Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0010048

Physical Location & Seq

Genomic Coordinates Reverse (-)

10880383 .. 10880634

Gene Structure 252 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1141100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 252 bp

ATGCAGCAACAAAATAGCAAGAGCAGATTACAACTAGTTATACCGAAGCGGATAATCCTAATGCGGCACGGCGAGTCCCAATGGAATCTCGACACCGCCGTCTACACCATCACCCCCGACAACAAAATCCCACTCACCCAAGAAGACCTGGCCCAGGCCCAGTTCGTCGGGGCTAAGATCCACCGCATCGTCTCCGACGCCACTGGAGCTGACAGCCCCAACTGGCGCGTCTGCTTCTACGTCTCACCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0042578 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

His_Phos_1

Protein Analysis

84

Amino Acids

9.44

Weight (kDa)

8.98

Isoelectric Point (pI)

40.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
His_Phos_1	PF00300	18 - 67	7.4e-06	Histidine phosphatase superfamily (branch 1)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0010048)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08940 AT3G05170
fragaria_vesca	FvH4_6g05240
malus_domestica	MD04G1210300.v1.1 MD12G1224600.v1.1 MD16G1141100.v1.1
prunus_persica	Prupe.6G331200_v2.0.a1 Prupe.6G331300_v2.0.a1
pyrus_communis	pycom04g18640 pycom12g21020
rosa_chinensis	RchiOBHm_Chr3g0453971
rosa_laevigata	RLG00000025492
rosa_multiflora	Rmu_sc0003556.1_g000033 Rmu_sc0016301.1_g000001
rosa_roxburghii	Rroxscaffold_6G00430790
rosa_rugosa	Rorug02G0652000
rosa_samantha	Rh3AG054600 Rh3BG056200 Rh3CG055400 Rh3DG056700
rosa_wichuraiana	Rw3G004190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	98
AccI	GTMKAC	1 cut(s)	102
AccII	CGCG	1 cut(s)	228
AciI	CCGC	4 cut(s)	49, 64, 96, 184
AclWI	GGATC	1 cut(s)	172
AcyI	GRCGYC	1 cut(s)	198
AfiI	CCNNNNNNNGG	1 cut(s)	154
AhlI	ACTAGT	1 cut(s)	34
AjnI	CCWGG	2 cut(s)	147, 153
AluBI	AGCT	1 cut(s)	209
AluI	AGCT	1 cut(s)	209
Alw26I	GTCTC	2 cut(s)	196, 247
AlwI	GGATC	1 cut(s)	172
AoxI	GGCC	2 cut(s)	150, 156
ApeKI	GCWGC	1 cut(s)	4
AspLEI	GCGC	1 cut(s)	228
AspS9I	GGNCC	2 cut(s)	151, 157
AsuHPI	GGTGA	3 cut(s)	103, 127, 237
BbsI	GAAGAC	1 cut(s)	150
BbvI	GCAGC	1 cut(s)	16
BccI	CCATC	1 cut(s)	116
BceAI	ACGGC	2 cut(s)	83, 85
BciT130I	CCWGG	2 cut(s)	149, 155
BcoDI	GTCTC	2 cut(s)	196, 247
BcuI	ACTAGT	1 cut(s)	34
BfaI	CTAG	1 cut(s)	35
BisI	GCNGC	2 cut(s)	5, 65
BlsI	GCNGC	2 cut(s)	6, 66
Bme1390I	CCNGG	2 cut(s)	149, 155
BmgT120I	GGNCC	2 cut(s)	151, 157
BmrFI	CCNGG	2 cut(s)	149, 155
BmrI	ACTGGG	1 cut(s)	154
BmsI	GCATC	1 cut(s)	195
BmuI	ACTGGG	1 cut(s)	154
BpiI	GAAGAC	1 cut(s)	150
BpmI	CTGGAG	1 cut(s)	225
BsaHI	GRCGYC	1 cut(s)	198
BsaJI	CCNNGG	1 cut(s)	153
Bsc4I	CCNNNNNNNGG	1 cut(s)	154
Bse1I	ACTGG	3 cut(s)	160, 208, 227
BseBI	CCWGG	2 cut(s)	149, 155
BseDI	CCNNGG	1 cut(s)	153
BseLI	CCNNNNNNNGG	1 cut(s)	154
BseNI	ACTGG	3 cut(s)	160, 208, 227
BseXI	GCAGC	1 cut(s)	16
Bsh1236I	CGCG	1 cut(s)	228
BshFI	GGCC	2 cut(s)	152, 158
BslFI	GGGAC	1 cut(s)	61
BslI	CCNNNNNNNGG	1 cut(s)	154
BsmAI	GTCTC	2 cut(s)	196, 247
BsmBI	CGTCTC	2 cut(s)	196, 247
BsmFI	GGGAC	1 cut(s)	61
BsnI	GGCC	2 cut(s)	152, 158
Bsp143I	GATC	1 cut(s)	177
BspACI	CCGC	4 cut(s)	49, 64, 96, 184
BspANI	GGCC	2 cut(s)	152, 158
BspFNI	CGCG	1 cut(s)	228
BspPI	GGATC	1 cut(s)	172
BsrI	ACTGG	3 cut(s)	160, 208, 227
BssECI	CCNNGG	1 cut(s)	153
BssMI	GATC	1 cut(s)	177
BssNI	GRCGYC	1 cut(s)	198
Bst2UI	CCWGG	2 cut(s)	149, 155
BstACI	GRCGYC	1 cut(s)	198
BstDEI	CTNAG	1 cut(s)	174
BstENI	CCTNNNNNAGG	1 cut(s)	152
BstFNI	CGCG	1 cut(s)	228
BstHHI	GCGC	1 cut(s)	228
BstKTI	GATC	1 cut(s)	180
BstMAI	GTCTC	2 cut(s)	196, 247
BstMBI	GATC	1 cut(s)	177
BstMWI	GCNNNNNNNGC	1 cut(s)	206
BstNI	CCWGG	2 cut(s)	149, 155
BstSCI	CCNGG	2 cut(s)	147, 153
BstUI	CGCG	1 cut(s)	228
BstV1I	GCAGC	1 cut(s)	16
BstV2I	GAAGAC	1 cut(s)	150
BstX2I	RGATCY	1 cut(s)	177
BstYI	RGATCY	1 cut(s)	177
BsuRI	GGCC	2 cut(s)	152, 158
BtsIMutI	CAGTG	1 cut(s)	201
CfoI	GCGC	1 cut(s)	228
Cfr13I	GGNCC	2 cut(s)	151, 157
CseI	GACGC	2 cut(s)	206, 217
CviJI	RGCY	5 cut(s)	152, 158, 173, 209, 216
CviKI_1	RGCY	5 cut(s)	152, 158, 173, 209, 216
DdeI	CTNAG	1 cut(s)	174
DpnI	GATC	1 cut(s)	179
DpnII	GATC	1 cut(s)	177
DrdI	GACNNNNNNGTC	1 cut(s)	98
DseDI	GACNNNNNNGTC	1 cut(s)	98
EcoNI	CCTNNNNNAGG	1 cut(s)	152
EcoRII	CCWGG	2 cut(s)	147, 153
Esp3I	CGTCTC	2 cut(s)	196, 247
FaiI	YATR	1 cut(s)	41
FaqI	GGGAC	1 cut(s)	61
FblI	GTMKAC	1 cut(s)	102
Fnu4HI	GCNGC	2 cut(s)	5, 65
Fsp4HI	GCNGC	2 cut(s)	5, 65
FspBI	CTAG	1 cut(s)	35
GlaI	GCGC	1 cut(s)	227
GluI	GCNGC	2 cut(s)	5, 65
GsuI	CTGGAG	1 cut(s)	225
HaeIII	GGCC	2 cut(s)	152, 158
HgaI	GACGC	2 cut(s)	206, 217
HhaI	GCGC	1 cut(s)	228
Hin1I	GRCGYC	1 cut(s)	198
Hin6I	GCGC	1 cut(s)	226
HinP1I	GCGC	1 cut(s)	226
HinfI	GANTC	2 cut(s)	74, 85
HphI	GGTGA	3 cut(s)	103, 127, 237
Hpy166II	GTNNAC	1 cut(s)	103
Hpy188I	TCNGA	1 cut(s)	196
Hpy188III	TCNNGA	1 cut(s)	89
Hpy8I	GTNNAC	1 cut(s)	103
Hpy99I	CGWCG	2 cut(s)	170, 200
HpyCH4IV	ACGT	1 cut(s)	240
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	1 cut(s)	206
HpyF3I	CTNAG	1 cut(s)	174
HpySE526I	ACGT	1 cut(s)	240
Hsp92I	GRCGYC	1 cut(s)	198
HspAI	GCGC	1 cut(s)	226
Kzo9I	GATC	1 cut(s)	177
LmnI	GCTCC	1 cut(s)	206
LpnPI	CCDG	7 cut(s)	134, 140, 161, 167, 173, 189, 208
Lsp1109I	GCAGC	1 cut(s)	16
LweI	GCATC	1 cut(s)	195
MaeI	CTAG	1 cut(s)	35
MaeII	ACGT	1 cut(s)	240
MalI	GATC	1 cut(s)	179
MboI	GATC	1 cut(s)	177
MboII	GAAGA	1 cut(s)	155
MflI	RGATCY	1 cut(s)	177
MlyI	GAGTC	1 cut(s)	83
MmeI	TCCRAC	1 cut(s)	219
MseI	TTAA	1 cut(s)	250
MspR9I	CCNGG	2 cut(s)	149, 155
MvaI	CCWGG	2 cut(s)	149, 155
MvnI	CGCG	1 cut(s)	228
MwoI	GCNNNNNNNGC	1 cut(s)	206
NdeII	GATC	1 cut(s)	177
PcsI	WCGNNNNNNNCGW	1 cut(s)	96
PfeI	GAWTC	1 cut(s)	85
PkrI	GCNGC	2 cut(s)	6, 66
PleI	GAGTC	1 cut(s)	82
PpsI	GAGTC	1 cut(s)	82
Psp6I	CCWGG	2 cut(s)	147, 153
PspGI	CCWGG	2 cut(s)	147, 153
PspPI	GGNCC	2 cut(s)	151, 157
PsuI	RGATCY	1 cut(s)	177
SaqAI	TTAA	1 cut(s)	250
SatI	GCNGC	2 cut(s)	5, 65
Sau3AI	GATC	1 cut(s)	177
Sau96I	GGNCC	2 cut(s)	151, 157
SchI	GAGTC	1 cut(s)	83
ScrFI	CCNGG	2 cut(s)	149, 155
SetI	ASST	4 cut(s)	150, 211, 243, 250
SfaNI	GCATC	1 cut(s)	195
SpeI	ACTAGT	1 cut(s)	34
SsiI	CCGC	4 cut(s)	49, 64, 96, 184
SspMI	CTAG	1 cut(s)	35
StyD4I	CCNGG	2 cut(s)	147, 153
TaiI	ACGT	1 cut(s)	243
TaqI	TCGA	1 cut(s)	90
TauI	GCSGC	1 cut(s)	67
TfiI	GAWTC	1 cut(s)	85
Tru1I	TTAA	1 cut(s)	250
Tru9I	TTAA	1 cut(s)	250
TscAI	CASTG	1 cut(s)	208
TseI	GCWGC	1 cut(s)	4
TspRI	CASTG	1 cut(s)	208
XagI	CCTNNNNNAGG	1 cut(s)	152
XmiI	GTMKAC	1 cut(s)	102
XspI	CTAG	1 cut(s)	35

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.