Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0004954

Physical Location & Seq

Genomic Coordinates Reverse (-)

75039650 .. 75040843

Gene Structure 1194 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0637100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1194 bp

ATGGAACACCGAGCGCCGAATCTCCCACCACCCAAGTCTCCTGCCGGCTCATCATCTTCTGAAGAAGATTCTGAAGAAGGACCCTGGACCATTCTCAATCACATTCCTCCGGGTCCAGGCGAAGACCGTATGGTTCGCCAAGAAAGAGTCTTTCTTTTTCAGGGAAATCCAAGAACCGAACCCAAAGTGTTGCATCTGTTCTCCGATGGGAGTTTCAGTCTTCAGAATAAGGCTCGTCCCTCTCAATTAGACCAACTTGAATTGGTTGGGCATTCTAGAGGACAAGTATGTTTTCAAAATCTAAGCCAGAGACAGATCTTGGTTTGGGATTTGGAAGCTCAAAGAGTAAGGAAAGTGCTTGATGATGTGACCGAGGGAGGAGAATCGTCCTATGGATTCGGGCACAGAAACGGGGGCTTATTCATGGTGGTTAGACTTGGACGCCAACCTCTATTTCACAACATGCAGGGTTACGGATACTACCTCCATACCTTTATCGAGAGAGAAAGAGAACAGTGGACCAGAGTTGAGGTTAGGTTGGAGGCTCTGTATGATTTTAGAACCTTTGGACCTGCGATATTGGTCTCTCAGAATGGCATGCTTTACTGGAAAGCGGTGAGTGCACAACGTGCTTACATTATTACATATGATTTACAGACTGAACTAGTTGGCCGCTTGGTAGCCCCTGGAGAAGATCGTCTTAATAATGTGGGGTTAGTGCTGGGCCATGGGTTCAAAGGTCAACTGGCTGCGTCAGTATATGTACCTCCTGTACATCAAGAAGGACATTCTTATTTGCACATTTGGGTCCTCCTGAAAGAACTTGCCATGTACCATTGGCACAAGCTAGTGGCTTTGCCTTGCCATGATTACACTAGTGATGGTGAAGTGTTTGTGCCCCTAGTATTTTACTATGACAGAGAAGGTGGTGCAATCAATCTTCTCGTGCACAGGAACAAGGAGGAAGTCGTGCATATGATACCAGCCAAGAAGCGGGTTAATCCATTAGCTGATGCTGAGTTCAGGAGAGTACCTGTACCCTCAGCCATACCTTCAGGCATGAAAATGCAGCTTGGATCCCGTAGGATGTTTCAAGCAACTCCACTTGTGAAGCCTATGGGAAACAGGGGTGTTGCAGAGGACAATAACACAGATGATGATGATGATGAAGGTATTGCTTTCGCTCTTGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF868

Protein Analysis

397

Amino Acids

44.98

Weight (kDa)

6.16

Isoelectric Point (pI)

47.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004954)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04860 AT5G28150
fragaria_vesca	FvH4_6g03410 FvH4_6g03410 FvH4_6g03410 FvH4_6g03410
malus_domestica	MD04G1221100.v1.1 MD12G1237400.v1.1
prunus_persica	Prupe.6G340400_v2.0.a1 Prupe.6G340400_v2.0.a1 Prupe.6G340400_v2.0.a1 Prupe.6G340400_v2.0.a1 Prupe.6G340400_v2.0.a1 Prupe.6G340400_v2.0.a1 Prupe.6G340400_v2.0.a1
pyrus_communis	pycom04g19560 pycom12g21830
rosa_chinensis	RchiOBHm_Chr3g0451901
rosa_laevigata	RLG00000025639
rosa_multiflora	Rmu_sc0002901.1_g000005
rosa_roxburghii	Rroxscaffold_164G00436220 Rroxscaffold_6G00429070
rosa_rugosa	Rorug02G0636900 Rorug02G0637000 Rorug02G0637100
rosa_samantha	Rh3AG038900 Rh3BG040200 Rh3CG038700 Rh3DG039500
rosa_wichuraiana	Rw3G002910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	580
AciI	CCGC	3 cut(s)	614, 673, 994
AclWI	GGATC	2 cut(s)	1071, 1084
AcoI	YGGCCR	1 cut(s)	670
AcuI	CTGAAG	4 cut(s)	81, 93, 206, 1038
AcyI	GRCGYC	1 cut(s)	442
AdeI	CACNNNGTG	1 cut(s)	629
AfaI	GTAC	5 cut(s)	765, 774, 833, 1032, 1038
AfiI	CCNNNNNNNGG	2 cut(s)	116, 993
AgsI	TTSAA	4 cut(s)	260, 296, 736, 1094
AhlI	ACTAGT	2 cut(s)	664, 875
AjnI	CCWGG	3 cut(s)	83, 115, 685
AjuI	GAANNNNNNNTTGG	2 cut(s)	438, 470
AluBI	AGCT	4 cut(s)	338, 847, 1010, 1072
AluI	AGCT	4 cut(s)	338, 847, 1010, 1072
Alw21I	GWGCWC	2 cut(s)	625, 951
Alw26I	GTCTC	3 cut(s)	42, 304, 589
Alw44I	GTGCAC	2 cut(s)	621, 947
AlwI	GGATC	2 cut(s)	1071, 1084
AoxI	GGCC	2 cut(s)	670, 724
ApaLI	GTGCAC	2 cut(s)	621, 947
ApeKI	GCWGC	2 cut(s)	749, 1069
AspLEI	GCGC	1 cut(s)	16
AspS9I	GGNCC	7 cut(s)	80, 87, 113, 519, 569, 724, 808
AsuC2I	CCSGG	1 cut(s)	111
AsuHPI	GGTGA	2 cut(s)	628, 896
AvaII	GGWCC	6 cut(s)	80, 87, 113, 519, 569, 808
BaeGI	GKGCMC	4 cut(s)	405, 625, 900, 951
BamHI	GGATCC	1 cut(s)	1076
BauI	CACGAG	1 cut(s)	944
BbsI	GAAGAC	2 cut(s)	129, 212
Bbv12I	GWGCWC	2 cut(s)	625, 951
BbvCI	CCTCAGC	1 cut(s)	1042
BbvI	GCAGC	2 cut(s)	736, 1081
BccI	CCATC	2 cut(s)	200, 875
BciT130I	CCWGG	3 cut(s)	85, 117, 687
BciVI	GTATCC	1 cut(s)	470
BcnI	CCSGG	1 cut(s)	111
BcoDI	GTCTC	3 cut(s)	42, 304, 589
BcuI	ACTAGT	2 cut(s)	664, 875
BfaI	CTAG	5 cut(s)	276, 665, 848, 876, 902
BfoI	RGCGCY	1 cut(s)	17
BfuAI	ACCTGC	1 cut(s)	580
BfuI	GTATCC	1 cut(s)	470
BglII	AGATCT	1 cut(s)	315
BisI	GCNGC	3 cut(s)	673, 750, 1070
BlsI	GCNGC	3 cut(s)	674, 751, 1071
Bme1390I	CCNGG	4 cut(s)	85, 111, 117, 687
Bme18I	GGWCC	6 cut(s)	80, 87, 113, 519, 569, 808
BmgT120I	GGNCC	7 cut(s)	80, 87, 113, 519, 569, 724, 808
BmiI	GGNNCC	4 cut(s)	82, 114, 809, 1078
BmrFI	CCNGG	4 cut(s)	85, 111, 117, 687
BmsI	GCATC	2 cut(s)	202, 1003
BpiI	GAAGAC	2 cut(s)	129, 212
BpmI	CTGGAG	1 cut(s)	708
Bpu10I	CCTNAGC	1 cut(s)	1042
BpuMI	CCSGG	1 cut(s)	111
BsaHI	GRCGYC	1 cut(s)	442
BsaI	GGTCTC	1 cut(s)	589
BsaJI	CCNNGG	4 cut(s)	83, 372, 685, 727
BsaXI	ACNNNNNCTCC	4 cut(s)	202, 232, 533, 563
Bsc4I	CCNNNNNNNGG	2 cut(s)	116, 993
Bse118I	RCCGGY	1 cut(s)	44
Bse1I	ACTGG	2 cut(s)	611, 750
BseBI	CCWGG	3 cut(s)	85, 117, 687
BseDI	CCNNGG	4 cut(s)	83, 372, 685, 727
BseGI	GGATG	1 cut(s)	1092
BseLI	CCNNNNNNNGG	2 cut(s)	116, 993
BseMII	CTCAG	3 cut(s)	602, 1008, 1056
BseNI	ACTGG	2 cut(s)	611, 750
BseRI	GAGGAG	1 cut(s)	393
BseSI	GKGCMC	4 cut(s)	405, 625, 900, 951
BseXI	GCAGC	2 cut(s)	736, 1081
BseYI	CCCAGC	1 cut(s)	721
BshFI	GGCC	2 cut(s)	672, 726
BsiHKAI	GWGCWC	2 cut(s)	625, 951
BsiSI	CCGG	2 cut(s)	45, 110
BslFI	GGGAC	1 cut(s)	222
BslI	CCNNNNNNNGG	2 cut(s)	116, 993
BsmAI	GTCTC	3 cut(s)	42, 304, 589
BsmFI	GGGAC	1 cut(s)	222
BsmI	GAATGC	1 cut(s)	271
BsnI	GGCC	2 cut(s)	672, 726
Bso31I	GGTCTC	1 cut(s)	589
Bsp1286I	GDGCHC	4 cut(s)	405, 625, 900, 951
Bsp1407I	TGTACA	1 cut(s)	772
Bsp143I	GATC	3 cut(s)	315, 694, 1076
Bsp19I	CCATGG	1 cut(s)	727
BspACI	CCGC	3 cut(s)	614, 673, 994
BspANI	GGCC	2 cut(s)	672, 726
BspCNI	CTCAG	3 cut(s)	601, 1009, 1055
BspLI	GGNNCC	4 cut(s)	82, 114, 809, 1078
BspMI	ACCTGC	1 cut(s)	580
BspPI	GGATC	2 cut(s)	1071, 1084
BspTNI	GGTCTC	1 cut(s)	589
BsrFI	RCCGGY	1 cut(s)	44
BsrGI	TGTACA	1 cut(s)	772
BsrI	ACTGG	2 cut(s)	611, 750
BssAI	RCCGGY	1 cut(s)	44
BssECI	CCNNGG	4 cut(s)	83, 372, 685, 727
BssMI	GATC	3 cut(s)	315, 694, 1076
BssNI	GRCGYC	1 cut(s)	442
BssSI	CACGAG	1 cut(s)	944
BssT1I	CCWWGG	1 cut(s)	727
Bst2BI	CACGAG	1 cut(s)	944
Bst2UI	CCWGG	3 cut(s)	85, 117, 687
Bst4CI	ACNGT	2 cut(s)	128, 516
BstACI	GRCGYC	1 cut(s)	442
BstAPI	GCANNNNNTGC	1 cut(s)	629
BstAUI	TGTACA	1 cut(s)	772
BstC8I	GCNNGC	2 cut(s)	46, 599
BstDEI	CTNAG	4 cut(s)	302, 588, 1017, 1042
BstDSI	CCRYGG	1 cut(s)	727
BstF5I	GGATG	1 cut(s)	1092
BstH2I	RGCGCY	1 cut(s)	17
BstHHI	GCGC	1 cut(s)	16
BstKTI	GATC	3 cut(s)	318, 697, 1079
BstMAI	GTCTC	3 cut(s)	42, 304, 589
BstMBI	GATC	3 cut(s)	315, 694, 1076
BstMWI	GCNNNNNNNGC	2 cut(s)	620, 629
BstNI	CCWGG	3 cut(s)	85, 117, 687
BstNSI	RCATGY	2 cut(s)	466, 601
BstSCI	CCNGG	4 cut(s)	83, 109, 115, 685
BstSLI	GKGCMC	4 cut(s)	405, 625, 900, 951
BstV1I	GCAGC	2 cut(s)	736, 1081
BstV2I	GAAGAC	2 cut(s)	129, 212
BstX2I	RGATCY	2 cut(s)	315, 1076
BstYI	RGATCY	2 cut(s)	315, 1076
BsuI	GTATCC	1 cut(s)	470
BsuRI	GGCC	2 cut(s)	672, 726
BtgI	CCRYGG	1 cut(s)	727
BtsCI	GGATG	1 cut(s)	1092
BtsIMutI	CAGTG	1 cut(s)	521
BveI	ACCTGC	1 cut(s)	580
Cac8I	GCNNGC	2 cut(s)	46, 599
CfoI	GCGC	1 cut(s)	16
Cfr10I	RCCGGY	1 cut(s)	44
Cfr13I	GGNCC	7 cut(s)	80, 87, 113, 519, 569, 724, 808
CseI	GACGC	2 cut(s)	450, 741
Csp6I	GTAC	5 cut(s)	764, 773, 832, 1031, 1037
CviAII	CATG	7 cut(s)	424, 463, 598, 728, 829, 866, 1060
CviQI	GTAC	5 cut(s)	764, 773, 832, 1031, 1037
DdeI	CTNAG	4 cut(s)	302, 588, 1017, 1042
DpnI	GATC	3 cut(s)	317, 696, 1078
DpnII	GATC	3 cut(s)	315, 694, 1076
DraIII	CACNNNGTG	1 cut(s)	629
EaeI	YGGCCR	1 cut(s)	670
Eco130I	CCWWGG	1 cut(s)	727
Eco31I	GGTCTC	1 cut(s)	589
Eco47I	GGWCC	6 cut(s)	80, 87, 113, 519, 569, 808
Eco57I	CTGAAG	4 cut(s)	81, 93, 206, 1038
EcoO109I	RGGNCCY	2 cut(s)	80, 808
EcoRII	CCWGG	3 cut(s)	83, 115, 685
EcoT14I	CCWWGG	1 cut(s)	727
ErhI	CCWWGG	1 cut(s)	727
FaeI	CATG	7 cut(s)	427, 466, 601, 731, 832, 869, 1063
FalI	AAGNNNNNCTT	2 cut(s)	684, 716
FaqI	GGGAC	1 cut(s)	222
FatI	CATG	7 cut(s)	423, 462, 597, 727, 828, 865, 1059
FauI	CCCGC	1 cut(s)	987
FauNDI	CATATG	2 cut(s)	646, 975
Fnu4HI	GCNGC	3 cut(s)	673, 750, 1070
FokI	GGATG	1 cut(s)	1099
Fsp4HI	GCNGC	3 cut(s)	673, 750, 1070
FspBI	CTAG	5 cut(s)	276, 665, 848, 876, 902
GlaI	GCGC	1 cut(s)	15
GluI	GCNGC	3 cut(s)	673, 750, 1070
GsaI	CCCAGC	1 cut(s)	725
GsuI	CTGGAG	1 cut(s)	708
HaeII	RGCGCY	1 cut(s)	17
HaeIII	GGCC	2 cut(s)	672, 726
HapII	CCGG	2 cut(s)	45, 110
HgaI	GACGC	2 cut(s)	450, 741
HhaI	GCGC	1 cut(s)	16
Hin1I	GRCGYC	1 cut(s)	442
Hin1II	CATG	7 cut(s)	427, 466, 601, 731, 832, 869, 1063
Hin6I	GCGC	1 cut(s)	14
HinP1I	GCGC	1 cut(s)	14
HincII	GTYRAC	1 cut(s)	743
HindII	GTYRAC	1 cut(s)	743
HinfI	GANTC	5 cut(s)	19, 68, 147, 383, 396
HpaII	CCGG	2 cut(s)	45, 110
HphI	GGTGA	2 cut(s)	628, 896
Hpy166II	GTNNAC	4 cut(s)	519, 623, 743, 949
Hpy188I	TCNGA	5 cut(s)	61, 73, 205, 225, 591
Hpy188III	TCNNGA	6 cut(s)	276, 499, 779, 814, 1024, 1187
Hpy8I	GTNNAC	4 cut(s)	519, 623, 743, 949
HpyAV	CCTTC	5 cut(s)	71, 776, 917, 1062, 1163
HpyCH4III	ACNGT	2 cut(s)	128, 516
HpyCH4IV	ACGT	1 cut(s)	628
HpyCH4V	TGCA	9 cut(s)	193, 466, 623, 799, 932, 949, 973, 1069, 1136
HpyF10VI	GCNNNNNNNGC	2 cut(s)	620, 629
HpyF3I	CTNAG	4 cut(s)	302, 588, 1017, 1042
HpySE526I	ACGT	1 cut(s)	628
Hsp92I	GRCGYC	1 cut(s)	442
Hsp92II	CATG	7 cut(s)	427, 466, 601, 731, 832, 869, 1063
HspAI	GCGC	1 cut(s)	14
KroI	GCCGGC	1 cut(s)	44
KroNI	GCCGGC	1 cut(s)	46
Kzo9I	GATC	3 cut(s)	315, 694, 1076
Lsp1109I	GCAGC	2 cut(s)	736, 1081
LweI	GCATC	2 cut(s)	202, 1003
MaeI	CTAG	5 cut(s)	276, 665, 848, 876, 902
MaeII	ACGT	1 cut(s)	628
MaeIII	GTNAC	2 cut(s)	367, 470
MalI	GATC	3 cut(s)	317, 696, 1078
MboI	GATC	3 cut(s)	315, 694, 1076
MboII	GAAGA	8 cut(s)	48, 74, 77, 86, 134, 212, 704, 932
MflI	RGATCY	2 cut(s)	315, 1076
MhlI	GDGCHC	4 cut(s)	405, 625, 900, 951
MluCI	AATT	2 cut(s)	245, 260
MlyI	GAGTC	1 cut(s)	156
MmeI	TCCRAC	1 cut(s)	519
MroNI	GCCGGC	1 cut(s)	44
MseI	TTAA	2 cut(s)	702, 999
MslI	CAYNNNNRTG	1 cut(s)	1064
MspI	CCGG	2 cut(s)	45, 110
MspR9I	CCNGG	4 cut(s)	85, 111, 117, 687
Mva1269I	GAATGC	1 cut(s)	271
MvaI	CCWGG	3 cut(s)	85, 117, 687
MwoI	GCNNNNNNNGC	2 cut(s)	620, 629
NaeI	GCCGGC	1 cut(s)	46
NciI	CCSGG	1 cut(s)	111
NcoI	CCATGG	1 cut(s)	727
NdeI	CATATG	2 cut(s)	646, 975
NdeII	GATC	3 cut(s)	315, 694, 1076
NgoMIV	GCCGGC	1 cut(s)	44
NlaIII	CATG	7 cut(s)	427, 466, 601, 731, 832, 869, 1063
NlaIV	GGNNCC	4 cut(s)	82, 114, 809, 1078
NmuCI	GTSAC	1 cut(s)	367
NspI	RCATGY	2 cut(s)	466, 601
PaeI	GCATGC	1 cut(s)	601
PctI	GAATGC	1 cut(s)	271
PdiI	GCCGGC	1 cut(s)	46
PfeI	GAWTC	4 cut(s)	19, 68, 383, 396
PkrI	GCNGC	3 cut(s)	674, 751, 1071
PleI	GAGTC	1 cut(s)	155
PpsI	GAGTC	1 cut(s)	155
PpuMI	RGGWCCY	2 cut(s)	80, 808
Psp5II	RGGWCCY	2 cut(s)	80, 808
Psp6I	CCWGG	3 cut(s)	83, 115, 685
PspFI	CCCAGC	1 cut(s)	721
PspGI	CCWGG	3 cut(s)	83, 115, 685
PspN4I	GGNNCC	4 cut(s)	82, 114, 809, 1078
PspPI	GGNCC	7 cut(s)	80, 87, 113, 519, 569, 724, 808
PspPPI	RGGWCCY	2 cut(s)	80, 808
PsuI	RGATCY	2 cut(s)	315, 1076
RsaI	GTAC	5 cut(s)	765, 774, 833, 1032, 1038
RsaNI	GTAC	5 cut(s)	764, 773, 832, 1031, 1037
RseI	CAYNNNNRTG	1 cut(s)	1064
SaqAI	TTAA	2 cut(s)	702, 999
SatI	GCNGC	3 cut(s)	673, 750, 1070
Sau3AI	GATC	3 cut(s)	315, 694, 1076
Sau96I	GGNCC	7 cut(s)	80, 87, 113, 519, 569, 724, 808
SchI	GAGTC	1 cut(s)	156
ScrFI	CCNGG	4 cut(s)	85, 111, 117, 687
SduI	GDGCHC	4 cut(s)	405, 625, 900, 951
SfaNI	GCATC	2 cut(s)	202, 1003
SinI	GGWCC	6 cut(s)	80, 87, 113, 519, 569, 808
SmiMI	CAYNNNNRTG	1 cut(s)	1064
SpeI	ACTAGT	2 cut(s)	664, 875
SphI	GCATGC	1 cut(s)	601
Sse9I	AATT	2 cut(s)	245, 260
SsiI	CCGC	3 cut(s)	614, 673, 994
SspMI	CTAG	5 cut(s)	276, 665, 848, 876, 902
StyD4I	CCNGG	4 cut(s)	83, 109, 115, 685
StyI	CCWWGG	1 cut(s)	727
TaaI	ACNGT	2 cut(s)	128, 516
TaiI	ACGT	1 cut(s)	631
TaqI	TCGA	1 cut(s)	498
TaqII	GACCGA	1 cut(s)	386
TasI	AATT	2 cut(s)	245, 260
TatI	WGTACW	1 cut(s)	772
TauI	GCSGC	1 cut(s)	675
TfiI	GAWTC	4 cut(s)	19, 68, 383, 396
Tru1I	TTAA	2 cut(s)	702, 999
Tru9I	TTAA	2 cut(s)	702, 999
TscAI	CASTG	1 cut(s)	521
TseFI	GTSAC	1 cut(s)	367
TseI	GCWGC	2 cut(s)	749, 1069
Tsp45I	GTSAC	1 cut(s)	367
TspDTI	ATGAA	3 cut(s)	412, 1076, 1182
TspGWI	ACGGA	1 cut(s)	489
TspRI	CASTG	1 cut(s)	521
VneI	GTGCAC	2 cut(s)	621, 947
VpaK11BI	GGWCC	6 cut(s)	80, 87, 113, 519, 569, 808
XbaI	TCTAGA	1 cut(s)	275
XceI	RCATGY	2 cut(s)	466, 601
XspI	CTAG	5 cut(s)	276, 665, 848, 876, 902

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.