Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0010048

Physical Location & Seq

Genomic Coordinates Reverse (-)

28882025 .. 28884452

Gene Structure 2428 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G331200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGCAGCAGCAAAATTGCAACAGCAAACCGCAGCCAGTTCTTCCCAAGCGGATAATCTTAATGCGGCACGGTGAGTCTCAGGCCAATATAGACCTCGCCACCTACTCCACCACACCCCACAACAAAATCCCACTAACGGAGGTGGGCCTGGCCCAGGCCCACCTCGCCGGCGCCCACCTCCACCGCGTCATCTCCGACATCGACACCAACAGCCCCAACTGGCGCGTCTACTTCTACGTCTCTCCCTACGAGAGGACGCGCTCCACGCTTTGTCAGATCGGACGGTCCTTCTCCCGGACACGTGTCATCGGCGTCCGCGAGGAGTGCCGGCTACGGGAGCAGGACTTCGGCAACTTTCGATCGCAGGTTCGGATCAAGGCCATTAAGGAGACCAAGGAGAAGTTTGGCCGCTTCTTCTTTCGGAATCCGGAGGGAGAGTCCGCCGCTGATGTCTACGATCGTGTTTCAAGTTTTCTTGAATCATTATGGAGGGACATTGACATGAACAGGCTTCGTCATGACCCTTGCCATGACCTCAATCTTATAATAATATCACACGGGTTAACGGCACGCGTCTTCCTCATGAAGTGGTTCAAGTGGACGGTTGAGCAATTCGAGCACCTAAACAATCTTGGAAATTGCGAATTTCAAGTGATGCAATTAGGAAAGGGCGGAGAATACAGCTTAGCAATCCATCACAGTGAGGAAGAACTAGTAGAATGGGGTCTCTCCCCTGAAATGATAGCTGACCAAAAGTGGCGAGCCCATGCCAACAGGGGTGATTGGAATGAGCGTTGCCCCTGGTACCTTGATACTTTTTTCAACCGTCTAGCTGACTCGGAAGACAGCGGAGAAAGTGAAGACATTTGGCATGAAACTGATGAAAAGATTCGGCAATCAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0042578 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

His_Phos_1

Protein Analysis

302

Amino Acids

35.3

Weight (kDa)

6.24

Isoelectric Point (pI)

42.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010048)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08940 AT3G05170
fragaria_vesca	FvH4_6g05240
malus_domestica	MD04G1210300.v1.1 MD12G1224600.v1.1 MD16G1141100.v1.1
prunus_persica	Prupe.6G331200_v2.0.a1 Prupe.6G331300_v2.0.a1
pyrus_communis	pycom04g18640 pycom12g21020
rosa_chinensis	RchiOBHm_Chr3g0453971
rosa_laevigata	RLG00000025492
rosa_multiflora	Rmu_sc0003556.1_g000033 Rmu_sc0016301.1_g000001
rosa_roxburghii	Rroxscaffold_6G00430790
rosa_rugosa	Rorug02G0652000
rosa_samantha	Rh3AG054600 Rh3BG056200 Rh3CG055400 Rh3DG056700
rosa_wichuraiana	Rw3G004190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	545
Acc36I	ACCTGC	1 cut(s)	355
Acc65I	GGTACC	1 cut(s)	804
AccB1I	GGYRCC	2 cut(s)	170, 804
AccI	GTMKAC	2 cut(s)	228, 453
AccII	CGCG	5 cut(s)	186, 225, 259, 318, 573
AccIII	TCCGGA	1 cut(s)	427
AclWI	GGATC	1 cut(s)	380
AcoI	YGGCCR	1 cut(s)	406
AcsI	RAATTY	1 cut(s)	644
AcvI	CACGTG	1 cut(s)	302
AcyI	GRCGYC	2 cut(s)	171, 312
AfaI	GTAC	1 cut(s)	806
AfiI	CCNNNNNNNGG	5 cut(s)	136, 154, 252, 294, 334
AflIII	ACRYGT	3 cut(s)	299, 301, 571
AgsI	TTSAA	5 cut(s)	468, 479, 595, 650, 823
AhlI	ACTAGT	1 cut(s)	712
AjnI	CCWGG	3 cut(s)	147, 153, 800
AluBI	AGCT	3 cut(s)	684, 746, 833
AluI	AGCT	3 cut(s)	684, 746, 833
Alw21I	GWGCWC	1 cut(s)	621
Alw26I	GTCTC	4 cut(s)	81, 244, 383, 731
AlwI	GGATC	1 cut(s)	380
Aor13HI	TCCGGA	1 cut(s)	427
AoxI	GGCC	6 cut(s)	81, 145, 150, 156, 378, 406
ApeKI	GCWGC	3 cut(s)	4, 7, 31
ApoI	RAATTY	1 cut(s)	644
Asp700I	GAANNNNTTC	2 cut(s)	590, 888
Asp718I	GGTACC	1 cut(s)	804
AspLEI	GCGC	3 cut(s)	173, 225, 261
AspS9I	GGNCC	4 cut(s)	145, 151, 157, 285
AsuC2I	CCSGG	1 cut(s)	295
AsuHPI	GGTGA	2 cut(s)	83, 791
AvaII	GGWCC	1 cut(s)	285
BanI	GGYRCC	2 cut(s)	170, 804
BanII	GRGCYC	1 cut(s)	766
BbrPI	CACGTG	1 cut(s)	302
BbsI	GAAGAC	3 cut(s)	568, 849, 867
Bbv12I	GWGCWC	1 cut(s)	621
BbvI	GCAGC	3 cut(s)	16, 19, 43
BccI	CCATC	1 cut(s)	702
BceAI	ACGGC	1 cut(s)	582
BciT130I	CCWGG	3 cut(s)	149, 155, 802
BcnI	CCSGG	1 cut(s)	295
BcoDI	GTCTC	4 cut(s)	81, 244, 383, 731
BcuI	ACTAGT	1 cut(s)	712
BfaI	CTAG	2 cut(s)	713, 830
BfoI	RGCGCY	1 cut(s)	174
BfuAI	ACCTGC	1 cut(s)	355
BisI	GCNGC	6 cut(s)	5, 8, 32, 65, 409, 444
BlpI	GCTNAGC	1 cut(s)	685
BlsI	GCNGC	6 cut(s)	6, 9, 33, 66, 410, 445
Bme1390I	CCNGG	4 cut(s)	149, 155, 295, 802
Bme18I	GGWCC	1 cut(s)	285
BmgT120I	GGNCC	4 cut(s)	145, 151, 157, 285
BmiI	GGNNCC	2 cut(s)	172, 806
BmrFI	CCNGG	4 cut(s)	149, 155, 295, 802
BmsI	GCATC	1 cut(s)	645
BoxI	GACNNNNGTC	1 cut(s)	302
BpiI	GAAGAC	3 cut(s)	568, 849, 867
Bpu1102I	GCTNAGC	1 cut(s)	685
BpuMI	CCSGG	1 cut(s)	295
BsaAI	YACGTR	1 cut(s)	302
BsaHI	GRCGYC	2 cut(s)	171, 312
BsaI	GGTCTC	2 cut(s)	383, 731
BsaJI	CCNNGG	3 cut(s)	153, 393, 800
BsaWI	WCCGGW	1 cut(s)	427
BsaXI	ACNNNNNCTCC	2 cut(s)	422, 452
Bsc4I	CCNNNNNNNGG	5 cut(s)	136, 154, 252, 294, 334
Bse118I	RCCGGY	2 cut(s)	167, 327
Bse1I	ACTGG	2 cut(s)	35, 224
BseAI	TCCGGA	1 cut(s)	427
BseBI	CCWGG	3 cut(s)	149, 155, 802
BseDI	CCNNGG	3 cut(s)	153, 393, 800
BseLI	CCNNNNNNNGG	5 cut(s)	136, 154, 252, 294, 334
BseMII	CTCAG	1 cut(s)	92
BseNI	ACTGG	2 cut(s)	35, 224
BseRI	GAGGAG	1 cut(s)	335
BseXI	GCAGC	3 cut(s)	16, 19, 43
Bsh1236I	CGCG	5 cut(s)	186, 225, 259, 318, 573
Bsh1285I	CGRYCG	2 cut(s)	362, 460
BshFI	GGCC	6 cut(s)	83, 147, 152, 158, 380, 408
BshNI	GGYRCC	2 cut(s)	170, 804
BsiEI	CGRYCG	2 cut(s)	362, 460
BsiHKAI	GWGCWC	1 cut(s)	621
BsiSI	CCGG	4 cut(s)	168, 295, 328, 428
BslFI	GGGAC	1 cut(s)	506
BslI	CCNNNNNNNGG	5 cut(s)	136, 154, 252, 294, 334
BsmAI	GTCTC	4 cut(s)	81, 244, 383, 731
BsmBI	CGTCTC	1 cut(s)	244
BsmFI	GGGAC	1 cut(s)	506
BsnI	GGCC	6 cut(s)	83, 147, 152, 158, 380, 408
Bso31I	GGTCTC	2 cut(s)	383, 731
Bsp1286I	GDGCHC	2 cut(s)	621, 766
Bsp13I	TCCGGA	1 cut(s)	427
Bsp143I	GATC	4 cut(s)	276, 359, 372, 457
Bsp1720I	GCTNAGC	1 cut(s)	685
BspANI	GGCC	6 cut(s)	83, 147, 152, 158, 380, 408
BspCNI	CTCAG	1 cut(s)	91
BspEI	TCCGGA	1 cut(s)	427
BspFNI	CGCG	5 cut(s)	186, 225, 259, 318, 573
BspHI	TCATGA	2 cut(s)	517, 582
BspLI	GGNNCC	2 cut(s)	172, 806
BspMI	ACCTGC	1 cut(s)	355
BspPI	GGATC	1 cut(s)	380
BspT107I	GGYRCC	2 cut(s)	170, 804
BspTNI	GGTCTC	2 cut(s)	383, 731
BsrFI	RCCGGY	2 cut(s)	167, 327
BsrI	ACTGG	2 cut(s)	35, 224
BssAI	RCCGGY	2 cut(s)	167, 327
BssECI	CCNNGG	3 cut(s)	153, 393, 800
BssMI	GATC	4 cut(s)	276, 359, 372, 457
BssNI	GRCGYC	2 cut(s)	171, 312
BssT1I	CCWWGG	1 cut(s)	393
Bst2UI	CCWGG	3 cut(s)	149, 155, 802
Bst4CI	ACNGT	5 cut(s)	71, 285, 604, 701, 827
BstACI	GRCGYC	2 cut(s)	171, 312
BstBAI	YACGTR	1 cut(s)	302
BstC8I	GCNNGC	4 cut(s)	169, 329, 571, 762
BstDEI	CTNAG	2 cut(s)	78, 685
BstENI	CCTNNNNNAGG	2 cut(s)	152, 250
BstFNI	CGCG	5 cut(s)	186, 225, 259, 318, 573
BstH2I	RGCGCY	1 cut(s)	174
BstHHI	GCGC	3 cut(s)	173, 225, 261
BstKTI	GATC	4 cut(s)	279, 362, 375, 460
BstMAI	GTCTC	4 cut(s)	81, 244, 383, 731
BstMBI	GATC	4 cut(s)	276, 359, 372, 457
BstMCI	CGRYCG	2 cut(s)	362, 460
BstMWI	GCNNNNNNNGC	5 cut(s)	164, 265, 324, 337, 616
BstNI	CCWGG	3 cut(s)	149, 155, 802
BstPAI	GACNNNNGTC	1 cut(s)	302
BstSCI	CCNGG	4 cut(s)	147, 153, 293, 800
BstUI	CGCG	5 cut(s)	186, 225, 259, 318, 573
BstV1I	GCAGC	3 cut(s)	16, 19, 43
BstV2I	GAAGAC	3 cut(s)	568, 849, 867
BsuRI	GGCC	6 cut(s)	83, 147, 152, 158, 380, 408
BtsIMutI	CAGTG	1 cut(s)	706
BveI	ACCTGC	1 cut(s)	355
Cac8I	GCNNGC	4 cut(s)	169, 329, 571, 762
CciI	TCATGA	2 cut(s)	517, 582
CfoI	GCGC	3 cut(s)	173, 225, 261
Cfr10I	RCCGGY	2 cut(s)	167, 327
Cfr13I	GGNCC	4 cut(s)	145, 151, 157, 285
CseI	GACGC	5 cut(s)	175, 214, 265, 301, 562
Csp6I	GTAC	1 cut(s)	805
CviAII	CATG	6 cut(s)	502, 518, 530, 583, 767, 872
CviQI	GTAC	1 cut(s)	805
DdeI	CTNAG	2 cut(s)	78, 685
DinI	GGCGCC	1 cut(s)	172
DpnI	GATC	4 cut(s)	278, 361, 374, 459
DpnII	GATC	4 cut(s)	276, 359, 372, 457
EaeI	YGGCCR	1 cut(s)	406
EciI	GGCGGA	2 cut(s)	430, 687
Eco130I	CCWWGG	1 cut(s)	393
Eco24I	GRGCYC	1 cut(s)	766
Eco31I	GGTCTC	2 cut(s)	383, 731
Eco47I	GGWCC	1 cut(s)	285
Eco72I	CACGTG	1 cut(s)	302
EcoNI	CCTNNNNNAGG	2 cut(s)	152, 250
EcoRII	CCWGG	3 cut(s)	147, 153, 800
EcoT14I	CCWWGG	1 cut(s)	393
EcoT38I	GRGCYC	1 cut(s)	766
EgeI	GGCGCC	1 cut(s)	172
EheI	GGCGCC	1 cut(s)	172
ErhI	CCWWGG	1 cut(s)	393
Esp3I	CGTCTC	1 cut(s)	244
FaeI	CATG	6 cut(s)	505, 521, 533, 586, 770, 875
FaiI	YATR	9 cut(s)	89, 487, 503, 519, 531, 545, 584, 768, 873
FaqI	GGGAC	1 cut(s)	506
FatI	CATG	6 cut(s)	501, 517, 529, 582, 766, 871
FblI	GTMKAC	2 cut(s)	228, 453
Fnu4HI	GCNGC	6 cut(s)	5, 8, 32, 65, 409, 444
FriOI	GRGCYC	1 cut(s)	766
Fsp4HI	GCNGC	6 cut(s)	5, 8, 32, 65, 409, 444
FspBI	CTAG	2 cut(s)	713, 830
GlaI	GCGC	3 cut(s)	172, 224, 260
GluI	GCNGC	6 cut(s)	5, 8, 32, 65, 409, 444
HaeII	RGCGCY	1 cut(s)	174
HaeIII	GGCC	6 cut(s)	83, 147, 152, 158, 380, 408
HapII	CCGG	4 cut(s)	168, 295, 328, 428
HgaI	GACGC	5 cut(s)	175, 214, 265, 301, 562
HhaI	GCGC	3 cut(s)	173, 225, 261
Hin1I	GRCGYC	2 cut(s)	171, 312
Hin1II	CATG	6 cut(s)	505, 521, 533, 586, 770, 875
Hin6I	GCGC	3 cut(s)	171, 223, 259
HinP1I	GCGC	3 cut(s)	171, 223, 259
HincII	GTYRAC	1 cut(s)	564
HindII	GTYRAC	1 cut(s)	564
HinfI	GANTC	6 cut(s)	74, 424, 437, 479, 836, 889
HpaI	GTTAAC	1 cut(s)	564
HpaII	CCGG	4 cut(s)	168, 295, 328, 428
HphI	GGTGA	2 cut(s)	83, 791
Hpy166II	GTNNAC	4 cut(s)	229, 454, 564, 600
Hpy188I	TCNGA	6 cut(s)	196, 276, 281, 372, 423, 841
Hpy188III	TCNNGA	4 cut(s)	428, 476, 518, 583
Hpy8I	GTNNAC	4 cut(s)	229, 454, 564, 600
HpyAV	CCTTC	1 cut(s)	298
HpyCH4III	ACNGT	5 cut(s)	71, 285, 604, 701, 827
HpyCH4IV	ACGT	2 cut(s)	237, 301
HpyCH4V	TGCA	3 cut(s)	4, 18, 658
HpyF10VI	GCNNNNNNNGC	5 cut(s)	164, 265, 324, 337, 616
HpyF3I	CTNAG	2 cut(s)	78, 685
HpySE526I	ACGT	2 cut(s)	237, 301
Hsp92I	GRCGYC	2 cut(s)	171, 312
Hsp92II	CATG	6 cut(s)	505, 521, 533, 586, 770, 875
HspAI	GCGC	3 cut(s)	171, 223, 259
KasI	GGCGCC	1 cut(s)	170
Kpn2I	TCCGGA	1 cut(s)	427
KpnI	GGTACC	1 cut(s)	808
KroI	GCCGGC	2 cut(s)	167, 327
KroNI	GCCGGC	2 cut(s)	169, 329
KspAI	GTTAAC	1 cut(s)	564
Kzo9I	GATC	4 cut(s)	276, 359, 372, 457
LmnI	GCTCC	2 cut(s)	266, 337
Lsp1109I	GCAGC	3 cut(s)	16, 19, 43
LweI	GCATC	1 cut(s)	645
MaeI	CTAG	2 cut(s)	713, 830
MaeII	ACGT	2 cut(s)	237, 301
MalI	GATC	4 cut(s)	278, 361, 374, 459
MboI	GATC	4 cut(s)	276, 359, 372, 457
MboII	GAAGA	6 cut(s)	32, 406, 568, 719, 854, 872
MhlI	GDGCHC	2 cut(s)	621, 766
MluCI	AATT	6 cut(s)	13, 611, 637, 644, 659, 901
MluI	ACGCGT	1 cut(s)	571
Mly113I	GGCGCC	1 cut(s)	171
MlyI	GAGTC	3 cut(s)	83, 446, 830
MmeI	TCCRAC	1 cut(s)	219
MreI	CGCCGGCG	1 cut(s)	167
MroI	TCCGGA	1 cut(s)	427
MroNI	GCCGGC	2 cut(s)	167, 327
MroXI	GAANNNNTTC	2 cut(s)	590, 888
MseI	TTAA	3 cut(s)	59, 384, 563
MslI	CAYNNNNRTG	2 cut(s)	500, 699
MspA1I	CMGCKG	2 cut(s)	446, 849
MspI	CCGG	4 cut(s)	168, 295, 328, 428
MspR9I	CCNGG	4 cut(s)	149, 155, 295, 802
MvaI	CCWGG	3 cut(s)	149, 155, 802
MvnI	CGCG	5 cut(s)	186, 225, 259, 318, 573
MwoI	GCNNNNNNNGC	5 cut(s)	164, 265, 324, 337, 616
NaeI	GCCGGC	2 cut(s)	169, 329
NarI	GGCGCC	1 cut(s)	171
NciI	CCSGG	1 cut(s)	295
NdeII	GATC	4 cut(s)	276, 359, 372, 457
NgoMIV	GCCGGC	2 cut(s)	167, 327
NlaIII	CATG	6 cut(s)	505, 521, 533, 586, 770, 875
NlaIV	GGNNCC	2 cut(s)	172, 806
PagI	TCATGA	2 cut(s)	517, 582
PcsI	WCGNNNNNNNCGW	1 cut(s)	315
PdiI	GCCGGC	2 cut(s)	169, 329
PdmI	GAANNNNTTC	2 cut(s)	590, 888
PfeI	GAWTC	3 cut(s)	424, 479, 889
PfoI	TCCNGGA	1 cut(s)	293
PkrI	GCNGC	6 cut(s)	6, 9, 33, 66, 410, 445
Ple19I	CGATCG	2 cut(s)	362, 460
PleI	GAGTC	3 cut(s)	82, 445, 830
PluTI	GGCGCC	1 cut(s)	174
PmaCI	CACGTG	1 cut(s)	302
PmlI	CACGTG	1 cut(s)	302
PpsI	GAGTC	3 cut(s)	82, 445, 830
Ppu21I	YACGTR	1 cut(s)	302
PshAI	GACNNNNGTC	1 cut(s)	302
PsiI	TTATAA	1 cut(s)	545
Psp6I	CCWGG	3 cut(s)	147, 153, 800
PspCI	CACGTG	1 cut(s)	302
PspGI	CCWGG	3 cut(s)	147, 153, 800
PspN4I	GGNNCC	2 cut(s)	172, 806
PspPI	GGNCC	4 cut(s)	145, 151, 157, 285
PvuI	CGATCG	2 cut(s)	362, 460
RsaI	GTAC	1 cut(s)	806
RsaNI	GTAC	1 cut(s)	805
RseI	CAYNNNNRTG	2 cut(s)	500, 699
SaqAI	TTAA	3 cut(s)	59, 384, 563
SatI	GCNGC	6 cut(s)	5, 8, 32, 65, 409, 444
Sau3AI	GATC	4 cut(s)	276, 359, 372, 457
Sau96I	GGNCC	4 cut(s)	145, 151, 157, 285
SchI	GAGTC	3 cut(s)	83, 446, 830
ScrFI	CCNGG	4 cut(s)	149, 155, 295, 802
SduI	GDGCHC	2 cut(s)	621, 766
SfaNI	GCATC	1 cut(s)	645
SfoI	GGCGCC	1 cut(s)	172
SgrAI	CRCCGGYG	1 cut(s)	167
SinI	GGWCC	1 cut(s)	285
SmiMI	CAYNNNNRTG	2 cut(s)	500, 699
SpeI	ACTAGT	1 cut(s)	712
Sse9I	AATT	6 cut(s)	13, 611, 637, 644, 659, 901
SspDI	GGCGCC	1 cut(s)	170
SspMI	CTAG	2 cut(s)	713, 830
StyD4I	CCNGG	4 cut(s)	147, 153, 293, 800
StyI	CCWWGG	1 cut(s)	393
TaaI	ACNGT	5 cut(s)	71, 285, 604, 701, 827
TaiI	ACGT	2 cut(s)	240, 304
TaqI	TCGA	3 cut(s)	201, 358, 615
TasI	AATT	6 cut(s)	13, 611, 637, 644, 659, 901
TauI	GCSGC	3 cut(s)	67, 411, 446
TfiI	GAWTC	3 cut(s)	424, 479, 889
Tru1I	TTAA	3 cut(s)	59, 384, 563
Tru9I	TTAA	3 cut(s)	59, 384, 563
TscAI	CASTG	1 cut(s)	706
TseI	GCWGC	3 cut(s)	4, 7, 31
TspDTI	ATGAA	4 cut(s)	518, 599, 888, 897
TspGWI	ACGGA	1 cut(s)	152
TspRI	CASTG	1 cut(s)	706
VpaK11BI	GGWCC	1 cut(s)	285
XagI	CCTNNNNNAGG	2 cut(s)	152, 250
XapI	RAATTY	1 cut(s)	644
XmiI	GTMKAC	2 cut(s)	228, 453
XmnI	GAANNNNTTC	2 cut(s)	590, 888
XspI	CTAG	2 cut(s)	713, 830

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.