Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0004954

Physical Location & Seq

Genomic Coordinates Forward (+)

29426188 .. 29429507

Gene Structure 3320 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G340400.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGAGAGATTTCCCATCTTGTTTTGGTGAAAATGGGGTTCAAGTTGCTGATTCTTCTTCATCAAATACTAGTAGGACTGCCCAGAATTTGGTTACTTGTGTCTATCAATGCCGGTTACGAGGCAGGTCTTGCTTGATTACTGTAACTTGGAGTAAGAATTTGATGGGTCAAGGGCTTAGTGTTGGGATAGATGATTCGTCAAATCAGTGTCTTTGTAAGGTTGATATTAAGCCCTGGTTGTTCTCCAAGAGAAGAGGGTTCAAGAGTTTGGAAGCTTATTCTAGTAAAATTGACATATATTGGGACCTTTCTTCGGCGAAATTCGGATCCGGGCCTGAACCTTTAGGGGGATATTATGTGGGAGTTGTGGTGGACCGGCAAATGCTTCTCCTTCTTGGAGATATGAGAAAAGAAGCTTTCAAAAAGACTAGTGCCAGCCCTGTGCCTTCTAATGCTGTTTGTGTTGCCAAGAGAGAGCATGTTTTTGGAAAAAGGGGCTTCACCACAAAGGCTCAATTTTCTAATAATGGTCAAGTGCATGATCTTGTCATTGAATGTGATACTCTTGGGGTCAATGACCCGTGCCTCCTGGTCCGTGTAGACAGCAAGCCTGTGATGCAGGTGAAGAGACTACGGTGGAAGTTCCGGGGGAATCATACCATCTTGGTTGATGGGCTTGCAGTTGAAGTTTTCTGGGATGTTCACAACTGGCTCTTTGGTACATCACCCGGAAATGCTGTTTTTATGTTCAAGACATGCCTCTCAGCTGAGAAGTTGTGGGCTAGCCAACCGCTCTCTGATCCAAGTGCGTTGCAGTGGTCATTTTCACAGAGATTTTCAGATAGTAAGTCGCAGGGTCTAGGATTCTCACTGATTCTGTACGCTTGGAAGAATGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF868

Protein Analysis

300

Amino Acids

33.36

Weight (kDa)

9.14

Isoelectric Point (pI)

36.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004954)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04860 AT5G28150
fragaria_vesca	FvH4_6g03410 FvH4_6g03410 FvH4_6g03410 FvH4_6g03410
malus_domestica	MD04G1221100.v1.1 MD12G1237400.v1.1
prunus_persica	Prupe.6G340400_v2.0.a1 Prupe.6G340400_v2.0.a1 Prupe.6G340400_v2.0.a1 Prupe.6G340400_v2.0.a1 Prupe.6G340400_v2.0.a1 Prupe.6G340400_v2.0.a1 Prupe.6G340400_v2.0.a1
pyrus_communis	pycom04g19560 pycom12g21830
rosa_chinensis	RchiOBHm_Chr3g0451901
rosa_laevigata	RLG00000025639
rosa_multiflora	Rmu_sc0002901.1_g000005
rosa_roxburghii	Rroxscaffold_164G00436220 Rroxscaffold_6G00429070
rosa_rugosa	Rorug02G0636900 Rorug02G0637000 Rorug02G0637100
rosa_samantha	Rh3AG038900 Rh3BG040200 Rh3CG038700 Rh3DG039500
rosa_wichuraiana	Rw3G002910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	610
Acc36I	ACCTGC	2 cut(s)	114, 610
AccB7I	CCANNNNNTGG	1 cut(s)	88
AccBSI	CCGCTC	1 cut(s)	793
AccI	GTMKAC	1 cut(s)	600
AciI	CCGC	1 cut(s)	791
AclWI	GGATC	3 cut(s)	321, 334, 794
AcsI	RAATTY	3 cut(s)	85, 157, 320
AfaI	GTAC	2 cut(s)	721, 881
AfiI	CCNNNNNNNGG	3 cut(s)	88, 313, 347
AgsI	TTSAA	6 cut(s)	41, 262, 421, 554, 686, 751
AhlI	ACTAGT	2 cut(s)	68, 428
AjnI	CCWGG	2 cut(s)	233, 588
AluBI	AGCT	3 cut(s)	275, 416, 767
AluI	AGCT	3 cut(s)	275, 416, 767
Alw26I	GTCTC	1 cut(s)	622
AlwI	GGATC	3 cut(s)	321, 334, 794
AoxI	GGCC	1 cut(s)	332
ApoI	RAATTY	3 cut(s)	85, 157, 320
AspS9I	GGNCC	4 cut(s)	304, 332, 373, 592
AsuC2I	CCSGG	3 cut(s)	331, 647, 729
AsuHPI	GGTGA	4 cut(s)	38, 493, 634, 717
AsuNHI	GCTAGC	1 cut(s)	782
AvaII	GGWCC	3 cut(s)	304, 373, 592
BamHI	GGATCC	1 cut(s)	326
BccI	CCATC	4 cut(s)	22, 157, 665, 668
BciT130I	CCWGG	2 cut(s)	235, 590
BcnI	CCSGG	3 cut(s)	331, 647, 729
BcoDI	GTCTC	1 cut(s)	622
BcuI	ACTAGT	2 cut(s)	68, 428
BfaI	CTAG	5 cut(s)	69, 282, 429, 783, 860
BfuAI	ACCTGC	2 cut(s)	114, 610
Bme1390I	CCNGG	5 cut(s)	235, 331, 590, 647, 729
Bme18I	GGWCC	3 cut(s)	304, 373, 592
BmgT120I	GGNCC	4 cut(s)	304, 332, 373, 592
BmiI	GGNNCC	2 cut(s)	305, 328
BmrFI	CCNGG	5 cut(s)	235, 331, 590, 647, 729
BmsI	GCATC	1 cut(s)	606
BmtI	GCTAGC	1 cut(s)	786
BpuMI	CCSGG	3 cut(s)	331, 647, 729
BsaJI	CCNNGG	2 cut(s)	233, 646
BsaXI	ACNNNNNCTCC	2 cut(s)	354, 384
Bsc4I	CCNNNNNNNGG	3 cut(s)	88, 313, 347
Bse118I	RCCGGY	2 cut(s)	111, 375
Bse1I	ACTGG	1 cut(s)	713
BseBI	CCWGG	2 cut(s)	235, 590
BseDI	CCNNGG	2 cut(s)	233, 646
BseGI	GGATG	1 cut(s)	703
BseLI	CCNNNNNNNGG	3 cut(s)	88, 313, 347
BseMII	CTCAG	2 cut(s)	759, 777
BseNI	ACTGG	1 cut(s)	713
BshFI	GGCC	1 cut(s)	334
BsiSI	CCGG	5 cut(s)	112, 330, 376, 646, 729
BslFI	GGGAC	1 cut(s)	317
BslI	CCNNNNNNNGG	3 cut(s)	88, 313, 347
BsmAI	GTCTC	1 cut(s)	622
BsmFI	GGGAC	1 cut(s)	317
BsnI	GGCC	1 cut(s)	334
Bsp143I	GATC	3 cut(s)	326, 541, 799
BspACI	CCGC	1 cut(s)	791
BspANI	GGCC	1 cut(s)	334
BspCNI	CTCAG	2 cut(s)	760, 776
BspLI	GGNNCC	2 cut(s)	305, 328
BspMI	ACCTGC	2 cut(s)	114, 610
BspOI	GCTAGC	1 cut(s)	786
BspPI	GGATC	3 cut(s)	321, 334, 794
BsrBI	CCGCTC	1 cut(s)	793
BsrFI	RCCGGY	2 cut(s)	111, 375
BsrI	ACTGG	1 cut(s)	713
BssAI	RCCGGY	2 cut(s)	111, 375
BssECI	CCNNGG	2 cut(s)	233, 646
BssMI	GATC	3 cut(s)	326, 541, 799
Bst2UI	CCWGG	2 cut(s)	235, 590
Bst4CI	ACNGT	2 cut(s)	142, 636
Bst6I	CTCTTC	2 cut(s)	247, 620
BstAPI	GCANNNNNTGC	1 cut(s)	129
BstC8I	GCNNGC	4 cut(s)	436, 608, 678, 784
BstDEI	CTNAG	3 cut(s)	176, 763, 768
BstF5I	GGATG	1 cut(s)	703
BstKTI	GATC	3 cut(s)	329, 544, 802
BstMAI	GTCTC	1 cut(s)	622
BstMBI	GATC	3 cut(s)	326, 541, 799
BstMWI	GCNNNNNNNGC	2 cut(s)	129, 616
BstNI	CCWGG	2 cut(s)	235, 590
BstNSI	RCATGY	2 cut(s)	482, 759
BstSCI	CCNGG	5 cut(s)	233, 329, 588, 645, 727
BstX2I	RGATCY	1 cut(s)	326
BstYI	RGATCY	1 cut(s)	326
BsuRI	GGCC	1 cut(s)	334
BtsCI	GGATG	1 cut(s)	703
BtsI	GCAGTG	1 cut(s)	821
BtsIMutI	CAGTG	3 cut(s)	212, 821, 869
BveI	ACCTGC	2 cut(s)	114, 610
Cac8I	GCNNGC	4 cut(s)	436, 608, 678, 784
Cfr10I	RCCGGY	2 cut(s)	111, 375
Cfr13I	GGNCC	4 cut(s)	304, 332, 373, 592
Csp6I	GTAC	2 cut(s)	720, 880
CviAII	CATG	3 cut(s)	479, 539, 756
CviQI	GTAC	2 cut(s)	720, 880
DdeI	CTNAG	3 cut(s)	176, 763, 768
DpnI	GATC	3 cut(s)	328, 543, 801
DpnII	GATC	3 cut(s)	326, 541, 799
Eam1104I	CTCTTC	2 cut(s)	247, 620
EarI	CTCTTC	2 cut(s)	247, 620
Eco47I	GGWCC	3 cut(s)	304, 373, 592
EcoO109I	RGGNCCY	1 cut(s)	304
EcoRII	CCWGG	2 cut(s)	233, 588
FaeI	CATG	3 cut(s)	482, 542, 759
FaiI	YATR	9 cut(s)	296, 298, 357, 404, 480, 540, 657, 746, 757
FaqI	GGGAC	1 cut(s)	317
FatI	CATG	3 cut(s)	478, 538, 755
FblI	GTMKAC	1 cut(s)	600
FokI	GGATG	1 cut(s)	710
FspBI	CTAG	5 cut(s)	69, 282, 429, 783, 860
HaeIII	GGCC	1 cut(s)	334
HapII	CCGG	5 cut(s)	112, 330, 376, 646, 729
Hin1II	CATG	3 cut(s)	482, 542, 759
HindIII	AAGCTT	2 cut(s)	273, 414
HinfI	GANTC	5 cut(s)	50, 194, 652, 864, 874
HpaII	CCGG	5 cut(s)	112, 330, 376, 646, 729
HphI	GGTGA	4 cut(s)	38, 493, 634, 717
Hpy166II	GTNNAC	3 cut(s)	373, 601, 703
Hpy188I	TCNGA	3 cut(s)	326, 799, 841
Hpy188III	TCNNGA	2 cut(s)	262, 751
Hpy8I	GTNNAC	3 cut(s)	373, 601, 703
HpyAV	CCTTC	2 cut(s)	401, 456
HpyCH4III	ACNGT	2 cut(s)	142, 636
HpyCH4V	TGCA	4 cut(s)	538, 619, 680, 814
HpyF10VI	GCNNNNNNNGC	2 cut(s)	129, 616
HpyF3I	CTNAG	3 cut(s)	176, 763, 768
Hsp92II	CATG	3 cut(s)	482, 542, 759
Kzo9I	GATC	3 cut(s)	326, 541, 799
LweI	GCATC	1 cut(s)	606
MaeI	CTAG	5 cut(s)	69, 282, 429, 783, 860
MaeIII	GTNAC	3 cut(s)	91, 114, 142
MalI	GATC	3 cut(s)	328, 543, 801
MbiI	CCGCTC	1 cut(s)	793
MboI	GATC	3 cut(s)	326, 541, 799
MboII	GAAGA	5 cut(s)	45, 48, 264, 303, 637
MflI	RGATCY	1 cut(s)	326
MluCI	AATT	5 cut(s)	85, 157, 288, 320, 515
MnlI	CCTC	4 cut(s)	113, 248, 596, 770
MseI	TTAA	1 cut(s)	228
MspA1I	CMGCKG	1 cut(s)	767
MspI	CCGG	5 cut(s)	112, 330, 376, 646, 729
MspR9I	CCNGG	5 cut(s)	235, 331, 590, 647, 729
MvaI	CCWGG	2 cut(s)	235, 590
MwoI	GCNNNNNNNGC	2 cut(s)	129, 616
NciI	CCSGG	3 cut(s)	331, 647, 729
NdeII	GATC	3 cut(s)	326, 541, 799
NheI	GCTAGC	1 cut(s)	782
NlaIII	CATG	3 cut(s)	482, 542, 759
NlaIV	GGNNCC	2 cut(s)	305, 328
NspI	RCATGY	2 cut(s)	482, 759
PaqCI	CACCTGC	1 cut(s)	610
PfeI	GAWTC	5 cut(s)	50, 194, 652, 864, 874
PflMI	CCANNNNNTGG	1 cut(s)	88
PpuMI	RGGWCCY	1 cut(s)	304
Psp5II	RGGWCCY	1 cut(s)	304
Psp6I	CCWGG	2 cut(s)	233, 588
PspGI	CCWGG	2 cut(s)	233, 588
PspN4I	GGNNCC	2 cut(s)	305, 328
PspPI	GGNCC	4 cut(s)	304, 332, 373, 592
PspPPI	RGGWCCY	1 cut(s)	304
PsuI	RGATCY	1 cut(s)	326
PvuII	CAGCTG	1 cut(s)	767
RsaI	GTAC	2 cut(s)	721, 881
RsaNI	GTAC	2 cut(s)	720, 880
SaqAI	TTAA	1 cut(s)	228
Sau3AI	GATC	3 cut(s)	326, 541, 799
Sau96I	GGNCC	4 cut(s)	304, 332, 373, 592
ScrFI	CCNGG	5 cut(s)	235, 331, 590, 647, 729
SetI	ASST	8 cut(s)	128, 222, 277, 309, 343, 418, 624, 769
SfaNI	GCATC	1 cut(s)	606
SinI	GGWCC	3 cut(s)	304, 373, 592
SpeI	ACTAGT	2 cut(s)	68, 428
Sse9I	AATT	5 cut(s)	85, 157, 288, 320, 515
SsiI	CCGC	1 cut(s)	791
SspMI	CTAG	5 cut(s)	69, 282, 429, 783, 860
StyD4I	CCNGG	5 cut(s)	233, 329, 588, 645, 727
TaaI	ACNGT	2 cut(s)	142, 636
TasI	AATT	5 cut(s)	85, 157, 288, 320, 515
TfiI	GAWTC	5 cut(s)	50, 194, 652, 864, 874
Tru1I	TTAA	1 cut(s)	228
Tru9I	TTAA	1 cut(s)	228
TscAI	CASTG	3 cut(s)	212, 821, 876
TspDTI	ATGAA	1 cut(s)	48
TspGWI	ACGGA	1 cut(s)	584
TspRI	CASTG	3 cut(s)	212, 821, 876
Van91I	CCANNNNNTGG	1 cut(s)	88
VpaK11BI	GGWCC	3 cut(s)	304, 373, 592
XapI	RAATTY	3 cut(s)	85, 157, 320
XceI	RCATGY	2 cut(s)	482, 759
XmiI	GTMKAC	1 cut(s)	600
XspI	CTAG	5 cut(s)	69, 282, 429, 783, 860

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.