Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0004954

Physical Location & Seq

Genomic Coordinates Forward (+)

75034021 .. 75035224

Gene Structure 1204 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0637000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGCGTCTCCAAACATTGGCTCTCTCTGCTGTCTTTTGTGACAAATCCTGCCGCCCCTTTTGTTTCGTTCCTATTGATTTTGATCACATGAGTGGAACTGCTACTGCTGTTACCACCGCTACTGGTGAACGAGTAGAGCCCTATGTCATCTCTATTGTTTTGGCTTTTGACCCTACCAAATCACCTCATTACAAGGTGGTCTGTCTTCGGACCATTGATGGATCCGAAGACGGCACTATCTATCACATAGTGATATATTCATCTGAGACTCAAAGTTGGAGGATTCTCAATTCTTCTTTCGAGAGGGTATTTTCCATCCTCTATGCACGCGTGCTATACTGGAATGGAGCAATTAATTGGTTAGGCATGTTTAGTGAGGTAGCATACTTTCACATAGATGAAGAACGCGACGGGTCAATTAACCCTCCTCACTTTTACGAGGAGGACATTCACAGGAGGAAATGTAGATACTTTCAGGAGTCTCGTGACGGCCACCATTTGCATCTTATTGATATTTATCGGCCTTGTATTACTAAATTTGAAGTGTTGGAGATGGGGAAAGACTACTCTGGCTGGTTTGTCAAGTACCTTGTTGACATTGATCCCATATGCCGGCGGAAACTGTCTGATCGATTTGTTGTTCTATTTCTAGATCAAGACGAAAATGAAGAAGAGGAAAGTTCGTCTCTGTCGCTGCATACGCCTGGCAAACTCATTTCTTATAATCTTAAGAGCAAGACCTACAAATCTCTTGATTTAACTCCCAAGCCCGGAGTTAATGATTCTCTCTTACGAGTTGAAGCATCTAATTATCGATATATGGAGACTCTGGCCTGCGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF868

Protein Analysis

280

Amino Acids

32.48

Weight (kDa)

5.7

Isoelectric Point (pI)

47.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004954)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04860 AT5G28150
fragaria_vesca	FvH4_6g03410 FvH4_6g03410 FvH4_6g03410 FvH4_6g03410
malus_domestica	MD04G1221100.v1.1 MD12G1237400.v1.1
prunus_persica	Prupe.6G340400_v2.0.a1 Prupe.6G340400_v2.0.a1 Prupe.6G340400_v2.0.a1 Prupe.6G340400_v2.0.a1 Prupe.6G340400_v2.0.a1 Prupe.6G340400_v2.0.a1 Prupe.6G340400_v2.0.a1
pyrus_communis	pycom04g19560 pycom12g21830
rosa_chinensis	RchiOBHm_Chr3g0451901
rosa_laevigata	RLG00000025639
rosa_multiflora	Rmu_sc0002901.1_g000005
rosa_roxburghii	Rroxscaffold_164G00436220 Rroxscaffold_6G00429070
rosa_rugosa	Rorug02G0636900 Rorug02G0637000 Rorug02G0637100
rosa_samantha	Rh3AG038900 Rh3BG040200 Rh3CG038700 Rh3DG039500
rosa_wichuraiana	Rw3G002910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	723
AccB7I	CCANNNNNTGG	1 cut(s)	16
AccII	CGCG	2 cut(s)	330, 408
AciI	CCGC	3 cut(s)	52, 117, 616
AclWI	GGATC	3 cut(s)	216, 229, 596
AcoI	YGGCCR	1 cut(s)	490
AcsI	RAATTY	1 cut(s)	536
AdeI	CACNNNGTG	1 cut(s)	250
AfaI	GTAC	1 cut(s)	587
AfiI	CCNNNNNNNGG	3 cut(s)	16, 612, 770
AflII	CTTAAG	1 cut(s)	728
AflIII	ACRYGT	1 cut(s)	328
AgsI	TTSAA	2 cut(s)	542, 800
AjnI	CCWGG	1 cut(s)	703
AleI	CACNNNNGTG	1 cut(s)	90
Alw26I	GTCTC	5 cut(s)	11, 260, 486, 690, 818
AlwI	GGATC	3 cut(s)	216, 229, 596
AoxI	GGCC	3 cut(s)	490, 521, 831
ApeKI	GCWGC	1 cut(s)	694
ApoI	RAATTY	1 cut(s)	536
AseI	ATTAAT	1 cut(s)	354
AspS9I	GGNCC	1 cut(s)	210
AsuC2I	CCSGG	1 cut(s)	771
AsuHPI	GGTGA	2 cut(s)	137, 174
AvaII	GGWCC	1 cut(s)	210
BamHI	GGATCC	1 cut(s)	221
BanII	GRGCYC	1 cut(s)	141
BauI	CACGAG	1 cut(s)	483
BbsI	GAAGAC	2 cut(s)	197, 234
BbvI	GCAGC	1 cut(s)	681
BccI	CCATC	3 cut(s)	212, 323, 547
BceAI	ACGGC	2 cut(s)	247, 505
BciT130I	CCWGG	1 cut(s)	705
BclI	TGATCA	1 cut(s)	82
BcnI	CCSGG	1 cut(s)	771
BcoDI	GTCTC	5 cut(s)	11, 260, 486, 690, 818
BfaI	CTAG	1 cut(s)	650
BfrI	CTTAAG	1 cut(s)	728
BisI	GCNGC	2 cut(s)	52, 695
BlsI	GCNGC	2 cut(s)	53, 696
Bme1390I	CCNGG	2 cut(s)	705, 771
Bme18I	GGWCC	1 cut(s)	210
BmgT120I	GGNCC	1 cut(s)	210
BmiI	GGNNCC	1 cut(s)	223
BmrFI	CCNGG	2 cut(s)	705, 771
BmsI	GCATC	2 cut(s)	511, 812
BpiI	GAAGAC	2 cut(s)	197, 234
BpuMI	CCSGG	1 cut(s)	771
Bsa29I	ATCGAT	2 cut(s)	631, 814
BsaBI	GATNNNNATC	2 cut(s)	81, 516
BsaXI	ACNNNNNCTCC	2 cut(s)	448, 478
Bsc4I	CCNNNNNNNGG	3 cut(s)	16, 612, 770
Bse118I	RCCGGY	1 cut(s)	612
Bse1I	ACTGG	2 cut(s)	127, 344
Bse8I	GATNNNNATC	2 cut(s)	81, 516
BseBI	CCWGG	1 cut(s)	705
BseCI	ATCGAT	2 cut(s)	631, 814
BseGI	GGATG	1 cut(s)	315
BseJI	GATNNNNATC	2 cut(s)	81, 516
BseLI	CCNNNNNNNGG	3 cut(s)	16, 612, 770
BseMII	CTCAG	1 cut(s)	255
BseNI	ACTGG	2 cut(s)	127, 344
BseRI	GAGGAG	2 cut(s)	417, 455
BseXI	GCAGC	1 cut(s)	681
Bsh1236I	CGCG	2 cut(s)	330, 408
BshFI	GGCC	3 cut(s)	492, 523, 833
BshVI	ATCGAT	2 cut(s)	631, 814
BsiSI	CCGG	2 cut(s)	613, 771
BslI	CCNNNNNNNGG	3 cut(s)	16, 612, 770
BsmAI	GTCTC	5 cut(s)	11, 260, 486, 690, 818
BsmBI	CGTCTC	2 cut(s)	11, 690
BsnI	GGCC	3 cut(s)	492, 523, 833
Bsp1286I	GDGCHC	1 cut(s)	141
Bsp143I	GATC	5 cut(s)	82, 221, 601, 628, 652
BspACI	CCGC	3 cut(s)	52, 117, 616
BspANI	GGCC	3 cut(s)	492, 523, 833
BspCNI	CTCAG	1 cut(s)	256
BspDI	ATCGAT	2 cut(s)	631, 814
BspFNI	CGCG	2 cut(s)	330, 408
BspLI	GGNNCC	1 cut(s)	223
BspPI	GGATC	3 cut(s)	216, 229, 596
BspTI	CTTAAG	1 cut(s)	728
BsrFI	RCCGGY	1 cut(s)	612
BsrI	ACTGG	2 cut(s)	127, 344
BssAI	RCCGGY	1 cut(s)	612
BssMI	GATC	5 cut(s)	82, 221, 601, 628, 652
BssSI	CACGAG	1 cut(s)	483
Bst2BI	CACGAG	1 cut(s)	483
Bst2UI	CCWGG	1 cut(s)	705
Bst4CI	ACNGT	1 cut(s)	624
Bst6I	CTCTTC	1 cut(s)	666
BstAFI	CTTAAG	1 cut(s)	728
BstC8I	GCNNGC	4 cut(s)	328, 332, 614, 835
BstDEI	CTNAG	1 cut(s)	264
BstF5I	GGATG	1 cut(s)	315
BstFNI	CGCG	2 cut(s)	330, 408
BstKTI	GATC	5 cut(s)	85, 224, 604, 631, 655
BstMAI	GTCTC	5 cut(s)	11, 260, 486, 690, 818
BstMBI	GATC	5 cut(s)	82, 221, 601, 628, 652
BstMWI	GCNNNNNNNGC	2 cut(s)	26, 700
BstNI	CCWGG	1 cut(s)	705
BstNSI	RCATGY	1 cut(s)	370
BstSCI	CCNGG	2 cut(s)	703, 769
BstUI	CGCG	2 cut(s)	330, 408
BstV1I	GCAGC	1 cut(s)	681
BstV2I	GAAGAC	2 cut(s)	197, 234
BstX2I	RGATCY	1 cut(s)	221
BstYI	RGATCY	1 cut(s)	221
Bsu15I	ATCGAT	2 cut(s)	631, 814
BsuRI	GGCC	3 cut(s)	492, 523, 833
BsuTUI	ATCGAT	2 cut(s)	631, 814
BtsCI	GGATG	1 cut(s)	315
Cac8I	GCNNGC	4 cut(s)	328, 332, 614, 835
Cfr10I	RCCGGY	1 cut(s)	612
Cfr13I	GGNCC	1 cut(s)	210
ClaI	ATCGAT	2 cut(s)	631, 814
Csp6I	GTAC	1 cut(s)	586
CviAII	CATG	2 cut(s)	88, 367
CviJI	RGCY	8 cut(s)	20, 139, 164, 492, 523, 573, 769, 833
CviKI_1	RGCY	8 cut(s)	20, 139, 164, 492, 523, 573, 769, 833
CviQI	GTAC	1 cut(s)	586
DdeI	CTNAG	1 cut(s)	264
DpnI	GATC	5 cut(s)	84, 223, 603, 630, 654
DpnII	GATC	5 cut(s)	82, 221, 601, 628, 652
DraIII	CACNNNGTG	1 cut(s)	250
EaeI	YGGCCR	1 cut(s)	490
Eam1104I	CTCTTC	1 cut(s)	666
EarI	CTCTTC	1 cut(s)	666
EciI	GGCGGA	1 cut(s)	631
Eco24I	GRGCYC	1 cut(s)	141
Eco47I	GGWCC	1 cut(s)	210
EcoRII	CCWGG	1 cut(s)	703
EcoT38I	GRGCYC	1 cut(s)	141
Esp3I	CGTCTC	2 cut(s)	11, 690
FaeI	CATG	2 cut(s)	91, 370
FatI	CATG	2 cut(s)	87, 366
FauNDI	CATATG	1 cut(s)	608
FbaI	TGATCA	1 cut(s)	82
Fnu4HI	GCNGC	2 cut(s)	52, 695
FokI	GGATG	1 cut(s)	302
FriOI	GRGCYC	1 cut(s)	141
Fsp4HI	GCNGC	2 cut(s)	52, 695
FspBI	CTAG	1 cut(s)	650
GluI	GCNGC	2 cut(s)	52, 695
HaeIII	GGCC	3 cut(s)	492, 523, 833
HapII	CCGG	2 cut(s)	613, 771
Hin1II	CATG	2 cut(s)	91, 370
HincII	GTYRAC	1 cut(s)	595
HindII	GTYRAC	1 cut(s)	595
HinfI	GANTC	5 cut(s)	268, 283, 479, 782, 826
HpaII	CCGG	2 cut(s)	613, 771
HphI	GGTGA	2 cut(s)	137, 174
Hpy166II	GTNNAC	2 cut(s)	128, 595
Hpy188I	TCNGA	4 cut(s)	210, 226, 265, 628
Hpy188III	TCNNGA	6 cut(s)	301, 476, 485, 650, 656, 752
Hpy8I	GTNNAC	2 cut(s)	128, 595
Hpy99I	CGWCG	1 cut(s)	413
HpyCH4III	ACNGT	1 cut(s)	624
HpyCH4V	TGCA	3 cut(s)	326, 502, 697
HpyF10VI	GCNNNNNNNGC	2 cut(s)	26, 700
HpyF3I	CTNAG	1 cut(s)	264
Hsp92II	CATG	2 cut(s)	91, 370
KroI	GCCGGC	1 cut(s)	612
KroNI	GCCGGC	1 cut(s)	614
Ksp22I	TGATCA	1 cut(s)	82
Kzo9I	GATC	5 cut(s)	82, 221, 601, 628, 652
LmnI	GCTCC	1 cut(s)	347
Lsp1109I	GCAGC	1 cut(s)	681
LweI	GCATC	2 cut(s)	511, 812
MaeI	CTAG	1 cut(s)	650
MaeIII	GTNAC	3 cut(s)	38, 109, 485
MalI	GATC	5 cut(s)	84, 223, 603, 630, 654
MboI	GATC	5 cut(s)	82, 221, 601, 628, 652
MboII	GAAGA	6 cut(s)	197, 239, 285, 413, 680, 683
MflI	RGATCY	1 cut(s)	221
MhlI	GDGCHC	1 cut(s)	141
MluCI	AATT	6 cut(s)	289, 351, 355, 417, 536, 808
MluI	ACGCGT	1 cut(s)	328
MlyI	GAGTC	3 cut(s)	262, 488, 820
MmeI	TCCRAC	2 cut(s)	257, 528
MroNI	GCCGGC	1 cut(s)	612
MseI	TTAA	5 cut(s)	354, 420, 729, 758, 777
MslI	CAYNNNNRTG	2 cut(s)	90, 396
MspCI	CTTAAG	1 cut(s)	728
MspI	CCGG	2 cut(s)	613, 771
MspR9I	CCNGG	2 cut(s)	705, 771
MvaI	CCWGG	1 cut(s)	705
MvnI	CGCG	2 cut(s)	330, 408
MwoI	GCNNNNNNNGC	2 cut(s)	26, 700
NaeI	GCCGGC	1 cut(s)	614
NciI	CCSGG	1 cut(s)	771
NdeI	CATATG	1 cut(s)	608
NdeII	GATC	5 cut(s)	82, 221, 601, 628, 652
NgoMIV	GCCGGC	1 cut(s)	612
NlaIII	CATG	2 cut(s)	91, 370
NlaIV	GGNNCC	1 cut(s)	223
NmuCI	GTSAC	2 cut(s)	38, 485
NspI	RCATGY	1 cut(s)	370
OliI	CACNNNNGTG	1 cut(s)	90
PdiI	GCCGGC	1 cut(s)	614
PfeI	GAWTC	2 cut(s)	283, 782
PflMI	CCANNNNNTGG	1 cut(s)	16
PkrI	GCNGC	2 cut(s)	53, 696
PleI	GAGTC	3 cut(s)	262, 487, 820
PpsI	GAGTC	3 cut(s)	262, 487, 820
PshBI	ATTAAT	1 cut(s)	354
PsiI	TTATAA	1 cut(s)	723
Psp6I	CCWGG	1 cut(s)	703
PspGI	CCWGG	1 cut(s)	703
PspN4I	GGNNCC	1 cut(s)	223
PspPI	GGNCC	1 cut(s)	210
PsuI	RGATCY	1 cut(s)	221
RsaI	GTAC	1 cut(s)	587
RsaNI	GTAC	1 cut(s)	586
RseI	CAYNNNNRTG	2 cut(s)	90, 396
SaqAI	TTAA	5 cut(s)	354, 420, 729, 758, 777
SatI	GCNGC	2 cut(s)	52, 695
Sau3AI	GATC	5 cut(s)	82, 221, 601, 628, 652
Sau96I	GGNCC	1 cut(s)	210
SchI	GAGTC	3 cut(s)	262, 488, 820
ScrFI	CCNGG	2 cut(s)	705, 771
SduI	GDGCHC	1 cut(s)	141
SetI	ASST	5 cut(s)	187, 198, 381, 591, 743
SfaNI	GCATC	2 cut(s)	511, 812
SinI	GGWCC	1 cut(s)	210
SmiMI	CAYNNNNRTG	2 cut(s)	90, 396
SmlI	CTYRAG	1 cut(s)	728
SmoI	CTYRAG	1 cut(s)	728
Sse9I	AATT	6 cut(s)	289, 351, 355, 417, 536, 808
SsiI	CCGC	3 cut(s)	52, 117, 616
SspMI	CTAG	1 cut(s)	650
StyD4I	CCNGG	2 cut(s)	703, 769
TaaI	ACNGT	1 cut(s)	624
TaqI	TCGA	3 cut(s)	300, 631, 814
TasI	AATT	6 cut(s)	289, 351, 355, 417, 536, 808
TauI	GCSGC	1 cut(s)	54
TfiI	GAWTC	2 cut(s)	283, 782
Tru1I	TTAA	5 cut(s)	354, 420, 729, 758, 777
Tru9I	TTAA	5 cut(s)	354, 420, 729, 758, 777
TseFI	GTSAC	2 cut(s)	38, 485
TseI	GCWGC	1 cut(s)	694
Tsp45I	GTSAC	2 cut(s)	38, 485
TspDTI	ATGAA	3 cut(s)	249, 414, 681
Van91I	CCANNNNNTGG	1 cut(s)	16
Vha464I	CTTAAG	1 cut(s)	728
VpaK11BI	GGWCC	1 cut(s)	210
VspI	ATTAAT	1 cut(s)	354
XapI	RAATTY	1 cut(s)	536
XbaI	TCTAGA	1 cut(s)	649
XceI	RCATGY	1 cut(s)	370
XspI	CTAG	1 cut(s)	650

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.