut(s) 117, 706
BtsI GCAGTG 1 cut(s) 753
BtsIMutI CAGTG 3 cut(s) 179, 583, 753
CciI TCATGA 1 cut(s) 544
CfoI GCGC 1 cut(s) 71
Cfr13I GGNCC 2 cut(s) 261, 802
ClaI ATCGAT 1 cut(s) 294
CsiI ACCWGGT 1 cut(s) 785
CviAII CATG 3 cut(s) 150, 485, 545
CviJI RGCY 7 cut(s) 235, 241, 336, 419, 518, 634, 813
CviKI_1 RGCY 7 cut(s) 235, 241, 336, 419, 518, 634, 813
DdeI CTNAG 5 cut(s) 84, 156, 474, 519, 575
DpnI GATC 7 cut(s) 140, 309, 331, 549, 557, 582, 614
DpnII GATC 7 cut(s) 138, 307, 329, 547, 555, 580, 612
DraI TTTAAA 1 cut(s) 424
DriI GACNNNNNGTC 1 cut(s) 55
Eam1104I CTCTTC 2 cut(s) 58, 248
Eam1105I GACNNNNNGTC 1 cut(s) 55
EarI CTCTTC 2 cut(s) 58, 248
Ecl136II GAGCTC 1 cut(s) 813
Eco24I GRGCYC 1 cut(s) 815
Eco47I GGWCC 2 cut(s) 261, 802
Eco47III AGCGCT 1 cut(s) 70
Eco53kI GAGCTC 1 cut(s) 813
Eco88I CYCGRG 1 cut(s) 64
EcoICRI GAGCTC 1 cut(s) 813
EcoNI CCTNNNNNAGG 1 cut(s) 348
EcoO109I RGGNCCY 1 cut(s) 802
EcoRII CCWGG 2 cut(s) 736, 785
EcoT22I ATGCAT 1 cut(s) 104
EcoT38I GRGCYC 1 cut(s) 815
FaeI CATG 3 cut(s) 153, 488, 548
FaqI GGGAC 1 cut(s) 788
FatI CATG 3 cut(s) 149, 484, 544
FbaI TGATCA 1 cut(s) 138
Fnu4HI GCNGC 4 cut(s) 115, 438, 629, 632
FokI GGATG 2 cut(s) 104, 713
FriOI GRGCYC 1 cut(s) 815
Fsp4HI GCNGC 4 cut(s) 115, 438, 629, 632
FspBI CTAG 2 cut(s) 272, 570
GlaI GCGC 1 cut(s) 70
GluI GCNGC 4 cut(s) 115, 438, 629, 632
HaeII RGCGCY 1 cut(s) 72
HhaI GCGC 1 cut(s) 71
Hin1II CATG 3 cut(s) 153, 488, 548
Hin6I GCGC 1 cut(s) 69
HinP1I GCGC 1 cut(s) 69
HincII GTYRAC 1 cut(s) 376
HindII GTYRAC 1 cut(s) 376
HindIII AAGCTT 1 cut(s) 417
HinfI GANTC 6 cut(s) 50, 160, 197, 268, 678, 844
HphI GGTGA 4 cut(s) 38, 413, 542, 726
Hpy166II GTNNAC 2 cut(s) 376, 706
Hpy188I TCNGA 4 cut(s) 42, 87, 122, 165
Hpy188III TCNNGA 5 cut(s) 226, 272, 545, 616, 760
Hpy8I GTNNAC 2 cut(s) 376, 706
HpyAV CCTTC 2 cut(s) 24, 453
HpyCH4III ACNGT 4 cut(s) 110, 145, 184, 710
HpyCH4IV ACGT 1 cut(s) 503
HpyCH4V TGCA 7 cut(s) 102, 204, 440, 509, 622, 628, 746
HpyF10VI GCNNNNNNNGC 2 cut(s) 515, 628
HpyF3I CTNAG 5 cut(s) 84, 156, 474, 519, 575
HpySE526I ACGT 1 cut(s) 503
Hsp92II CATG 3 cut(s) 153, 488, 548
HspAI GCGC 1 cut(s) 69
Ksp22I TGATCA 1 cut(s) 138
Kzo9I GATC 7 cut(s) 138, 307, 329, 547, 555, 580, 612
LguI GCTCTTC 1 cut(s) 248
Lsp1109I GCAGC 2 cut(s) 424, 640
LweI GCATC 3 cut(s) 111, 126, 609
MabI ACCWGGT 1 cut(s) 785
MaeI CTAG 2 cut(s) 272, 570
MaeII ACGT 1 cut(s) 503
MaeIII GTNAC 3 cut(s) 145, 178, 563
MalI GATC 7 cut(s) 140, 309, 331, 549, 557, 582, 614
MboI GATC 7 cut(s) 138, 307, 329, 547, 555, 580, 612
MboII GAAGA 8 cut(s) 45, 51, 87, 235, 383, 386, 421, 438
MflI RGATCY 3 cut(s) 307, 329, 612
MhlI GDGCHC 1 cut(s) 815
MluCI AATT 3 cut(s) 88, 323, 666
MlyI GAGTC 2 cut(s) 44, 262
MmeI TCCRAC 1 cut(s) 343
MnlI CCTC 4 cut(s) 73, 116, 268, 344
Mph1103I ATGCAT 1 cut(s) 104
MseI TTAA 2 cut(s) 231, 423
MspA1I CMGCKG 1 cut(s) 631
MspR9I CCNGG 2 cut(s) 738, 787
Mva1269I GAATGC 1 cut(s) 439
MvaI CCWGG 2 cut(s) 738, 787
MwoI GCNNNNNNNGC 2 cut(s) 515, 628
NdeII GATC 7 cut(s) 138, 307, 329, 547, 555, 580, 612
NlaIII CATG 3 cut(s) 153, 488, 548
NlaIV GGNNCC 3 cut(s) 262, 331, 804
NmuCI GTSAC 2 cut(s) 145, 563
NsiI ATGCAT 1 cut(s) 104
NspI RCATGY 1 cut(s) 488
PaeR7I CTCGAG 1 cut(s) 64
PagI TCATGA 1 cut(s) 544
PciSI GCTCTTC 1 cut(s) 248
PcsI WCGNNNNNNNCGW 1 cut(s) 62
PctI GAATGC 1 cut(s) 439
PfeI GAWTC 4 cut(s) 160, 197, 678, 844
PflFI GACNNNGTC 1 cut(s) 787
PkrI GCNGC 4 cut(s) 116, 439, 630, 633
PleI GAGTC 2 cut(s) 44, 262
PpsI GAGTC 2 cut(s) 44, 262
PpuMI RGGWCCY 1 cut(s) 802
PshAI GACNNNNGTC 1 cut(s) 570
Psp124BI GAGCTC 1 cut(s) 815
Psp1406I AACGTT 1 cut(s) 503
Psp5II RGGWCCY 1 cut(s) 802
Psp6I CCWGG 2 cut(s) 736, 785
PspGI CCWGG 2 cut(s) 736, 785
PspN4I GGNNCC 3 cut(s) 262, 331, 804
PspPI GGNCC 2 cut(s) 261, 802
PspPPI RGGWCCY 1 cut(s) 802
PspXI VCTCGAGB 1 cut(s) 64
PsuI RGATCY 3 cut(s) 307, 329, 612
PsyI GACNNNGTC 1 cut(s) 787
SacI GAGCTC 1 cut(s) 815
SapI GCTCTTC 1 cut(s) 248
SaqAI TTAA 2 cut(s) 231, 423
SatI GCNGC 4 cut(s) 115, 438, 629, 632
Sau3AI GATC 7 cut(s) 138, 307, 329, 547, 555, 580, 612
Sau96I GGNCC 2 cut(s) 261, 802
SchI GAGTC 2 cut(s) 44, 262
ScrFI CCNGG 2 cut(s) 738, 787
SduI GDGCHC 1 cut(s) 815
SexAI ACCWGGT 1 cut(s) 785
SfaNI GCATC 3 cut(s) 111, 126, 609
Sfr274I CTCGAG 1 cut(s) 64
SinI GGWCC 2 cut(s) 261, 802
SlaI CTCGAG 1 cut(s) 64
SmlI CTYRAG 1 cut(s) 64
SmoI CTYRAG 1 cut(s) 64
SpeI ACTAGT 1 cut(s) 569
Sse9I AATT 3 cut(s) 88, 323, 666
SsiI CCGC 3 cut(s) 47, 115, 631
SspMI CTAG 2 cut(s) 272, 570
SstI GAGCTC 1 cut(s) 815
StyD4I CCNGG 2 cut(s) 736, 785
TaaI ACNGT 4 cut(s) 110, 145, 184, 710
TaiI ACGT 1 cut(s) 506
TaqI TCGA 5 cut(s) 65, 225, 294, 558, 603
TasI AATT 3 cut(s) 88, 323, 666
TauI GCSGC 2 cut(s) 117, 634
TfiI GAWTC 4 cut(s) 160, 197, 678, 844
Tru1I TTAA 2 cut(s) 231, 423
Tru9I TTAA 2 cut(s) 231, 423
TscAI CASTG 3 cut(s) 179, 583, 753
TseFI GTSAC 2 cut(s) 145, 563
TseI GCWGC 2 cut(s) 437, 628
Tsp45I GTSAC 2 cut(s) 145, 563
TspDTI ATGAA 5 cut(s) 422, 438, 457, 626, 828
TspGWI ACGGA 1 cut(s) 638
TspRI CASTG 3 cut(s) 179, 583, 753
Tth111I GACNNNGTC 1 cut(s) 787
VpaK11BI GGWCC 2 cut(s) 261, 802
XagI CCTNNNNNAGG 1 cut(s) 348
XapI RAATTY 2 cut(s) 88, 323
XbaI TCTAGA 1 cut(s) 271
XceI RCATGY 1 cut(s) 488
XhoI CTCGAG 1 cut(s) 64
XspI CTAG 2 cut(s) 272, 570
Zsp2I ATGCAT 1 cut(s) 104
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.