Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003556.1

Orthogroup ID

OG0010048

Physical Location & Seq

Genomic Coordinates Forward (+)

144793 .. 146432

Gene Structure 1640 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003556.1_g000033.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

atgcgtcacgccgaatcccaaggcaatctggacatggcggcctacacgagcaccccggacaacaaaatcccgctcaccgaacagggcctggcccaggcccagctcgccggggcccaactccgccgcgtcgtctccgccgacaacgactccaaccaccccgagtggcgcgtctacttctacgtctccccttacgagcgcacccgctccacgctctcccagatcggacggtccttctcccggaaacgtgtcatcggcgtccgcgaggagtgccggataagggagcaggatttcgggaattttcaggtggaggagagaatgaaggccattaagcagacgagggagaagttcggcagattcttctatcggtttccggagggggagtccgccgctgatgtttacgatcgtgtttccagttttcttgaatctttatggagggacatagacatgaacaggcttcgccacaatccttgccatgaccttaatcttgtaattgtatcacatgggttaacatcgcgtgtcttcctcatgaagtggttcaagtggacggtagagcaattcgagcacctatacaactttggaaactgtgaatttcgagtgatgcaattaggagctggcggagagtatagcttagcagtccatcacacagaggaagagctaatagaatggggtctttcacctgaaatgatagctgaccaaaagtggcgagcccattcgggcaagggttggactgaccgttgcccctggttcattgattcattctttgacaagctagccgactctgatgacacagacagtgacgatgtttggcatgaaaccaatgacaaagttcagcaatcaaattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0042578 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

His_Phos_1

Protein Analysis

280

Amino Acids

32.83

Weight (kDa)

5.61

Isoelectric Point (pI)

41.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010048)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08940 AT3G05170
fragaria_vesca	FvH4_6g05240
malus_domestica	MD04G1210300.v1.1 MD12G1224600.v1.1 MD16G1141100.v1.1
prunus_persica	Prupe.6G331200_v2.0.a1 Prupe.6G331300_v2.0.a1
pyrus_communis	pycom04g18640 pycom12g21020
rosa_chinensis	RchiOBHm_Chr3g0453971
rosa_laevigata	RLG00000025492
rosa_multiflora	Rmu_sc0003556.1_g000033 Rmu_sc0016301.1_g000001
rosa_roxburghii	Rroxscaffold_6G00430790
rosa_rugosa	Rorug02G0652000
rosa_samantha	Rh3AG054600 Rh3BG056200 Rh3CG055400 Rh3DG056700
rosa_wichuraiana	Rw3G004190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	73, 204
AccI	GTMKAC	1 cut(s)	171
AccII	CGCG	4 cut(s)	126, 168, 261, 514
AccIII	TCCGGA	1 cut(s)	370
AcsI	RAATTY	2 cut(s)	295, 587
AcyI	GRCGYC	1 cut(s)	255
AfiI	CCNNNNNNNGG	3 cut(s)	94, 237, 277
AflIII	ACRYGT	1 cut(s)	244
AgsI	TTSAA	2 cut(s)	422, 538
AjnI	CCWGG	3 cut(s)	87, 93, 740
AluBI	AGCT	6 cut(s)	103, 611, 627, 655, 689, 769
AluI	AGCT	6 cut(s)	103, 611, 627, 655, 689, 769
Alw21I	GWGCWC	2 cut(s)	53, 564
Alw26I	GTCTC	2 cut(s)	136, 187
AlwNI	CAGNNNCTG	1 cut(s)	88
Ama87I	CYCGRG	1 cut(s)	158
Aor13HI	TCCGGA	1 cut(s)	370
AoxI	GGCC	6 cut(s)	39, 85, 90, 96, 111, 321
ApaI	GGGCCC	1 cut(s)	115
ApoI	RAATTY	2 cut(s)	295, 587
Asp700I	GAANNNNTTC	1 cut(s)	533
AspLEI	GCGC	2 cut(s)	168, 198
AspS9I	GGNCC	6 cut(s)	85, 91, 97, 111, 112, 228
AsuC2I	CCSGG	3 cut(s)	56, 109, 238
AsuHPI	GGTGA	2 cut(s)	67, 666
AsuNHI	GCTAGC	1 cut(s)	769
AvaI	CYCGRG	1 cut(s)	158
AvaII	GGWCC	1 cut(s)	228
BaeGI	GKGCMC	1 cut(s)	115
BanII	GRGCYC	2 cut(s)	115, 709
BauI	CACGAG	1 cut(s)	46
BbsI	GAAGAC	1 cut(s)	511
Bbv12I	GWGCWC	2 cut(s)	53, 564
BccI	CCATC	1 cut(s)	645
BciT130I	CCWGG	3 cut(s)	89, 95, 742
BcnI	CCSGG	3 cut(s)	56, 109, 238
BcoDI	GTCTC	2 cut(s)	136, 187
BfaI	CTAG	1 cut(s)	770
BisI	GCNGC	3 cut(s)	39, 124, 387
BlpI	GCTNAGC	1 cut(s)	628
BlsI	GCNGC	3 cut(s)	40, 125, 388
Bme1390I	CCNGG	6 cut(s)	56, 89, 95, 109, 238, 742
Bme18I	GGWCC	1 cut(s)	228
BmeT110I	CYCGRG	1 cut(s)	158
BmgT120I	GGNCC	6 cut(s)	85, 91, 97, 111, 112, 228
BmiI	GGNNCC	2 cut(s)	112, 113
BmrFI	CCNGG	6 cut(s)	56, 89, 95, 109, 238, 742
BmsI	GCATC	1 cut(s)	588
BmtI	GCTAGC	1 cut(s)	773
BpiI	GAAGAC	1 cut(s)	511
Bpu1102I	GCTNAGC	1 cut(s)	628
BpuMI	CCSGG	3 cut(s)	56, 109, 238
BsaHI	GRCGYC	1 cut(s)	255
BsaJI	CCNNGG	5 cut(s)	19, 54, 93, 108, 740
BsaWI	WCCGGW	1 cut(s)	370
BsaXI	ACNNNNNCTCC	4 cut(s)	131, 161, 365, 395
Bsc4I	CCNNNNNNNGG	3 cut(s)	94, 237, 277
Bse1I	ACTGG	1 cut(s)	411
BseAI	TCCGGA	1 cut(s)	370
BseBI	CCWGG	3 cut(s)	89, 95, 742
BseDI	CCNNGG	5 cut(s)	19, 54, 93, 108, 740
BseLI	CCNNNNNNNGG	3 cut(s)	94, 237, 277
BseNI	ACTGG	1 cut(s)	411
BseRI	GAGGAG	2 cut(s)	278, 323
BseSI	GKGCMC	1 cut(s)	115
BseYI	CCCAGC	1 cut(s)	99
Bsh1236I	CGCG	4 cut(s)	126, 168, 261, 514
Bsh1285I	CGRYCG	1 cut(s)	403
BshFI	GGCC	6 cut(s)	41, 87, 92, 98, 113, 323
BsiEI	CGRYCG	1 cut(s)	403
BsiHKAI	GWGCWC	2 cut(s)	53, 564
BsiHKCI	CYCGRG	1 cut(s)	158
BsiSI	CCGG	5 cut(s)	56, 108, 238, 271, 371
BslFI	GGGAC	1 cut(s)	449
BslI	CCNNNNNNNGG	3 cut(s)	94, 237, 277
BsmAI	GTCTC	2 cut(s)	136, 187
BsmBI	CGTCTC	2 cut(s)	136, 187
BsmFI	GGGAC	1 cut(s)	449
BsnI	GGCC	6 cut(s)	41, 87, 92, 98, 113, 323
BsoBI	CYCGRG	1 cut(s)	158
Bsp120I	GGGCCC	1 cut(s)	111
Bsp1286I	GDGCHC	4 cut(s)	53, 115, 564, 709
Bsp13I	TCCGGA	1 cut(s)	370
Bsp143I	GATC	2 cut(s)	219, 400
Bsp1720I	GCTNAGC	1 cut(s)	628
BspANI	GGCC	6 cut(s)	41, 87, 92, 98, 113, 323
BspEI	TCCGGA	1 cut(s)	370
BspFNI	CGCG	4 cut(s)	126, 168, 261, 514
BspHI	TCATGA	1 cut(s)	525
BspLI	GGNNCC	2 cut(s)	112, 113
BspOI	GCTAGC	1 cut(s)	773
BspQI	GCTCTTC	1 cut(s)	645
BsrBI	CCGCTC	2 cut(s)	73, 204
BsrI	ACTGG	1 cut(s)	411
BssECI	CCNNGG	5 cut(s)	19, 54, 93, 108, 740
BssMI	GATC	2 cut(s)	219, 400
BssNI	GRCGYC	1 cut(s)	255
BssSI	CACGAG	1 cut(s)	46
BssT1I	CCWWGG	1 cut(s)	19
Bst2BI	CACGAG	1 cut(s)	46
Bst2UI	CCWGG	3 cut(s)	89, 95, 742
Bst4CI	ACNGT	5 cut(s)	228, 547, 584, 734, 794
Bst6I	CTCTTC	1 cut(s)	645
BstACI	GRCGYC	1 cut(s)	255
BstC8I	GCNNGC	4 cut(s)	105, 613, 705, 771
BstDEI	CTNAG	1 cut(s)	628
BstENI	CCTNNNNNAGG	1 cut(s)	92
BstFNI	CGCG	4 cut(s)	126, 168, 261, 514
BstHHI	GCGC	2 cut(s)	168, 198
BstKTI	GATC	2 cut(s)	222, 403
BstMAI	GTCTC	2 cut(s)	136, 187
BstMBI	GATC	2 cut(s)	219, 400
BstMCI	CGRYCG	1 cut(s)	403
BstMWI	GCNNNNNNNGC	3 cut(s)	104, 267, 559
BstNI	CCWGG	3 cut(s)	89, 95, 742
BstSCI	CCNGG	6 cut(s)	54, 87, 93, 107, 236, 740
BstSLI	GKGCMC	1 cut(s)	115
BstUI	CGCG	4 cut(s)	126, 168, 261, 514
BstV2I	GAAGAC	1 cut(s)	511
BsuRI	GGCC	6 cut(s)	41, 87, 92, 98, 113, 323
BtgZI	GCGATG	1 cut(s)	495
BtsIMutI	CAGTG	1 cut(s)	799
Cac8I	GCNNGC	4 cut(s)	105, 613, 705, 771
CaiI	CAGNNNCTG	1 cut(s)	88
CciI	TCATGA	1 cut(s)	525
CfoI	GCGC	2 cut(s)	168, 198
Cfr13I	GGNCC	6 cut(s)	85, 91, 97, 111, 112, 228
CseI	GACGC	3 cut(s)	115, 157, 244
CspCI	CAANNNNNGTGG	2 cut(s)	449, 484
CviAII	CATG	6 cut(s)	34, 445, 473, 500, 526, 809
DdeI	CTNAG	1 cut(s)	628
DpnI	GATC	2 cut(s)	221, 402
DpnII	GATC	2 cut(s)	219, 400
Eam1104I	CTCTTC	1 cut(s)	645
EarI	CTCTTC	1 cut(s)	645
EciI	GGCGGA	4 cut(s)	110, 124, 373, 630
Eco130I	CCWWGG	1 cut(s)	19
Eco24I	GRGCYC	2 cut(s)	115, 709
Eco47I	GGWCC	1 cut(s)	228
Eco88I	CYCGRG	1 cut(s)	158
EcoNI	CCTNNNNNAGG	1 cut(s)	92
EcoO109I	RGGNCCY	2 cut(s)	85, 111
EcoRII	CCWGG	3 cut(s)	87, 93, 740
EcoT14I	CCWWGG	1 cut(s)	19
EcoT38I	GRGCYC	2 cut(s)	115, 709
ErhI	CCWWGG	1 cut(s)	19
Esp3I	CGTCTC	2 cut(s)	136, 187
FaeI	CATG	6 cut(s)	37, 448, 476, 503, 529, 812
FaqI	GGGAC	1 cut(s)	449
FatI	CATG	6 cut(s)	33, 444, 472, 499, 525, 808
FauI	CCCGC	2 cut(s)	78, 209
FblI	GTMKAC	1 cut(s)	171
Fnu4HI	GCNGC	3 cut(s)	39, 124, 387
FriOI	GRGCYC	2 cut(s)	115, 709
Fsp4HI	GCNGC	3 cut(s)	39, 124, 387
FspBI	CTAG	1 cut(s)	770
GlaI	GCGC	2 cut(s)	167, 197
GluI	GCNGC	3 cut(s)	39, 124, 387
GsaI	CCCAGC	1 cut(s)	103
HaeIII	GGCC	6 cut(s)	41, 87, 92, 98, 113, 323
HapII	CCGG	5 cut(s)	56, 108, 238, 271, 371
HgaI	GACGC	3 cut(s)	115, 157, 244
HhaI	GCGC	2 cut(s)	168, 198
Hin1I	GRCGYC	1 cut(s)	255
Hin1II	CATG	6 cut(s)	37, 448, 476, 503, 529, 812
Hin6I	GCGC	2 cut(s)	166, 196
HinP1I	GCGC	2 cut(s)	166, 196
HincII	GTYRAC	1 cut(s)	507
HindII	GTYRAC	1 cut(s)	507
HinfI	GANTC	7 cut(s)	14, 146, 354, 380, 422, 752, 776
HpaI	GTTAAC	1 cut(s)	507
HpaII	CCGG	5 cut(s)	56, 108, 238, 271, 371
HphI	GGTGA	2 cut(s)	67, 666
Hpy166II	GTNNAC	4 cut(s)	172, 397, 507, 543
Hpy188I	TCNGA	2 cut(s)	224, 781
Hpy188III	TCNNGA	5 cut(s)	29, 292, 371, 419, 526
Hpy8I	GTNNAC	4 cut(s)	172, 397, 507, 543
Hpy99I	CGWCG	1 cut(s)	131
HpyAV	CCTTC	2 cut(s)	241, 313
HpyCH4III	ACNGT	5 cut(s)	228, 547, 584, 734, 794
HpyCH4IV	ACGT	2 cut(s)	180, 244
HpyCH4V	TGCA	1 cut(s)	601
HpyF10VI	GCNNNNNNNGC	3 cut(s)	104, 267, 559
HpyF3I	CTNAG	1 cut(s)	628
HpySE526I	ACGT	2 cut(s)	180, 244
Hsp92I	GRCGYC	1 cut(s)	255
Hsp92II	CATG	6 cut(s)	37, 448, 476, 503, 529, 812
HspAI	GCGC	2 cut(s)	166, 196
Kpn2I	TCCGGA	1 cut(s)	370
KspAI	GTTAAC	1 cut(s)	507
Kzo9I	GATC	2 cut(s)	219, 400
LguI	GCTCTTC	1 cut(s)	645
LmnI	GCTCC	3 cut(s)	209, 280, 608
LweI	GCATC	1 cut(s)	588
MaeI	CTAG	1 cut(s)	770
MaeII	ACGT	2 cut(s)	180, 244
MaeIII	GTNAC	2 cut(s)	5, 794
MalI	GATC	2 cut(s)	221, 402
MbiI	CCGCTC	2 cut(s)	73, 204
MboI	GATC	2 cut(s)	219, 400
MboII	GAAGA	3 cut(s)	349, 511, 662
MhlI	GDGCHC	4 cut(s)	53, 115, 564, 709
MluCI	AATT	6 cut(s)	295, 489, 554, 587, 602, 838
MlyI	GAGTC	3 cut(s)	140, 389, 770
MmeI	TCCRAC	2 cut(s)	174, 704
MnlI	CCTC	7 cut(s)	256, 301, 330, 367, 426, 533, 640
MroI	TCCGGA	1 cut(s)	370
MroXI	GAANNNNTTC	1 cut(s)	533
MseI	TTAA	3 cut(s)	327, 480, 506
MslI	CAYNNNNRTG	1 cut(s)	443
MspA1I	CMGCKG	1 cut(s)	389
MspI	CCGG	5 cut(s)	56, 108, 238, 271, 371
MspR9I	CCNGG	6 cut(s)	56, 89, 95, 109, 238, 742
MvaI	CCWGG	3 cut(s)	89, 95, 742
MvnI	CGCG	4 cut(s)	126, 168, 261, 514
MwoI	GCNNNNNNNGC	3 cut(s)	104, 267, 559
NciI	CCSGG	3 cut(s)	56, 109, 238
NdeII	GATC	2 cut(s)	219, 400
NheI	GCTAGC	1 cut(s)	769
NlaIII	CATG	6 cut(s)	37, 448, 476, 503, 529, 812
NlaIV	GGNNCC	2 cut(s)	112, 113
NmuCI	GTSAC	2 cut(s)	5, 794
PagI	TCATGA	1 cut(s)	525
PciSI	GCTCTTC	1 cut(s)	645
PcsI	WCGNNNNNNNCGW	2 cut(s)	135, 258
PdmI	GAANNNNTTC	1 cut(s)	533
PfeI	GAWTC	4 cut(s)	14, 354, 422, 752
PfoI	TCCNGGA	1 cut(s)	236
PkrI	GCNGC	3 cut(s)	40, 125, 388
Ple19I	CGATCG	1 cut(s)	403
PleI	GAGTC	3 cut(s)	140, 388, 770
PpsI	GAGTC	3 cut(s)	140, 388, 770
Psp6I	CCWGG	3 cut(s)	87, 93, 740
PspFI	CCCAGC	1 cut(s)	99
PspGI	CCWGG	3 cut(s)	87, 93, 740
PspN4I	GGNNCC	2 cut(s)	112, 113
PspOMI	GGGCCC	1 cut(s)	111
PspPI	GGNCC	6 cut(s)	85, 91, 97, 111, 112, 228
PstNI	CAGNNNCTG	1 cut(s)	88
PvuI	CGATCG	1 cut(s)	403
RseI	CAYNNNNRTG	1 cut(s)	443
SapI	GCTCTTC	1 cut(s)	645
SaqAI	TTAA	3 cut(s)	327, 480, 506
SatI	GCNGC	3 cut(s)	39, 124, 387
Sau3AI	GATC	2 cut(s)	219, 400
Sau96I	GGNCC	6 cut(s)	85, 91, 97, 111, 112, 228
SchI	GAGTC	3 cut(s)	140, 389, 770
ScrFI	CCNGG	6 cut(s)	56, 89, 95, 109, 238, 742
SduI	GDGCHC	4 cut(s)	53, 115, 564, 709
SfaNI	GCATC	1 cut(s)	588
SinI	GGWCC	1 cut(s)	228
SmiMI	CAYNNNNRTG	1 cut(s)	443
Sse9I	AATT	6 cut(s)	295, 489, 554, 587, 602, 838
SspMI	CTAG	1 cut(s)	770
StyD4I	CCNGG	6 cut(s)	54, 87, 93, 107, 236, 740
StyI	CCWWGG	1 cut(s)	19
TaaI	ACNGT	5 cut(s)	228, 547, 584, 734, 794
TaiI	ACGT	2 cut(s)	183, 247
TaqI	TCGA	2 cut(s)	558, 592
TasI	AATT	6 cut(s)	295, 489, 554, 587, 602, 838
TauI	GCSGC	3 cut(s)	41, 126, 389
TfiI	GAWTC	4 cut(s)	14, 354, 422, 752
Tru1I	TTAA	3 cut(s)	327, 480, 506
Tru9I	TTAA	3 cut(s)	327, 480, 506
TscAI	CASTG	1 cut(s)	799
TseFI	GTSAC	2 cut(s)	5, 794
Tsp45I	GTSAC	2 cut(s)	5, 794
TspDTI	ATGAA	6 cut(s)	332, 461, 542, 736, 744, 825
TspRI	CASTG	1 cut(s)	799
VpaK11BI	GGWCC	1 cut(s)	228
XagI	CCTNNNNNAGG	1 cut(s)	92
XapI	RAATTY	2 cut(s)	295, 587
XmiI	GTMKAC	1 cut(s)	171
XmnI	GAANNNNTTC	1 cut(s)	533
XspI	CTAG	1 cut(s)	770

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.