Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010048

Physical Location & Seq

Genomic Coordinates Forward (+)

1466483 .. 1468400

Gene Structure 1918 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G05170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGAGTCCGGACAATAAACTGCTTCCGAAGCGGATCATCCTTGTACGGCACGGTGAATCGGAAGGGAATCTCGACACGGCGGCGTATACAACGACGCCGGATCATAAGATCCAGTTAACGGATTCCGGTTTGCTTCAGGCGCAGGAAGCCGGAGCTCGTCTCCACGCTTTGATCTCTTCTAATCCTTCTTCACCGGAGTGGCGTGTGTACTTCTACGTTTCGCCGTACGATCGGACTCGATCTACGCTCCGGGAGATCGGACGGTCGTTCTCGCGTCGCCGTGTGATTGGTGTTCGCGAAGAATGTCGGATTAGGGAACAGGATTTTGGGAATTTTCAGGTTAAAGAGCGAATGAGAGCAACGAAAAAGGTCAGAGAGAGATTTGGCCGCTTTTTTTACCGGTTCCCGGAGGGAGAATCCGCCGCCGATGTCTTCGATCGCGTCTCCAGTTTTCTCGAGTCTCTATGGAGAGACATTGACATGAACAGACTGCACATCAACCCGTCTCATGAGCTAAACTTTGTGATTGTCTCACATGGCTTAACATCGCGTGTGTTTCTGATGAAATGGTTTAAGTGGTCAGTGGAACAGTTCGAGGGACTAAACAATCCAGGGAACAGTGAGATCAGAGTGATGGAATTAGGACAAGGCGGTGATTACAGCTTGGCGATTCATCACACAGAGGAAGAGTTAGCCACATGGGGACTGTCACCAGAGATGATTGCAGATCAAAAGTGGCGGGCTAACGCGCATAAAGGCGAATGGAAAGAAGATTGTAAGTGGTATTTTGGTGATTTCTTCGACCATATGGCAGATTCCGATAAAGAGTGCGAGACTGAGGCCACTGAAGATAGAGAAGAAGAAGAAGAAGAAGAGGGGAAAAGGGTAAATCTGCTAACGAGTTCAGAATATAGCAATGAGCCAGAGTTATACAATGGACAATGCTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0042578 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

His_Phos_1

Protein Analysis

316

Amino Acids

36.88

Weight (kDa)

5.3

Isoelectric Point (pI)

56.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
His_Phos_1	PF00300	12 - 218	1.2e-25	Histidine phosphatase superfamily (branch 1)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010048)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08940 AT3G05170
fragaria_vesca	FvH4_6g05240
malus_domestica	MD04G1210300.v1.1 MD12G1224600.v1.1 MD16G1141100.v1.1
prunus_persica	Prupe.6G331200_v2.0.a1 Prupe.6G331300_v2.0.a1
pyrus_communis	pycom04g18640 pycom12g21020
rosa_chinensis	RchiOBHm_Chr3g0453971
rosa_laevigata	RLG00000025492
rosa_multiflora	Rmu_sc0003556.1_g000033 Rmu_sc0016301.1_g000001
rosa_roxburghii	Rroxscaffold_6G00430790
rosa_rugosa	Rorug02G0652000
rosa_samantha	Rh3AG054600 Rh3BG056200 Rh3CG055400 Rh3DG056700
rosa_wichuraiana	Rw3G004190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	86
AccII	CGCG	5 cut(s)	274, 297, 441, 550, 749
AccIII	TCCGGA	1 cut(s)	7
AciI	CCGC	7 cut(s)	31, 80, 388, 420, 423, 651, 739
AclWI	GGATC	3 cut(s)	41, 103, 108
AcoI	YGGCCR	1 cut(s)	385
AcsI	RAATTY	1 cut(s)	331
AcuI	CTGAAG	2 cut(s)	119, 867
AcyI	GRCGYC	1 cut(s)	95
AfaI	GTAC	3 cut(s)	45, 209, 227
AfiI	CCNNNNNNNGG	2 cut(s)	118, 406
AgeI	ACCGGT	1 cut(s)	399
AjnI	CCWGG	1 cut(s)	610
AjuI	GAANNNNNNNTTGG	2 cut(s)	309, 341
AleI	CACNNNNGTG	1 cut(s)	196
AluBI	AGCT	3 cut(s)	155, 514, 663
AluI	AGCT	3 cut(s)	155, 514, 663
Alw21I	GWGCWC	1 cut(s)	157
Alw26I	GTCTC	7 cut(s)	164, 448, 465, 465, 510, 535, 827
AlwI	GGATC	3 cut(s)	41, 103, 108
Ama87I	CYCGRG	1 cut(s)	455
Aor13HI	TCCGGA	1 cut(s)	7
AoxI	GGCC	2 cut(s)	385, 840
ApeKI	GCWGC	1 cut(s)	945
ApoI	RAATTY	1 cut(s)	331
AsiGI	ACCGGT	1 cut(s)	399
AspLEI	GCGC	2 cut(s)	142, 751
AsuC2I	CCSGG	2 cut(s)	251, 407
AsuHPI	GGTGA	5 cut(s)	65, 183, 665, 702, 803
AvaI	CYCGRG	1 cut(s)	455
BanII	GRGCYC	1 cut(s)	157
BbsI	GAAGAC	1 cut(s)	424
Bbv12I	GWGCWC	1 cut(s)	157
BbvI	GCAGC	1 cut(s)	932
BccI	CCATC	1 cut(s)	628
BceAI	ACGGC	4 cut(s)	62, 93, 208, 264
BciT130I	CCWGG	1 cut(s)	612
BcnI	CCSGG	2 cut(s)	251, 407
BcoDI	GTCTC	7 cut(s)	164, 448, 465, 465, 510, 535, 827
BisI	GCNGC	4 cut(s)	81, 388, 423, 946
BlsI	GCNGC	4 cut(s)	82, 389, 424, 947
Bme1390I	CCNGG	3 cut(s)	251, 407, 612
BmeT110I	CYCGRG	1 cut(s)	455
BmiI	GGNNCC	1 cut(s)	404
BmrFI	CCNGG	3 cut(s)	251, 407, 612
BpiI	GAAGAC	1 cut(s)	424
BplI	GAGNNNNNCTC	2 cut(s)	144, 176
BpmI	CTGGAG	1 cut(s)	430
BpuMI	CCSGG	2 cut(s)	251, 407
BsaHI	GRCGYC	1 cut(s)	95
BsaJI	CCNNGG	1 cut(s)	611
BsaWI	WCCGGW	4 cut(s)	7, 125, 193, 399
Bsc4I	CCNNNNNNNGG	2 cut(s)	118, 406
Bse118I	RCCGGY	1 cut(s)	399
Bse1I	ACTGG	2 cut(s)	112, 447
Bse3DI	GCAATG	1 cut(s)	922
BseAI	TCCGGA	1 cut(s)	7
BseBI	CCWGG	1 cut(s)	612
BseDI	CCNNGG	1 cut(s)	611
BseGI	GGATG	1 cut(s)	36
BseLI	CCNNNNNNNGG	2 cut(s)	118, 406
BseMI	GCAATG	1 cut(s)	922
BseMII	CTCAG	1 cut(s)	828
BseNI	ACTGG	2 cut(s)	112, 447
BseXI	GCAGC	1 cut(s)	932
BsgI	GTGCAG	1 cut(s)	476
Bsh1236I	CGCG	5 cut(s)	274, 297, 441, 550, 749
Bsh1285I	CGRYCG	3 cut(s)	232, 266, 439
BshFI	GGCC	2 cut(s)	387, 842
BshTI	ACCGGT	1 cut(s)	399
BsiEI	CGRYCG	3 cut(s)	232, 266, 439
BsiHKAI	GWGCWC	1 cut(s)	157
BsiHKCI	CYCGRG	1 cut(s)	455
BsiSI	CCGG	8 cut(s)	8, 98, 126, 150, 194, 250, 400, 407
BsiWI	CGTACG	1 cut(s)	225
BslFI	GGGAC	2 cut(s)	612, 717
BslI	CCNNNNNNNGG	2 cut(s)	118, 406
BsmAI	GTCTC	7 cut(s)	164, 448, 465, 465, 510, 535, 827
BsmBI	CGTCTC	3 cut(s)	164, 448, 510
BsmFI	GGGAC	2 cut(s)	612, 717
BsnI	GGCC	2 cut(s)	387, 842
BsoBI	CYCGRG	1 cut(s)	455
Bsp1286I	GDGCHC	1 cut(s)	157
Bsp13I	TCCGGA	1 cut(s)	7
Bsp68I	TCGCGA	1 cut(s)	297
BspACI	CCGC	7 cut(s)	31, 80, 388, 420, 423, 651, 739
BspANI	GGCC	2 cut(s)	387, 842
BspCNI	CTCAG	1 cut(s)	829
BspEI	TCCGGA	1 cut(s)	7
BspFNI	CGCG	5 cut(s)	274, 297, 441, 550, 749
BspHI	TCATGA	1 cut(s)	508
BspLI	GGNNCC	1 cut(s)	404
BspPI	GGATC	3 cut(s)	41, 103, 108
BsrDI	GCAATG	1 cut(s)	922
BsrFI	RCCGGY	1 cut(s)	399
BsrI	ACTGG	2 cut(s)	112, 447
BssAI	RCCGGY	1 cut(s)	399
BssECI	CCNNGG	1 cut(s)	611
BssNAI	GTATAC	1 cut(s)	87
BssNI	GRCGYC	1 cut(s)	95
Bst1107I	GTATAC	1 cut(s)	87
Bst2UI	CCWGG	1 cut(s)	612
Bst4CI	ACNGT	5 cut(s)	53, 264, 591, 620, 708
Bst6I	CTCTTC	3 cut(s)	181, 681, 867
BstACI	GRCGYC	1 cut(s)	95
BstC8I	GCNNGC	1 cut(s)	741
BstDEI	CTNAG	1 cut(s)	837
BstF5I	GGATG	1 cut(s)	36
BstFNI	CGCG	5 cut(s)	274, 297, 441, 550, 749
BstHHI	GCGC	2 cut(s)	142, 751
BstMAI	GTCTC	7 cut(s)	164, 448, 465, 465, 510, 535, 827
BstMCI	CGRYCG	3 cut(s)	232, 266, 439
BstMWI	GCNNNNNNNGC	3 cut(s)	28, 139, 146
BstNI	CCWGG	1 cut(s)	612
BstSCI	CCNGG	3 cut(s)	249, 405, 610
BstUI	CGCG	5 cut(s)	274, 297, 441, 550, 749
BstV1I	GCAGC	1 cut(s)	932
BstV2I	GAAGAC	1 cut(s)	424
BstX2I	RGATCY	1 cut(s)	108
BstYI	RGATCY	1 cut(s)	108
BstZ17I	GTATAC	1 cut(s)	87
BsuRI	GGCC	2 cut(s)	387, 842
BtgZI	GCGATG	1 cut(s)	531
BtsCI	GGATG	1 cut(s)	36
BtsIMutI	CAGTG	3 cut(s)	588, 625, 843
BtuMI	TCGCGA	1 cut(s)	297
Cac8I	GCNNGC	1 cut(s)	741
CciI	TCATGA	1 cut(s)	508
CfoI	GCGC	2 cut(s)	142, 751
Cfr10I	RCCGGY	1 cut(s)	399
CseI	GACGC	3 cut(s)	103, 263, 430
Csp6I	GTAC	3 cut(s)	44, 208, 226
CspAI	ACCGGT	1 cut(s)	399
CviAII	CATG	4 cut(s)	481, 509, 536, 699
CviQI	GTAC	3 cut(s)	44, 208, 226
DdeI	CTNAG	1 cut(s)	837
EaeI	YGGCCR	1 cut(s)	385
Eam1104I	CTCTTC	3 cut(s)	181, 681, 867
EarI	CTCTTC	3 cut(s)	181, 681, 867
EciI	GGCGGA	1 cut(s)	409
Ecl136II	GAGCTC	1 cut(s)	155
Eco24I	GRGCYC	1 cut(s)	157
Eco53kI	GAGCTC	1 cut(s)	155
Eco57I	CTGAAG	2 cut(s)	119, 867
Eco88I	CYCGRG	1 cut(s)	455
EcoICRI	GAGCTC	1 cut(s)	155
EcoRII	CCWGG	1 cut(s)	610
EcoT38I	GRGCYC	1 cut(s)	157
Esp3I	CGTCTC	3 cut(s)	164, 448, 510
FaeI	CATG	4 cut(s)	484, 512, 539, 702
FaqI	GGGAC	2 cut(s)	612, 717
FatI	CATG	4 cut(s)	480, 508, 535, 698
FauI	CCCGC	1 cut(s)	732
FauNDI	CATATG	1 cut(s)	807
FblI	GTMKAC	1 cut(s)	86
Fnu4HI	GCNGC	4 cut(s)	81, 388, 423, 946
FokI	GGATG	1 cut(s)	23
FriOI	GRGCYC	1 cut(s)	157
Fsp4HI	GCNGC	4 cut(s)	81, 388, 423, 946
GlaI	GCGC	2 cut(s)	141, 750
GluI	GCNGC	4 cut(s)	81, 388, 423, 946
GsuI	CTGGAG	1 cut(s)	430
HaeIII	GGCC	2 cut(s)	387, 842
HapII	CCGG	8 cut(s)	8, 98, 126, 150, 194, 250, 400, 407
HgaI	GACGC	3 cut(s)	103, 263, 430
HhaI	GCGC	2 cut(s)	142, 751
Hin1I	GRCGYC	1 cut(s)	95
Hin1II	CATG	4 cut(s)	484, 512, 539, 702
Hin6I	GCGC	2 cut(s)	140, 749
HinP1I	GCGC	2 cut(s)	140, 749
HincII	GTYRAC	1 cut(s)	117
HindII	GTYRAC	1 cut(s)	117
HinfI	GANTC	9 cut(s)	4, 56, 67, 122, 235, 416, 458, 670, 815
HpaI	GTTAAC	1 cut(s)	117
HpaII	CCGG	8 cut(s)	8, 98, 126, 150, 194, 250, 400, 407
HphI	GGTGA	5 cut(s)	65, 183, 665, 702, 803
Hpy166II	GTNNAC	3 cut(s)	87, 117, 208
Hpy188III	TCNNGA	5 cut(s)	8, 71, 296, 455, 509
Hpy8I	GTNNAC	3 cut(s)	87, 117, 208
Hpy99I	CGWCG	2 cut(s)	97, 279
HpyAV	CCTTC	2 cut(s)	56, 195
HpyCH4III	ACNGT	5 cut(s)	53, 264, 591, 620, 708
HpyCH4IV	ACGT	1 cut(s)	216
HpyCH4V	TGCA	2 cut(s)	493, 725
HpyF10VI	GCNNNNNNNGC	3 cut(s)	28, 139, 146
HpyF3I	CTNAG	1 cut(s)	837
HpySE526I	ACGT	1 cut(s)	216
Hsp92I	GRCGYC	1 cut(s)	95
Hsp92II	CATG	4 cut(s)	484, 512, 539, 702
HspAI	GCGC	2 cut(s)	140, 749
Kpn2I	TCCGGA	1 cut(s)	7
KspAI	GTTAAC	1 cut(s)	117
LmnI	GCTCC	2 cut(s)	152, 252
Lsp1109I	GCAGC	1 cut(s)	932
MaeII	ACGT	1 cut(s)	216
MaeIII	GTNAC	1 cut(s)	708
MflI	RGATCY	1 cut(s)	108
MhlI	GDGCHC	1 cut(s)	157
MluCI	AATT	2 cut(s)	331, 638
MlyI	GAGTC	3 cut(s)	13, 229, 467
MmeI	TCCRAC	1 cut(s)	287
MnlI	CCTC	5 cut(s)	403, 589, 676, 832, 868
MroI	TCCGGA	1 cut(s)	7
MseI	TTAA	4 cut(s)	116, 342, 542, 573
MslI	CAYNNNNRTG	2 cut(s)	196, 479
MspI	CCGG	8 cut(s)	8, 98, 126, 150, 194, 250, 400, 407
MspR9I	CCNGG	3 cut(s)	251, 407, 612
MvaI	CCWGG	1 cut(s)	612
MvnI	CGCG	5 cut(s)	274, 297, 441, 550, 749
MwoI	GCNNNNNNNGC	3 cut(s)	28, 139, 146
NciI	CCSGG	2 cut(s)	251, 407
NdeI	CATATG	1 cut(s)	807
NlaIII	CATG	4 cut(s)	484, 512, 539, 702
NlaIV	GGNNCC	1 cut(s)	404
NmuCI	GTSAC	1 cut(s)	708
NruI	TCGCGA	1 cut(s)	297
OliI	CACNNNNGTG	1 cut(s)	196
PaeR7I	CTCGAG	1 cut(s)	455
PagI	TCATGA	1 cut(s)	508
PfeI	GAWTC	6 cut(s)	56, 67, 122, 416, 670, 815
Pfl23II	CGTACG	1 cut(s)	225
PfoI	TCCNGGA	2 cut(s)	249, 405
PinAI	ACCGGT	1 cut(s)	399
PkrI	GCNGC	4 cut(s)	82, 389, 424, 947
Ple19I	CGATCG	2 cut(s)	232, 439
PleI	GAGTC	3 cut(s)	12, 229, 466
PpsI	GAGTC	3 cut(s)	12, 229, 466
Psp124BI	GAGCTC	1 cut(s)	157
Psp6I	CCWGG	1 cut(s)	610
PspGI	CCWGG	1 cut(s)	610
PspLI	CGTACG	1 cut(s)	225
PspN4I	GGNNCC	1 cut(s)	404
PsuI	RGATCY	1 cut(s)	108
PvuI	CGATCG	2 cut(s)	232, 439
RruI	TCGCGA	1 cut(s)	297
RsaI	GTAC	3 cut(s)	45, 209, 227
RsaNI	GTAC	3 cut(s)	44, 208, 226
RseI	CAYNNNNRTG	2 cut(s)	196, 479
SacI	GAGCTC	1 cut(s)	157
SaqAI	TTAA	4 cut(s)	116, 342, 542, 573
SatI	GCNGC	4 cut(s)	81, 388, 423, 946
SchI	GAGTC	3 cut(s)	13, 229, 467
ScrFI	CCNGG	3 cut(s)	251, 407, 612
SduI	GDGCHC	1 cut(s)	157
SetI	ASST	6 cut(s)	157, 219, 342, 372, 516, 665
Sfr274I	CTCGAG	1 cut(s)	455
SlaI	CTCGAG	1 cut(s)	455
SmiMI	CAYNNNNRTG	2 cut(s)	196, 479
SmlI	CTYRAG	1 cut(s)	455
SmoI	CTYRAG	1 cut(s)	455
Sse9I	AATT	2 cut(s)	331, 638
SsiI	CCGC	7 cut(s)	31, 80, 388, 420, 423, 651, 739
SstI	GAGCTC	1 cut(s)	157
StyD4I	CCNGG	3 cut(s)	249, 405, 610
TaaI	ACNGT	5 cut(s)	53, 264, 591, 620, 708
TaiI	ACGT	1 cut(s)	219
TaqI	TCGA	6 cut(s)	72, 238, 435, 456, 594, 801
TasI	AATT	2 cut(s)	331, 638
TatI	WGTACW	1 cut(s)	207
TauI	GCSGC	3 cut(s)	83, 390, 425
TfiI	GAWTC	6 cut(s)	56, 67, 122, 416, 670, 815
Tru1I	TTAA	4 cut(s)	116, 342, 542, 573
Tru9I	TTAA	4 cut(s)	116, 342, 542, 573
TscAI	CASTG	3 cut(s)	588, 625, 850
TseFI	GTSAC	1 cut(s)	708
TseI	GCWGC	1 cut(s)	945
Tsp45I	GTSAC	1 cut(s)	708
TspDTI	ATGAA	3 cut(s)	497, 578, 662
TspGWI	ACGGA	1 cut(s)	134
TspRI	CASTG	3 cut(s)	588, 625, 850
XapI	RAATTY	1 cut(s)	331
XhoI	CTCGAG	1 cut(s)	455
XmiI	GTMKAC	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.