Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0004954

Physical Location & Seq

Genomic Coordinates Forward (+)

75031866 .. 75032989

Gene Structure 1124 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0636900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGCGTGGAGCTAGCAGGACTAACCATGAAAACCAAAACCCATCTGGCTCTGCTTCACCTACTTGTAATCCTCTCGATTATGATTACGATACCAAAACTGGCCAGACCTTTCCCGTCGACCCTCATCTTTGTTGTAACAAAAGCCCATCTCGGTCGGGTTCAACCTCGTTCAATCCTCTTAACTTTGCTCAAAACCAATATCATGATGACATCAGAATTATCCAGTCCTGCAGTGGCCTCTTCCTGTGTCGTCTTTTTCATTCTGAAAATGTAAACCCCCCATATTTTATTCTCAATCCTACAATCAATCAGTTCCACACACTTATTCCTCCTCCAGCTACTCTTGTTACCACCGCTACCGGTGGTCTGTCTTCGGATCCATCAACCATTGATGGATCCGAAGATGGCACTATCTATCACATAGTGATATATTCATCTGAGACTCAAAGTTGGAGGCTTCTTGATTCTTTTATTGAGAGGGTATTTAGCATCCGTTATCATGAACGCATGCTATACTGGAATGGAGCAATTAATTGGTTAGGCGTGTATGGTGAGGTAGCATACTTTCACATAGATGAAGATCGTGACTATTTTATTGATAATCCTCCTCACCTTTACGAAAAGGACATTTGCAAGAGGAAATCTAGATACTTTCGGGAGTCTGGTGATGGGCGCCATTTGCATCTTATTGATCTTTTTCGGCCCTGTCTTACTAAATTTGAAGTGTTGGAGATGGGAAGAGACTACTCTGGCTGGTTTGTCAAGTACCATGTTGATCTTGATCCCTTGTGCACTTCTTTCCCGCTCTTTGCTTATGGACAATTTGTTGTTCTCATTCTTGGTCAAGACAAAAATGAGGAAGAGGAAAGTTCGTCTCTGTTGCTGCATACTCCTGGTAACCTAATTTCTTATAATCTTGAGAGCAAGACCTTCAAATCTATTGAGTTAACTCCCAAGGCCGGAGTTGATGATTCTCTCTTACGAGTTGACGCAGATTATTATCCTGAAGCGTCTAATTATCCATATATGGAGACTTTGGCCTGTGTGATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF868

Protein Analysis

350

Amino Acids

40.0

Weight (kDa)

5.11

Isoelectric Point (pI)

43.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004954)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04860 AT5G28150
fragaria_vesca	FvH4_6g03410 FvH4_6g03410 FvH4_6g03410 FvH4_6g03410
malus_domestica	MD04G1221100.v1.1 MD12G1237400.v1.1
prunus_persica	Prupe.6G340400_v2.0.a1 Prupe.6G340400_v2.0.a1 Prupe.6G340400_v2.0.a1 Prupe.6G340400_v2.0.a1 Prupe.6G340400_v2.0.a1 Prupe.6G340400_v2.0.a1 Prupe.6G340400_v2.0.a1
pyrus_communis	pycom04g19560 pycom12g21830
rosa_chinensis	RchiOBHm_Chr3g0451901
rosa_laevigata	RLG00000025639
rosa_multiflora	Rmu_sc0002901.1_g000005
rosa_roxburghii	Rroxscaffold_164G00436220 Rroxscaffold_6G00429070
rosa_rugosa	Rorug02G0636900 Rorug02G0637000 Rorug02G0637100
rosa_samantha	Rh3AG038900 Rh3BG040200 Rh3CG038700 Rh3DG039500
rosa_wichuraiana	Rw3G002910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	912
AccB1I	GGYRCC	1 cut(s)	672
AccBSI	CCGCTC	1 cut(s)	805
AccI	GTMKAC	1 cut(s)	117
AciI	CCGC	2 cut(s)	354, 803
AclWI	GGATC	5 cut(s)	371, 384, 390, 403, 776
AcoI	YGGCCR	1 cut(s)	100
AcsI	RAATTY	1 cut(s)	716
AcuI	CTGAAG	1 cut(s)	1026
AcyI	GRCGYC	1 cut(s)	673
AdeI	CACNNNGTG	1 cut(s)	424
AfaI	GTAC	1 cut(s)	767
AfiI	CCNNNNNNNGG	1 cut(s)	959
AgeI	ACCGGT	1 cut(s)	359
AgsI	TTSAA	4 cut(s)	162, 172, 722, 934
AjnI	CCWGG	1 cut(s)	892
AluBI	AGCT	2 cut(s)	11, 338
AluI	AGCT	2 cut(s)	11, 338
Alw21I	GWGCWC	1 cut(s)	794
Alw26I	GTCTC	4 cut(s)	434, 735, 879, 1025
Alw44I	GTGCAC	1 cut(s)	790
AlwI	GGATC	5 cut(s)	371, 384, 390, 403, 776
AoxI	GGCC	5 cut(s)	100, 235, 701, 957, 1038
ApaLI	GTGCAC	1 cut(s)	790
ApeKI	GCWGC	1 cut(s)	883
ApoI	RAATTY	1 cut(s)	716
AseI	ATTAAT	1 cut(s)	531
AsiGI	ACCGGT	1 cut(s)	359
AspLEI	GCGC	1 cut(s)	675
AspS9I	GGNCC	1 cut(s)	702
AsuHPI	GGTGA	4 cut(s)	48, 563, 602, 677
AsuNHI	GCTAGC	1 cut(s)	11
BaeGI	GKGCMC	1 cut(s)	794
BalI	TGGCCA	1 cut(s)	102
BamHI	GGATCC	2 cut(s)	376, 395
BanI	GGYRCC	1 cut(s)	672
BbsI	GAAGAC	1 cut(s)	363
Bbv12I	GWGCWC	1 cut(s)	794
BbvI	GCAGC	1 cut(s)	870
BccI	CCATC	7 cut(s)	49, 154, 386, 388, 398, 662, 727
BciT130I	CCWGG	1 cut(s)	894
BcoDI	GTCTC	4 cut(s)	434, 735, 879, 1025
BfaI	CTAG	2 cut(s)	12, 645
BfmI	CTRYAG	1 cut(s)	229
BfoI	RGCGCY	1 cut(s)	676
BisI	GCNGC	1 cut(s)	884
BlsI	GCNGC	1 cut(s)	885
Bme1390I	CCNGG	1 cut(s)	894
BmgT120I	GGNCC	1 cut(s)	702
BmiI	GGNNCC	3 cut(s)	378, 397, 674
BmrFI	CCNGG	1 cut(s)	894
BmsI	GCATC	2 cut(s)	498, 691
BmtI	GCTAGC	1 cut(s)	15
BpiI	GAAGAC	1 cut(s)	363
BpmI	CTGGAG	1 cut(s)	318
BpuEI	CTTGAG	1 cut(s)	938
BsaBI	GATNNNNATC	3 cut(s)	579, 780, 999
BsaHI	GRCGYC	1 cut(s)	673
BsaJI	CCNNGG	1 cut(s)	954
BsaWI	WCCGGW	1 cut(s)	359
Bsc4I	CCNNNNNNNGG	1 cut(s)	959
Bse118I	RCCGGY	1 cut(s)	359
Bse1I	ACTGG	3 cut(s)	103, 223, 521
Bse8I	GATNNNNATC	3 cut(s)	579, 780, 999
BseBI	CCWGG	1 cut(s)	894
BseDI	CCNNGG	1 cut(s)	954
BseGI	GGATG	1 cut(s)	489
BseJI	GATNNNNATC	3 cut(s)	579, 780, 999
BseLI	CCNNNNNNNGG	1 cut(s)	959
BseMII	CTCAG	1 cut(s)	429
BseNI	ACTGG	3 cut(s)	103, 223, 521
BseRI	GAGGAG	2 cut(s)	321, 597
BseSI	GKGCMC	1 cut(s)	794
BseXI	GCAGC	1 cut(s)	870
Bsh1285I	CGRYCG	1 cut(s)	155
BshFI	GGCC	5 cut(s)	102, 237, 703, 959, 1040
BshNI	GGYRCC	1 cut(s)	672
BshTI	ACCGGT	1 cut(s)	359
BsiEI	CGRYCG	1 cut(s)	155
BsiHKAI	GWGCWC	1 cut(s)	794
BsiSI	CCGG	2 cut(s)	360, 960
BslI	CCNNNNNNNGG	1 cut(s)	959
BsmAI	GTCTC	4 cut(s)	434, 735, 879, 1025
BsmBI	CGTCTC	1 cut(s)	879
BsnI	GGCC	5 cut(s)	102, 237, 703, 959, 1040
Bsp1286I	GDGCHC	1 cut(s)	794
Bsp143I	GATC	6 cut(s)	376, 395, 580, 691, 775, 781
BspACI	CCGC	2 cut(s)	354, 803
BspANI	GGCC	5 cut(s)	102, 237, 703, 959, 1040
BspCNI	CTCAG	1 cut(s)	430
BspHI	TCATGA	2 cut(s)	202, 499
BspLI	GGNNCC	3 cut(s)	378, 397, 674
BspMAI	CTGCAG	1 cut(s)	233
BspOI	GCTAGC	1 cut(s)	15
BspPI	GGATC	5 cut(s)	371, 384, 390, 403, 776
BspT107I	GGYRCC	1 cut(s)	672
BsrBI	CCGCTC	1 cut(s)	805
BsrFI	RCCGGY	1 cut(s)	359
BsrI	ACTGG	3 cut(s)	103, 223, 521
BssAI	RCCGGY	1 cut(s)	359
BssECI	CCNNGG	1 cut(s)	954
BssMI	GATC	6 cut(s)	376, 395, 580, 691, 775, 781
BssNI	GRCGYC	1 cut(s)	673
BssT1I	CCWWGG	1 cut(s)	954
Bst2UI	CCWGG	1 cut(s)	894
Bst6I	CTCTTC	3 cut(s)	245, 733, 855
BstACI	GRCGYC	1 cut(s)	673
BstC8I	GCNNGC	2 cut(s)	13, 509
BstDEI	CTNAG	1 cut(s)	438
BstEII	GGTNACC	1 cut(s)	896
BstF5I	GGATG	1 cut(s)	489
BstH2I	RGCGCY	1 cut(s)	676
BstHHI	GCGC	1 cut(s)	675
BstKTI	GATC	6 cut(s)	379, 398, 583, 694, 778, 784
BstMAI	GTCTC	4 cut(s)	434, 735, 879, 1025
BstMBI	GATC	6 cut(s)	376, 395, 580, 691, 775, 781
BstMCI	CGRYCG	1 cut(s)	155
BstMWI	GCNNNNNNNGC	1 cut(s)	679
BstNI	CCWGG	1 cut(s)	894
BstNSI	RCATGY	1 cut(s)	511
BstPI	GGTNACC	1 cut(s)	896
BstSCI	CCNGG	1 cut(s)	892
BstSFI	CTRYAG	1 cut(s)	229
BstSLI	GKGCMC	1 cut(s)	794
BstV1I	GCAGC	1 cut(s)	870
BstV2I	GAAGAC	1 cut(s)	363
BstX2I	RGATCY	2 cut(s)	376, 395
BstYI	RGATCY	2 cut(s)	376, 395
BsuRI	GGCC	5 cut(s)	102, 237, 703, 959, 1040
BtsCI	GGATG	1 cut(s)	489
BtsI	GCAGTG	1 cut(s)	238
BtsIMutI	CAGTG	1 cut(s)	238
Cac8I	GCNNGC	2 cut(s)	13, 509
CciI	TCATGA	2 cut(s)	202, 499
CfoI	GCGC	1 cut(s)	675
Cfr10I	RCCGGY	1 cut(s)	359
Cfr13I	GGNCC	1 cut(s)	702
CseI	GACGC	2 cut(s)	998, 999
Csp6I	GTAC	1 cut(s)	766
CspAI	ACCGGT	1 cut(s)	359
CviAII	CATG	5 cut(s)	26, 203, 500, 508, 770
CviQI	GTAC	1 cut(s)	766
DdeI	CTNAG	1 cut(s)	438
DinI	GGCGCC	1 cut(s)	674
DpnI	GATC	6 cut(s)	378, 397, 582, 693, 777, 783
DpnII	GATC	6 cut(s)	376, 395, 580, 691, 775, 781
DraIII	CACNNNGTG	1 cut(s)	424
EaeI	YGGCCR	1 cut(s)	100
Eam1104I	CTCTTC	3 cut(s)	245, 733, 855
EarI	CTCTTC	3 cut(s)	245, 733, 855
Eco130I	CCWWGG	1 cut(s)	954
Eco57I	CTGAAG	1 cut(s)	1026
Eco91I	GGTNACC	1 cut(s)	896
EcoO65I	GGTNACC	1 cut(s)	896
EcoRII	CCWGG	1 cut(s)	892
EcoT14I	CCWWGG	1 cut(s)	954
EgeI	GGCGCC	1 cut(s)	674
EheI	GGCGCC	1 cut(s)	674
ErhI	CCWWGG	1 cut(s)	954
Esp3I	CGTCTC	1 cut(s)	879
FaeI	CATG	5 cut(s)	29, 206, 503, 511, 773
FatI	CATG	5 cut(s)	25, 202, 499, 507, 769
FauI	CCCGC	1 cut(s)	810
FblI	GTMKAC	1 cut(s)	117
Fnu4HI	GCNGC	1 cut(s)	884
FokI	GGATG	1 cut(s)	476
Fsp4HI	GCNGC	1 cut(s)	884
FspBI	CTAG	2 cut(s)	12, 645
GlaI	GCGC	1 cut(s)	674
GluI	GCNGC	1 cut(s)	884
GsuI	CTGGAG	1 cut(s)	318
HaeII	RGCGCY	1 cut(s)	676
HaeIII	GGCC	5 cut(s)	102, 237, 703, 959, 1040
HapII	CCGG	2 cut(s)	360, 960
HgaI	GACGC	2 cut(s)	998, 999
HhaI	GCGC	1 cut(s)	675
Hin1I	GRCGYC	1 cut(s)	673
Hin1II	CATG	5 cut(s)	29, 206, 503, 511, 773
Hin6I	GCGC	1 cut(s)	673
HinP1I	GCGC	1 cut(s)	673
HincII	GTYRAC	3 cut(s)	118, 948, 988
HindII	GTYRAC	3 cut(s)	118, 948, 988
HinfI	GANTC	4 cut(s)	442, 464, 659, 971
HpaI	GTTAAC	1 cut(s)	948
HpaII	CCGG	2 cut(s)	360, 960
HphI	GGTGA	4 cut(s)	48, 563, 602, 677
Hpy166II	GTNNAC	5 cut(s)	118, 274, 792, 948, 988
Hpy188I	TCNGA	5 cut(s)	215, 265, 376, 400, 439
Hpy8I	GTNNAC	5 cut(s)	118, 274, 792, 948, 988
Hpy99I	CGWCG	1 cut(s)	119
HpyAV	CCTTC	1 cut(s)	940
HpyCH4V	TGCA	5 cut(s)	231, 633, 682, 792, 886
HpyF10VI	GCNNNNNNNGC	1 cut(s)	679
HpyF3I	CTNAG	1 cut(s)	438
Hsp92I	GRCGYC	1 cut(s)	673
Hsp92II	CATG	5 cut(s)	29, 206, 503, 511, 773
HspAI	GCGC	1 cut(s)	673
KasI	GGCGCC	1 cut(s)	672
KspAI	GTTAAC	1 cut(s)	948
Kzo9I	GATC	6 cut(s)	376, 395, 580, 691, 775, 781
LmnI	GCTCC	2 cut(s)	8, 524
Lsp1109I	GCAGC	1 cut(s)	870
LweI	GCATC	2 cut(s)	498, 691
MaeI	CTAG	2 cut(s)	12, 645
MaeIII	GTNAC	4 cut(s)	134, 346, 584, 896
MalI	GATC	6 cut(s)	378, 397, 582, 693, 777, 783
MbiI	CCGCTC	1 cut(s)	805
MboI	GATC	6 cut(s)	376, 395, 580, 691, 775, 781
MboII	GAAGA	6 cut(s)	232, 363, 413, 590, 750, 872
MflI	RGATCY	2 cut(s)	376, 395
MhlI	GDGCHC	1 cut(s)	794
MlsI	TGGCCA	1 cut(s)	102
MluCI	AATT	7 cut(s)	216, 528, 532, 716, 821, 903, 1015
MluNI	TGGCCA	1 cut(s)	102
Mly113I	GGCGCC	1 cut(s)	673
MlyI	GAGTC	2 cut(s)	436, 668
MmeI	TCCRAC	2 cut(s)	431, 708
Mox20I	TGGCCA	1 cut(s)	102
MscI	TGGCCA	1 cut(s)	102
MseI	TTAA	3 cut(s)	180, 531, 947
MslI	CAYNNNNRTG	1 cut(s)	573
Msp20I	TGGCCA	1 cut(s)	102
MspI	CCGG	2 cut(s)	360, 960
MspR9I	CCNGG	1 cut(s)	894
MvaI	CCWGG	1 cut(s)	894
MwoI	GCNNNNNNNGC	1 cut(s)	679
NarI	GGCGCC	1 cut(s)	673
NdeII	GATC	6 cut(s)	376, 395, 580, 691, 775, 781
NheI	GCTAGC	1 cut(s)	11
NlaIII	CATG	5 cut(s)	29, 206, 503, 511, 773
NlaIV	GGNNCC	3 cut(s)	378, 397, 674
NmuCI	GTSAC	1 cut(s)	584
NspI	RCATGY	1 cut(s)	511
PaeI	GCATGC	1 cut(s)	511
PagI	TCATGA	2 cut(s)	202, 499
PfeI	GAWTC	2 cut(s)	464, 971
PinAI	ACCGGT	1 cut(s)	359
PkrI	GCNGC	1 cut(s)	885
PleI	GAGTC	2 cut(s)	436, 667
PluTI	GGCGCC	1 cut(s)	676
PpsI	GAGTC	2 cut(s)	436, 667
PshBI	ATTAAT	1 cut(s)	531
PsiI	TTATAA	1 cut(s)	912
Psp6I	CCWGG	1 cut(s)	892
PspEI	GGTNACC	1 cut(s)	896
PspGI	CCWGG	1 cut(s)	892
PspN4I	GGNNCC	3 cut(s)	378, 397, 674
PspPI	GGNCC	1 cut(s)	702
PstI	CTGCAG	1 cut(s)	233
PsuI	RGATCY	2 cut(s)	376, 395
RsaI	GTAC	1 cut(s)	767
RsaNI	GTAC	1 cut(s)	766
RseI	CAYNNNNRTG	1 cut(s)	573
SalI	GTCGAC	1 cut(s)	116
SaqAI	TTAA	3 cut(s)	180, 531, 947
SatI	GCNGC	1 cut(s)	884
Sau3AI	GATC	6 cut(s)	376, 395, 580, 691, 775, 781
Sau96I	GGNCC	1 cut(s)	702
SchI	GAGTC	2 cut(s)	436, 668
ScrFI	CCNGG	1 cut(s)	894
SduI	GDGCHC	1 cut(s)	794
SetI	ASST	9 cut(s)	13, 61, 110, 167, 340, 558, 615, 903, 932
SfaNI	GCATC	2 cut(s)	498, 691
SfcI	CTRYAG	1 cut(s)	229
SfoI	GGCGCC	1 cut(s)	674
SmiMI	CAYNNNNRTG	1 cut(s)	573
SmlI	CTYRAG	1 cut(s)	917
SmoI	CTYRAG	1 cut(s)	917
SphI	GCATGC	1 cut(s)	511
Sse9I	AATT	7 cut(s)	216, 528, 532, 716, 821, 903, 1015
SsiI	CCGC	2 cut(s)	354, 803
SspDI	GGCGCC	1 cut(s)	672
SspMI	CTAG	2 cut(s)	12, 645
StyD4I	CCNGG	1 cut(s)	892
StyI	CCWWGG	1 cut(s)	954
TaqI	TCGA	2 cut(s)	75, 117
TaqII	GACCGA	1 cut(s)	141
TasI	AATT	7 cut(s)	216, 528, 532, 716, 821, 903, 1015
TfiI	GAWTC	2 cut(s)	464, 971
Tru1I	TTAA	3 cut(s)	180, 531, 947
Tru9I	TTAA	3 cut(s)	180, 531, 947
TscAI	CASTG	1 cut(s)	238
TseFI	GTSAC	1 cut(s)	584
TseI	GCWGC	1 cut(s)	883
Tsp45I	GTSAC	1 cut(s)	584
TspDTI	ATGAA	5 cut(s)	42, 248, 423, 516, 591
TspGWI	ACGGA	1 cut(s)	482
TspRI	CASTG	1 cut(s)	238
VneI	GTGCAC	1 cut(s)	790
VspI	ATTAAT	1 cut(s)	531
XapI	RAATTY	1 cut(s)	716
XbaI	TCTAGA	1 cut(s)	644
XceI	RCATGY	1 cut(s)	511
XcmI	CCANNNNNNNNNTGG	2 cut(s)	41, 230
XmiI	GTMKAC	1 cut(s)	117
XspI	CTAG	2 cut(s)	12, 645

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.