Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002901.1

Orthogroup ID

OG0004954

Physical Location & Seq

Genomic Coordinates Forward (+)

19672 .. 20580

Gene Structure 909 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002901.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

atgagggatttcccatcttgttttggtgaaaatggggttcaagttgctgattcatcttcgtcgaataatcataatactagtaggactgcccagaatttggttacttgtatctatcaatgccggttgcgcagccggacttgcttgattactgtcacatggagtaggaatttgatgggtcaaggccttagtgttgggatagatgattcgtcaaatcagtgtctttgtaaggtcgatattaaaccctggttgttctccaagagaagagggtccaagagtttagaagcttattctagtaaaattgatatatattgggacttttcttctgcaaaatttggatctgggcctgaaccggtagacggatattatgtgggaattgtggtggaccggcagatgattctccttcttggagatatgagaaaggaagcttttaaaaagactagtgctagccctgcatcttctaatgctgtttgcattgccaggagagagcacattttcgggaagaagttgttcaccacaaaggctcggttttgtaatgatggtcaagttcatgatcttgtgattgaatgcgacactgttggggtcaatgatccatgccttattgtccgtgtagacagcaagacggtgatgcaggtgaagaggcttcggtggaagttccggggaaatcacaccatcttggttgatgggcttgcagttgaagttttctgggatgtgcacaattggctctttggtacatcacctggaaatgctgtatttatgttcaagacatgcctctcagccgagaagttgtggtctggccaaccacaatccgatccaagtgccctgcagtggtcgttttcacagagattttcagacagcaagtcacaagggctaggattctcgctcatgctgtatgcttggaagaacgaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF868

Protein Analysis

302

Amino Acids

33.94

Weight (kDa)

9.02

Isoelectric Point (pI)

40.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004954)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04860 AT5G28150
fragaria_vesca	FvH4_6g03410 FvH4_6g03410 FvH4_6g03410 FvH4_6g03410
malus_domestica	MD04G1221100.v1.1 MD12G1237400.v1.1
prunus_persica	Prupe.6G340400_v2.0.a1 Prupe.6G340400_v2.0.a1 Prupe.6G340400_v2.0.a1 Prupe.6G340400_v2.0.a1 Prupe.6G340400_v2.0.a1 Prupe.6G340400_v2.0.a1 Prupe.6G340400_v2.0.a1
pyrus_communis	pycom04g19560 pycom12g21830
rosa_chinensis	RchiOBHm_Chr3g0451901
rosa_laevigata	RLG00000025639
rosa_multiflora	Rmu_sc0002901.1_g000005
rosa_roxburghii	Rroxscaffold_164G00436220 Rroxscaffold_6G00429070
rosa_rugosa	Rorug02G0636900 Rorug02G0637000 Rorug02G0637100
rosa_samantha	Rh3AG038900 Rh3BG040200 Rh3CG038700 Rh3DG039500
rosa_wichuraiana	Rw3G002910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	619
Acc16I	TGCGCA	1 cut(s)	128
Acc36I	ACCTGC	1 cut(s)	619
AccB7I	CCANNNNNTGG	1 cut(s)	97
AccI	GTMKAC	2 cut(s)	354, 609
AclWI	GGATC	3 cut(s)	343, 581, 803
AcoI	YGGCCR	1 cut(s)	793
AcsI	RAATTY	3 cut(s)	94, 166, 329
AfaI	GTAC	1 cut(s)	730
AfiI	CCNNNNNNNGG	3 cut(s)	97, 356, 825
AgeI	ACCGGT	1 cut(s)	349
AgsI	TTSAA	4 cut(s)	41, 563, 695, 760
AhdI	GACNNNNNGTC	1 cut(s)	856
AhlI	ACTAGT	2 cut(s)	77, 437
AjnI	CCWGG	3 cut(s)	242, 476, 736
AluBI	AGCT	2 cut(s)	284, 425
AluI	AGCT	2 cut(s)	284, 425
Alw21I	GWGCWC	2 cut(s)	489, 714
Alw44I	GTGCAC	1 cut(s)	710
AlwI	GGATC	3 cut(s)	343, 581, 803
AoxI	GGCC	3 cut(s)	181, 341, 793
ApaLI	GTGCAC	1 cut(s)	710
ApeKI	GCWGC	1 cut(s)	129
ApoI	RAATTY	3 cut(s)	94, 166, 329
AsiGI	ACCGGT	1 cut(s)	349
Asp700I	GAANNNNTTC	1 cut(s)	506
AspLEI	GCGC	1 cut(s)	129
AspS9I	GGNCC	3 cut(s)	267, 341, 382
AsuC2I	CCSGG	1 cut(s)	656
AsuHPI	GGTGA	5 cut(s)	38, 502, 634, 643, 726
AsuNHI	GCTAGC	1 cut(s)	443
AvaII	GGWCC	2 cut(s)	267, 382
BaeGI	GKGCMC	2 cut(s)	714, 820
BalI	TGGCCA	1 cut(s)	795
Bbv12I	GWGCWC	2 cut(s)	489, 714
BbvI	GCAGC	1 cut(s)	141
BccI	CCATC	5 cut(s)	22, 166, 530, 674, 677
BcgI	CGANNNNNNTGC	2 cut(s)	797, 831
BciT130I	CCWGG	3 cut(s)	244, 478, 738
BcnI	CCSGG	1 cut(s)	656
BcuI	ACTAGT	2 cut(s)	77, 437
BfaI	CTAG	5 cut(s)	78, 291, 438, 444, 869
BfmI	CTRYAG	1 cut(s)	821
BfuAI	ACCTGC	1 cut(s)	619
BisI	GCNGC	1 cut(s)	130
BlsI	GCNGC	1 cut(s)	131
Bme1390I	CCNGG	4 cut(s)	244, 478, 656, 738
Bme18I	GGWCC	2 cut(s)	267, 382
BmeRI	GACNNNNNGTC	1 cut(s)	856
BmgT120I	GGNCC	3 cut(s)	267, 341, 382
BmiI	GGNNCC	1 cut(s)	268
BmrFI	CCNGG	4 cut(s)	244, 478, 656, 738
BmsI	GCATC	2 cut(s)	461, 615
BmtI	GCTAGC	1 cut(s)	447
BpuMI	CCSGG	1 cut(s)	656
BsaJI	CCNNGG	2 cut(s)	242, 655
BsaWI	WCCGGW	1 cut(s)	349
Bsc4I	CCNNNNNNNGG	3 cut(s)	97, 356, 825
Bse118I	RCCGGY	3 cut(s)	120, 349, 384
Bse3DI	GCAATG	1 cut(s)	471
BseBI	CCWGG	3 cut(s)	244, 478, 738
BseDI	CCNNGG	2 cut(s)	242, 655
BseGI	GGATG	1 cut(s)	712
BseLI	CCNNNNNNNGG	3 cut(s)	97, 356, 825
BseMI	GCAATG	1 cut(s)	471
BseMII	CTCAG	1 cut(s)	786
BseSI	GKGCMC	2 cut(s)	714, 820
BseXI	GCAGC	1 cut(s)	141
BshFI	GGCC	3 cut(s)	183, 343, 795
BshTI	ACCGGT	1 cut(s)	349
BsiHKAI	GWGCWC	2 cut(s)	489, 714
BsiSI	CCGG	5 cut(s)	121, 133, 350, 385, 655
BslFI	GGGAC	1 cut(s)	326
BslI	CCNNNNNNNGG	3 cut(s)	97, 356, 825
BsmFI	GGGAC	1 cut(s)	326
BsmI	GAATGC	1 cut(s)	569
BsnI	GGCC	3 cut(s)	183, 343, 795
Bsp1286I	GDGCHC	3 cut(s)	489, 714, 820
Bsp143I	GATC	4 cut(s)	335, 550, 586, 808
BspANI	GGCC	3 cut(s)	183, 343, 795
BspCNI	CTCAG	1 cut(s)	785
BspHI	TCATGA	1 cut(s)	547
BspLI	GGNNCC	1 cut(s)	268
BspMAI	CTGCAG	1 cut(s)	825
BspMI	ACCTGC	1 cut(s)	619
BspOI	GCTAGC	1 cut(s)	447
BspPI	GGATC	3 cut(s)	343, 581, 803
BsrDI	GCAATG	1 cut(s)	471
BsrFI	RCCGGY	3 cut(s)	120, 349, 384
BssAI	RCCGGY	3 cut(s)	120, 349, 384
BssECI	CCNNGG	2 cut(s)	242, 655
BssMI	GATC	4 cut(s)	335, 550, 586, 808
Bst2UI	CCWGG	3 cut(s)	244, 478, 738
Bst4CI	ACNGT	3 cut(s)	151, 574, 622
Bst6I	CTCTTC	2 cut(s)	256, 629
BstC8I	GCNNGC	2 cut(s)	445, 687
BstDEI	CTNAG	2 cut(s)	185, 772
BstF5I	GGATG	1 cut(s)	712
BstHHI	GCGC	1 cut(s)	129
BstKTI	GATC	4 cut(s)	338, 553, 589, 811
BstMBI	GATC	4 cut(s)	335, 550, 586, 808
BstMWI	GCNNNNNNNGC	4 cut(s)	126, 138, 449, 718
BstNI	CCWGG	3 cut(s)	244, 478, 738
BstNSI	RCATGY	1 cut(s)	768
BstSCI	CCNGG	4 cut(s)	242, 476, 654, 736
BstSFI	CTRYAG	1 cut(s)	821
BstSLI	GKGCMC	2 cut(s)	714, 820
BstV1I	GCAGC	1 cut(s)	141
BstX2I	RGATCY	1 cut(s)	335
BstYI	RGATCY	1 cut(s)	335
BsuRI	GGCC	3 cut(s)	183, 343, 795
BtsCI	GGATG	1 cut(s)	712
BtsI	GCAGTG	1 cut(s)	830
BtsIMutI	CAGTG	3 cut(s)	221, 570, 830
BveI	ACCTGC	1 cut(s)	619
Cac8I	GCNNGC	2 cut(s)	445, 687
CciI	TCATGA	1 cut(s)	547
CfoI	GCGC	1 cut(s)	129
Cfr10I	RCCGGY	3 cut(s)	120, 349, 384
Cfr13I	GGNCC	3 cut(s)	267, 341, 382
Csp6I	GTAC	1 cut(s)	729
CspAI	ACCGGT	1 cut(s)	349
CviAII	CATG	5 cut(s)	156, 548, 591, 765, 883
CviQI	GTAC	1 cut(s)	729
DdeI	CTNAG	2 cut(s)	185, 772
DpnI	GATC	4 cut(s)	337, 552, 588, 810
DpnII	GATC	4 cut(s)	335, 550, 586, 808
DraI	TTTAAA	1 cut(s)	430
DriI	GACNNNNNGTC	1 cut(s)	856
EaeI	YGGCCR	1 cut(s)	793
Eam1104I	CTCTTC	2 cut(s)	256, 629
Eam1105I	GACNNNNNGTC	1 cut(s)	856
EarI	CTCTTC	2 cut(s)	256, 629
Eco147I	AGGCCT	1 cut(s)	183
Eco47I	GGWCC	2 cut(s)	267, 382
EcoRII	CCWGG	3 cut(s)	242, 476, 736
FaeI	CATG	5 cut(s)	159, 551, 594, 768, 886
FaqI	GGGAC	1 cut(s)	326
FatI	CATG	5 cut(s)	155, 547, 590, 764, 882
FblI	GTMKAC	2 cut(s)	354, 609
Fnu4HI	GCNGC	1 cut(s)	130
FokI	GGATG	1 cut(s)	719
Fsp4HI	GCNGC	1 cut(s)	130
FspBI	CTAG	5 cut(s)	78, 291, 438, 444, 869
FspI	TGCGCA	1 cut(s)	128
GlaI	GCGC	1 cut(s)	128
GluI	GCNGC	1 cut(s)	130
HaeIII	GGCC	3 cut(s)	183, 343, 795
HapII	CCGG	5 cut(s)	121, 133, 350, 385, 655
HhaI	GCGC	1 cut(s)	129
Hin1II	CATG	5 cut(s)	159, 551, 594, 768, 886
Hin6I	GCGC	1 cut(s)	127
HinP1I	GCGC	1 cut(s)	127
HindIII	AAGCTT	2 cut(s)	282, 423
HinfI	GANTC	4 cut(s)	50, 203, 394, 873
HpaII	CCGG	5 cut(s)	121, 133, 350, 385, 655
HphI	GGTGA	5 cut(s)	38, 502, 634, 643, 726
Hpy166II	GTNNAC	5 cut(s)	355, 382, 510, 610, 712
Hpy188I	TCNGA	2 cut(s)	808, 850
Hpy188III	TCNNGA	3 cut(s)	496, 548, 760
Hpy8I	GTNNAC	5 cut(s)	355, 382, 510, 610, 712
Hpy99I	CGWCG	1 cut(s)	64
HpyAV	CCTTC	1 cut(s)	410
HpyCH4III	ACNGT	3 cut(s)	151, 574, 622
HpyCH4V	TGCA	7 cut(s)	326, 452, 471, 628, 689, 712, 823
HpyF10VI	GCNNNNNNNGC	4 cut(s)	126, 138, 449, 718
HpyF3I	CTNAG	2 cut(s)	185, 772
Hsp92II	CATG	5 cut(s)	159, 551, 594, 768, 886
HspAI	GCGC	1 cut(s)	127
Kzo9I	GATC	4 cut(s)	335, 550, 586, 808
Lsp1109I	GCAGC	1 cut(s)	141
LweI	GCATC	2 cut(s)	461, 615
MaeI	CTAG	5 cut(s)	78, 291, 438, 444, 869
MaeIII	GTNAC	3 cut(s)	100, 151, 858
MalI	GATC	4 cut(s)	337, 552, 588, 810
MboI	GATC	4 cut(s)	335, 550, 586, 808
MboII	GAAGA	6 cut(s)	48, 273, 312, 447, 511, 646
MfeI	CAATTG	1 cut(s)	715
MflI	RGATCY	1 cut(s)	335
MhlI	GDGCHC	3 cut(s)	489, 714, 820
MlsI	TGGCCA	1 cut(s)	795
MluCI	AATT	6 cut(s)	94, 166, 297, 329, 372, 715
MluNI	TGGCCA	1 cut(s)	795
MnlI	CCTC	3 cut(s)	257, 630, 779
Mox20I	TGGCCA	1 cut(s)	795
MroXI	GAANNNNTTC	1 cut(s)	506
MscI	TGGCCA	1 cut(s)	795
MseI	TTAA	2 cut(s)	237, 429
Msp20I	TGGCCA	1 cut(s)	795
MspI	CCGG	5 cut(s)	121, 133, 350, 385, 655
MspR9I	CCNGG	4 cut(s)	244, 478, 656, 738
MunI	CAATTG	1 cut(s)	715
Mva1269I	GAATGC	1 cut(s)	569
MvaI	CCWGG	3 cut(s)	244, 478, 738
MwoI	GCNNNNNNNGC	4 cut(s)	126, 138, 449, 718
NciI	CCSGG	1 cut(s)	656
NdeII	GATC	4 cut(s)	335, 550, 586, 808
NheI	GCTAGC	1 cut(s)	443
NlaIII	CATG	5 cut(s)	159, 551, 594, 768, 886
NlaIV	GGNNCC	1 cut(s)	268
NmeAIII	GCCGAG	1 cut(s)	802
NmuCI	GTSAC	2 cut(s)	151, 858
NsbI	TGCGCA	1 cut(s)	128
NspI	RCATGY	1 cut(s)	768
PagI	TCATGA	1 cut(s)	547
PaqCI	CACCTGC	1 cut(s)	619
PceI	AGGCCT	1 cut(s)	183
PctI	GAATGC	1 cut(s)	569
PdmI	GAANNNNTTC	1 cut(s)	506
PfeI	GAWTC	4 cut(s)	50, 203, 394, 873
PflMI	CCANNNNNTGG	1 cut(s)	97
PinAI	ACCGGT	1 cut(s)	349
PkrI	GCNGC	1 cut(s)	131
Psp6I	CCWGG	3 cut(s)	242, 476, 736
PspGI	CCWGG	3 cut(s)	242, 476, 736
PspN4I	GGNNCC	1 cut(s)	268
PspPI	GGNCC	3 cut(s)	267, 341, 382
PstI	CTGCAG	1 cut(s)	825
PsuI	RGATCY	1 cut(s)	335
RsaI	GTAC	1 cut(s)	730
RsaNI	GTAC	1 cut(s)	729
SaqAI	TTAA	2 cut(s)	237, 429
SatI	GCNGC	1 cut(s)	130
Sau3AI	GATC	4 cut(s)	335, 550, 586, 808
Sau96I	GGNCC	3 cut(s)	267, 341, 382
ScrFI	CCNGG	4 cut(s)	244, 478, 656, 738
SduI	GDGCHC	3 cut(s)	489, 714, 820
SetI	ASST	5 cut(s)	231, 286, 427, 633, 739
SfaNI	GCATC	2 cut(s)	461, 615
SfcI	CTRYAG	1 cut(s)	821
SinI	GGWCC	2 cut(s)	267, 382
SpeI	ACTAGT	2 cut(s)	77, 437
Sse9I	AATT	6 cut(s)	94, 166, 297, 329, 372, 715
SseBI	AGGCCT	1 cut(s)	183
SspMI	CTAG	5 cut(s)	78, 291, 438, 444, 869
StuI	AGGCCT	1 cut(s)	183
StyD4I	CCNGG	4 cut(s)	242, 476, 654, 736
TaaI	ACNGT	3 cut(s)	151, 574, 622
TaqI	TCGA	2 cut(s)	62, 231
TasI	AATT	6 cut(s)	94, 166, 297, 329, 372, 715
TfiI	GAWTC	4 cut(s)	50, 203, 394, 873
Tru1I	TTAA	2 cut(s)	237, 429
Tru9I	TTAA	2 cut(s)	237, 429
TscAI	CASTG	3 cut(s)	221, 577, 830
TseFI	GTSAC	2 cut(s)	151, 858
TseI	GCWGC	1 cut(s)	129
Tsp45I	GTSAC	2 cut(s)	151, 858
TspDTI	ATGAA	2 cut(s)	42, 536
TspGWI	ACGGA	2 cut(s)	372, 593
TspRI	CASTG	3 cut(s)	221, 577, 830
Van91I	CCANNNNNTGG	1 cut(s)	97
VneI	GTGCAC	1 cut(s)	710
VpaK11BI	GGWCC	2 cut(s)	267, 382
XapI	RAATTY	3 cut(s)	94, 166, 329
XceI	RCATGY	1 cut(s)	768
XmiI	GTMKAC	2 cut(s)	354, 609
XmnI	GAANNNNTTC	1 cut(s)	506
XspI	CTAG	5 cut(s)	78, 291, 438, 444, 869

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.