FvH4_6g03410

Plant protein of unknown function (DUF868)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0004954
Physical Location & Seq
Reverse (-)
1879615 .. 1882089
2475 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g03410.t2

Sequence Viewer

Length: 912 bp
ATGAGGGATTTCCCATCTTGTTTTGGTGAAAATGGGGTTCAAGTTGCTGATTCTTCTTCTTCGTCGAATAATCATAATACTAGTAGGACTGCCCAGAATTTGGTTACTTGTATCTATCAATGCCGGTTGCGTAATCGGTCTTGCTTGATTACTGTCACATGGAGTAGGAATTTGATGGGTCAAGGCCTTAGTATTGGAATAGATGATTCTTCGAATCAGTGTCTTTGTAAGGTGGATATTAAACCTTGGTTGTTCTCCAAAAGAAGAGGGTCCAAGAGTTTAGAAGCTTATTCTAGTAAAATTGATATATATTGGGACTTTTCTTCTGCAAAATTCGGATCCGGGCCTGAACCTGTTGATGGATATTATGTGGGAATTGTGGTGGACCGGCAGATGATTCTCCTTCTTGGAGATATGAAAAAAGAAGCTTTCAAAAAGACTAGTGCCAGCCCTGCGTCTTCTAATGCTGGTTGCATTGCCAGGAGAGAGCACATTTTTGGGAAGAAGGTGTTCACCACCAAGGCTCGGTTTTGTAATGATGGTCAAGTTCATGATCTTGTAATTGAATGCGACACTGTTGGGGTCAATGATCCGTGTCTCATTGTCCGTGTGGACAGTAAGACGGTGATGCAGGTGAAGAGACTTCGGTGGAAGTTTCGGGGAAATCACACCATCTTGGTTGATGGGCTTGCAGTTGAAGTTTTCTGGGATGTGCACAATTGGCTCTTTGGTTCATCACCTGGAAGTGCTGTGTTTATGTTCAAGACATGCCTCTCAGCCGAGAAGTTGTGGTCTGGCCAACCACAATCTGATCCAAGTGCCCTGCAGTGGTCATTTTCACAGAGGTTTTCAGACAGCAAGTCACAAGGGCTAGGGTACTCGCTCATGCTGTATGCTTGGAAGAATGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF868

Protein Analysis

304

Amino Acids

33.94

Weight (kDa)

9.0

Isoelectric Point (pI)

43.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF868 PF05910 31 - 301 2e-112 Plant protein of unknown function (DUF868)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 622
Acc36I ACCTGC 1 cut(s) 622
AccB7I CCANNNNNTGG 1 cut(s) 100
AclWI GGATC 4 cut(s) 333, 346, 584, 806
AcoI YGGCCR 1 cut(s) 796
AcsI RAATTY 3 cut(s) 97, 169, 332
AfaI GTAC 1 cut(s) 878
AfiI CCNNNNNNNGG 4 cut(s) 100, 359, 525, 828
AgsI TTSAA 5 cut(s) 41, 433, 566, 698, 763
AhdI GACNNNNNGTC 1 cut(s) 859
AhlI ACTAGT 2 cut(s) 80, 440
AjnI CCWGG 2 cut(s) 479, 739
AluBI AGCT 2 cut(s) 287, 428
AluI AGCT 2 cut(s) 287, 428
Alw21I GWGCWC 2 cut(s) 492, 717
Alw26I GTCTC 2 cut(s) 602, 634
Alw44I GTGCAC 1 cut(s) 713
AlwI GGATC 4 cut(s) 333, 346, 584, 806
AoxI GGCC 3 cut(s) 184, 344, 796
ApaLI GTGCAC 1 cut(s) 713
ApoI RAATTY 3 cut(s) 97, 169, 332
Asp700I GAANNNNTTC 1 cut(s) 509
AspS9I GGNCC 3 cut(s) 270, 344, 385
AsuC2I CCSGG 1 cut(s) 343
AsuHPI GGTGA 5 cut(s) 38, 505, 637, 646, 729
AsuII TTCGAA 1 cut(s) 212
AvaII GGWCC 2 cut(s) 270, 385
BaeGI GKGCMC 2 cut(s) 717, 823
BalI TGGCCA 1 cut(s) 798
BamHI GGATCC 1 cut(s) 338
BbsI GAAGAC 1 cut(s) 450
Bbv12I GWGCWC 2 cut(s) 492, 717
BccI CCATC 6 cut(s) 22, 169, 353, 533, 677, 680
BciT130I CCWGG 2 cut(s) 481, 741
BcnI CCSGG 1 cut(s) 343
BcoDI GTCTC 2 cut(s) 602, 634
BcuI ACTAGT 2 cut(s) 80, 440
BfaI CTAG 4 cut(s) 81, 294, 441, 872
BfmI CTRYAG 1 cut(s) 824
BfuAI ACCTGC 1 cut(s) 622
Bme1390I CCNGG 3 cut(s) 343, 481, 741
Bme18I GGWCC 2 cut(s) 270, 385
BmeRI GACNNNNNGTC 1 cut(s) 859
BmgT120I GGNCC 3 cut(s) 270, 344, 385
BmiI GGNNCC 2 cut(s) 271, 340
BmrFI CCNGG 3 cut(s) 343, 481, 741
BmsI GCATC 1 cut(s) 618
BpiI GAAGAC 1 cut(s) 450
Bpu14I TTCGAA 1 cut(s) 212
BpuMI CCSGG 1 cut(s) 343
BsaJI CCNNGG 2 cut(s) 245, 519
Bsc4I CCNNNNNNNGG 4 cut(s) 100, 359, 525, 828
Bse118I RCCGGY 2 cut(s) 123, 387
Bse3DI GCAATG 1 cut(s) 474
BseBI CCWGG 2 cut(s) 481, 741
BseDI CCNNGG 2 cut(s) 245, 519
BseGI GGATG 1 cut(s) 715
BseLI CCNNNNNNNGG 4 cut(s) 100, 359, 525, 828
BseMI GCAATG 1 cut(s) 474
BseMII CTCAG 1 cut(s) 789
BseSI GKGCMC 2 cut(s) 717, 823
BshFI GGCC 3 cut(s) 186, 346, 798
BsiHKAI GWGCWC 2 cut(s) 492, 717
BsiSI CCGG 3 cut(s) 124, 342, 388
BslFI GGGAC 1 cut(s) 329
BslI CCNNNNNNNGG 4 cut(s) 100, 359, 525, 828
BsmAI GTCTC 2 cut(s) 602, 634
BsmFI GGGAC 1 cut(s) 329
BsmI GAATGC 1 cut(s) 572
BsnI GGCC 3 cut(s) 186, 346, 798
Bsp119I TTCGAA 1 cut(s) 212
Bsp1286I GDGCHC 3 cut(s) 492, 717, 823
Bsp143I GATC 4 cut(s) 338, 553, 589, 811
BspANI GGCC 3 cut(s) 186, 346, 798
BspCNI CTCAG 1 cut(s) 788
BspHI TCATGA 1 cut(s) 550
BspLI GGNNCC 2 cut(s) 271, 340
BspMAI CTGCAG 1 cut(s) 828
BspMI ACCTGC 1 cut(s) 622
BspPI GGATC 4 cut(s) 333, 346, 584, 806
BspT104I TTCGAA 1 cut(s) 212
BsrDI GCAATG 1 cut(s) 474
BsrFI RCCGGY 2 cut(s) 123, 387
BssAI RCCGGY 2 cut(s) 123, 387
BssECI CCNNGG 2 cut(s) 245, 519
BssMI GATC 4 cut(s) 338, 553, 589, 811
BssT1I CCWWGG 2 cut(s) 245, 519
Bst2UI CCWGG 2 cut(s) 481, 741
Bst4CI ACNGT 4 cut(s) 154, 577, 617, 625
Bst6I CTCTTC 2 cut(s) 259, 632
BstBI TTCGAA 1 cut(s) 212
BstC8I GCNNGC 2 cut(s) 448, 690
BstDEI CTNAG 2 cut(s) 188, 775
BstF5I GGATG 1 cut(s) 715
BstKTI GATC 4 cut(s) 341, 556, 592, 814
BstMAI GTCTC 2 cut(s) 602, 634
BstMBI GATC 4 cut(s) 338, 553, 589, 811
BstMWI GCNNNNNNNGC 2 cut(s) 452, 721
BstNI CCWGG 2 cut(s) 481, 741
BstNSI RCATGY 1 cut(s) 771
BstSCI CCNGG 3 cut(s) 341, 479, 739
BstSFI CTRYAG 1 cut(s) 824
BstSLI GKGCMC 2 cut(s) 717, 823
BstV2I GAAGAC 1 cut(s) 450
BstX2I RGATCY 1 cut(s) 338
BstYI RGATCY 1 cut(s) 338
BsuRI GGCC 3 cut(s) 186, 346, 798
BtsCI GGATG 1 cut(s) 715
BtsI GCAGTG 1 cut(s) 833
BtsIMutI CAGTG 3 cut(s) 224, 573, 833
BveI ACCTGC 1 cut(s) 622
Cac8I GCNNGC 2 cut(s) 448, 690
CciI TCATGA 1 cut(s) 550
Cfr10I RCCGGY 2 cut(s) 123, 387
Cfr13I GGNCC 3 cut(s) 270, 344, 385
CseI GACGC 1 cut(s) 444
Csp6I GTAC 1 cut(s) 877
CviAII CATG 4 cut(s) 159, 551, 768, 886
CviQI GTAC 1 cut(s) 877
DdeI CTNAG 2 cut(s) 188, 775
DpnI GATC 4 cut(s) 340, 555, 591, 813
DpnII GATC 4 cut(s) 338, 553, 589, 811
DriI GACNNNNNGTC 1 cut(s) 859
EaeI YGGCCR 1 cut(s) 796
Eam1104I CTCTTC 2 cut(s) 259, 632
Eam1105I GACNNNNNGTC 1 cut(s) 859
EarI CTCTTC 2 cut(s) 259, 632
Eco130I CCWWGG 2 cut(s) 245, 519
Eco147I AGGCCT 1 cut(s) 186
Eco47I GGWCC 2 cut(s) 270, 385
EcoRII CCWGG 2 cut(s) 479, 739
EcoT14I CCWWGG 2 cut(s) 245, 519
ErhI CCWWGG 2 cut(s) 245, 519
FaeI CATG 4 cut(s) 162, 554, 771, 889
FaqI GGGAC 1 cut(s) 329
FatI CATG 4 cut(s) 158, 550, 767, 885
FokI GGATG 1 cut(s) 722
FspBI CTAG 4 cut(s) 81, 294, 441, 872
HaeIII GGCC 3 cut(s) 186, 346, 798
HapII CCGG 3 cut(s) 124, 342, 388
HgaI GACGC 1 cut(s) 444
Hin1II CATG 4 cut(s) 162, 554, 771, 889
HindIII AAGCTT 2 cut(s) 285, 426
HinfI GANTC 4 cut(s) 50, 206, 214, 397
HpaII CCGG 3 cut(s) 124, 342, 388
HphI GGTGA 5 cut(s) 38, 505, 637, 646, 729
Hpy166II GTNNAC 4 cut(s) 385, 513, 613, 715
Hpy188I TCNGA 3 cut(s) 338, 811, 853
Hpy188III TCNNGA 2 cut(s) 551, 763
Hpy8I GTNNAC 4 cut(s) 385, 513, 613, 715
Hpy99I CGWCG 1 cut(s) 67
HpyAV CCTTC 2 cut(s) 413, 499
HpyCH4III ACNGT 4 cut(s) 154, 577, 617, 625
HpyCH4V TGCA 6 cut(s) 329, 474, 631, 692, 715, 826
HpyF10VI GCNNNNNNNGC 2 cut(s) 452, 721
HpyF3I CTNAG 2 cut(s) 188, 775
Hsp92II CATG 4 cut(s) 162, 554, 771, 889
Kzo9I GATC 4 cut(s) 338, 553, 589, 811
LweI GCATC 1 cut(s) 618
MaeI CTAG 4 cut(s) 81, 294, 441, 872
MaeIII GTNAC 3 cut(s) 103, 154, 861
MalI GATC 4 cut(s) 340, 555, 591, 813
MboI GATC 4 cut(s) 338, 553, 589, 811
MboII GAAGA 9 cut(s) 45, 48, 51, 201, 276, 315, 450, 514, 649
MfeI CAATTG 1 cut(s) 718
MflI RGATCY 1 cut(s) 338
MhlI GDGCHC 3 cut(s) 492, 717, 823
MlsI TGGCCA 1 cut(s) 798
MluCI AATT 7 cut(s) 97, 169, 300, 332, 375, 561, 718
MluNI TGGCCA 1 cut(s) 798
MnlI CCTC 3 cut(s) 260, 782, 837
Mox20I TGGCCA 1 cut(s) 798
MroXI GAANNNNTTC 1 cut(s) 509
MscI TGGCCA 1 cut(s) 798
MseI TTAA 1 cut(s) 240
Msp20I TGGCCA 1 cut(s) 798
MspI CCGG 3 cut(s) 124, 342, 388
MspR9I CCNGG 3 cut(s) 343, 481, 741
MunI CAATTG 1 cut(s) 718
Mva1269I GAATGC 1 cut(s) 572
MvaI CCWGG 2 cut(s) 481, 741
MwoI GCNNNNNNNGC 2 cut(s) 452, 721
NciI CCSGG 1 cut(s) 343
NdeII GATC 4 cut(s) 338, 553, 589, 811
NlaIII CATG 4 cut(s) 162, 554, 771, 889
NlaIV GGNNCC 2 cut(s) 271, 340
NmeAIII GCCGAG 1 cut(s) 805
NmuCI GTSAC 2 cut(s) 154, 861
NspI RCATGY 1 cut(s) 771
NspV TTCGAA 1 cut(s) 212
PagI TCATGA 1 cut(s) 550
PaqCI CACCTGC 1 cut(s) 622
PceI AGGCCT 1 cut(s) 186
PctI GAATGC 1 cut(s) 572
PdmI GAANNNNTTC 1 cut(s) 509
PfeI GAWTC 4 cut(s) 50, 206, 214, 397
PflMI CCANNNNNTGG 1 cut(s) 100
Psp6I CCWGG 2 cut(s) 479, 739
PspGI CCWGG 2 cut(s) 479, 739
PspN4I GGNNCC 2 cut(s) 271, 340
PspPI GGNCC 3 cut(s) 270, 344, 385
PstI CTGCAG 1 cut(s) 828
PsuI RGATCY 1 cut(s) 338
RsaI GTAC 1 cut(s) 878
RsaNI GTAC 1 cut(s) 877
SaqAI TTAA 1 cut(s) 240
Sau3AI GATC 4 cut(s) 338, 553, 589, 811
Sau96I GGNCC 3 cut(s) 270, 344, 385
ScrFI CCNGG 3 cut(s) 343, 481, 741
SduI GDGCHC 3 cut(s) 492, 717, 823
SetI ASST 9 cut(s) 234, 247, 289, 355, 430, 510, 636, 742, 848
SfaNI GCATC 1 cut(s) 618
SfcI CTRYAG 1 cut(s) 824
SfuI TTCGAA 1 cut(s) 212
SinI GGWCC 2 cut(s) 270, 385
SpeI ACTAGT 2 cut(s) 80, 440
Sse9I AATT 7 cut(s) 97, 169, 300, 332, 375, 561, 718
SseBI AGGCCT 1 cut(s) 186
SspMI CTAG 4 cut(s) 81, 294, 441, 872
StuI AGGCCT 1 cut(s) 186
StyD4I CCNGG 3 cut(s) 341, 479, 739
StyI CCWWGG 2 cut(s) 245, 519
TaaI ACNGT 4 cut(s) 154, 577, 617, 625
TaqI TCGA 2 cut(s) 65, 212
TaqII GACCGA 1 cut(s) 126
TasI AATT 7 cut(s) 97, 169, 300, 332, 375, 561, 718
TfiI GAWTC 4 cut(s) 50, 206, 214, 397
Tru1I TTAA 1 cut(s) 240
Tru9I TTAA 1 cut(s) 240
TscAI CASTG 3 cut(s) 224, 580, 833
TseFI GTSAC 2 cut(s) 154, 861
Tsp45I GTSAC 2 cut(s) 154, 861
TspDTI ATGAA 3 cut(s) 431, 539, 723
TspGWI ACGGA 2 cut(s) 582, 596
TspRI CASTG 3 cut(s) 224, 580, 833
Van91I CCANNNNNTGG 1 cut(s) 100
VneI GTGCAC 1 cut(s) 713
VpaK11BI GGWCC 2 cut(s) 270, 385
XapI RAATTY 3 cut(s) 97, 169, 332
XceI RCATGY 1 cut(s) 771
XmnI GAANNNNTTC 1 cut(s) 509
XspI CTAG 4 cut(s) 81, 294, 441, 872
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.