AT3G05220

Heavy-metal-associated domain

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Forward (+)
1488329 .. 1491772
3444 bp
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UTR
Exon/CDS
Intron
AT3G05220.2

Sequence Viewer

Length: 1734 bp
ATGAATAAACAAGATGTTATGAAACTTCAGACTTGTGTTCTGAAAGTGAACGTACACTGTGAAGGGTGTAAGCATAAAGTGAAGAAACAATTGCAGAAAATCGAAGGTGTTTACTCTGTAAAAGCAGATGTAGAACAGGGGAGAGTTACTGTTACAGGGAACATTGACCCAGCTCTTCTGGTTAAGAAACTTAGCAAATCAGGCAAACATGCCGAGATCTTAGGCGGTGGTGGAGGAGGAGGCGGCGGAGGTGGAAAGGGGTTTCCTAATCTGAATGGGCAATTTGCAAATCTCAACATGGGTGGAAACAATAAGCCTAAAGGTGGAAAAGAGAGTAACCAAGTCAAGGGTAAAGCTGGTGGTGGCGGTGGAGGAGGTCAGAATCATGGACATGGTCAGCCAATGCAATTGAATCCTCAACAGATTCAACAGATGATGATGATGAAGGCTGCTCACGGTGGTGGTGGTGGTGGTCAGATGAAGATGCCGCCTATGGCAGCTAAGGATCAGAAGAAGTCAGTTAAGTTTGCTGATGATGAAGACGATGAGTTTAGTGAAGATGATTATGATGATGAGGATTTCAGTGAAGATGATTATGATGATGATGAGTTCGATGATGATGAAGATGATGATGATGAGATGGGTCATGGTCATGGACATGGAGGAGGTGGGGGTAATCACATGCCTCCTAATAAGATGATGATGCCTAACAAGATGATGCCTCAGATGGGTGGTCATCATGGTAATGGTGGTGGACCTAAGGGTCCCAATGAGATAATGATGATGATGAATGGGTTCAAAGGCGGAGGCGGTGGAGGAAAGAAAGGCGGTGGTGGCGGGTTTGAGATTCCGGTGCAGATGAAGGGAATGGGTGAGGGTAAAAATGGAAAGGATGGTAAAAAGGGTAAAGGAGGAGAGAAGGGTAAGAAAGAAGGGAAAGAGAATAAAGGTGGGGGCAAAACCGGAAAAACAGATGCCAAAAGTGGTGGTGGTGGCCTTCTAGGGTTTTTCAAAAAGGGTAAAAGTGGGAACGGAGATGAGAAGAAGAGCGCTGGGAAGAAAGATGGCCATGGGGGTAATAAGGTCAAATCTCATGGTGGGGGAGGAGGAGTTCAGCATTATGATAGTGGGCCTAAAAAAGGTGGTGGTGGGACCAAAGGAGGAGGCCATGGGGGCCTTGACATTGATGAGCTCATGAAACACAGCAAAGGAGGAGGAGGAGGAGGTAACAAGGGCAATCATAATCATAGCGCCAAAGGGATTGGTGGTGGCCCAATGGGTCCAGGCGGTCCGATGGGTCCAGGCGGTCCGATGGGTCAAGGTGGTCCGATGGGTATGATGGGTCCAGGTGGTCCGATGAGTATGATGGGTCCAGGCGGTCCTATGGGTCCAATGGGTGGCCAAGGCGGCTCTTACCCAGCGGTTCAAGGCTTGCCAATGAGTGGAGGTGGAGGATATTATCCAGGGCCGCCTCAGGCAAGTCAGCAAATGAACCAACAACAATATATGCAAATGATGATGAACCAACAGCAGCAACAACAACAACAACAACAAGCTGTAGCTCATGGTGGCTATGGCGGTGGTCACGGTGGCGACATGTACCATCCGATGATGTACGCTCGGCCTTATCCTGCAGTTAATTATGCTCACCCTCCACCAATGCCGCCTCCTCACTCGGATTCTTATACTCATATGTTCAGCGATGAGAATCCAGGTAGTTGTAGTATTATGTGA

Protein Analysis

577

Amino Acids

58.88

Weight (kDa)

8.72

Isoelectric Point (pI)

45.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 762
AccB7I CCANNNNNTGG 2 cut(s) 1397, 1442
AclWI GGATC 1 cut(s) 513
AcoI YGGCCR 2 cut(s) 1066, 1399
AcuI CTGAAG 1 cut(s) 11
AfaI GTAC 3 cut(s) 54, 1601, 1616
AfeI AGCGCT 1 cut(s) 1051
AfiI CCNNNNNNNGG 6 cut(s) 323, 346, 728, 1139, 1397, 1442
AflIII ACRYGT 1 cut(s) 1596
AgsI TTSAA 5 cut(s) 412, 428, 799, 1012, 1427
AjnI CCWGG 6 cut(s) 1282, 1300, 1345, 1372, 1462, 1711
AleI CACNNNNGTG 1 cut(s) 459
AloI GAACNNNNNNTCC 2 cut(s) 1095, 1127
AluBI AGCT 6 cut(s) 173, 356, 500, 1192, 1556, 1562
AluI AGCT 6 cut(s) 173, 356, 500, 1192, 1556, 1562
Alw21I GWGCWC 1 cut(s) 1194
AlwI GGATC 1 cut(s) 513
Aor51HI AGCGCT 1 cut(s) 1051
AoxI GGCC 9 cut(s) 994, 1066, 1130, 1165, 1174, 1270, 1399, 1466, 1622
ApeKI GCWGC 3 cut(s) 449, 497, 1531
Asp700I GAANNNNTTC 1 cut(s) 794
AspLEI GCGC 2 cut(s) 1052, 1253
AsuHPI GGTGA 2 cut(s) 884, 1640
AxyI CCTNAGG 2 cut(s) 759, 1473
BalI TGGCCA 2 cut(s) 1068, 1401
BanII GRGCYC 1 cut(s) 1194
BbsI GAAGAC 1 cut(s) 546
Bbv12I GWGCWC 1 cut(s) 1194
BbvI GCAGC 3 cut(s) 436, 509, 1543
BciT130I CCWGG 6 cut(s) 1284, 1302, 1347, 1374, 1464, 1713
BfaI CTAG 1 cut(s) 1001
BfmI CTRYAG 2 cut(s) 1557, 1632
BfoI RGCGCY 2 cut(s) 1053, 1254
BglI GCCNNNNNGGC 2 cut(s) 1173, 1407
BglII AGATCT 1 cut(s) 216
BisI GCNGC 8 cut(s) 244, 450, 488, 498, 1408, 1469, 1532, 1664
BlsI GCNGC 8 cut(s) 245, 451, 489, 499, 1409, 1470, 1533, 1665
Bme1390I CCNGG 6 cut(s) 1284, 1302, 1347, 1374, 1464, 1713
BmiI GGNNCC 9 cut(s) 765, 766, 1153, 1175, 1281, 1299, 1344, 1371, 1389
BmrFI CCNGG 6 cut(s) 1284, 1302, 1347, 1374, 1464, 1713
BmsI GCATC 4 cut(s) 474, 693, 708, 964
BpiI GAAGAC 1 cut(s) 546
Bpu10I CCTNAGC 1 cut(s) 501
BsaBI GATNNNNATC 1 cut(s) 1707
BsaJI CCNNGG 4 cut(s) 1069, 1168, 1402, 1463
BsaWI WCCGGW 2 cut(s) 850, 962
BsaXI ACNNNNNCTCC 2 cut(s) 1095, 1125
Bsc4I CCNNNNNNNGG 6 cut(s) 323, 346, 728, 1139, 1397, 1442
Bse21I CCTNAGG 2 cut(s) 759, 1473
Bse8I GATNNNNATC 1 cut(s) 1707
BseBI CCWGG 6 cut(s) 1284, 1302, 1347, 1374, 1464, 1713
BseDI CCNNGG 4 cut(s) 1069, 1168, 1402, 1463
BseGI GGATG 2 cut(s) 898, 1603
BseJI GATNNNNATC 1 cut(s) 1707
BseLI CCNNNNNNNGG 6 cut(s) 323, 346, 728, 1139, 1397, 1442
BseMII CTCAG 2 cut(s) 737, 1487
BseXI GCAGC 3 cut(s) 436, 509, 1543
BseYI CCCAGC 3 cut(s) 169, 1052, 1417
BsgI GTGCAG 1 cut(s) 875
BshFI GGCC 9 cut(s) 996, 1068, 1132, 1167, 1176, 1272, 1401, 1468, 1624
BsiHKAI GWGCWC 1 cut(s) 1194
BsiSI CCGG 2 cut(s) 851, 963
BslFI GGGAC 2 cut(s) 750, 1165
BslI CCNNNNNNNGG 6 cut(s) 323, 346, 728, 1139, 1397, 1442
BsmFI GGGAC 2 cut(s) 750, 1165
BsnI GGCC 9 cut(s) 996, 1068, 1132, 1167, 1176, 1272, 1401, 1468, 1624
Bsp1286I GDGCHC 1 cut(s) 1194
Bsp143I GATC 2 cut(s) 216, 505
Bsp19I CCATGG 2 cut(s) 1069, 1168
BspANI GGCC 9 cut(s) 996, 1068, 1132, 1167, 1176, 1272, 1401, 1468, 1624
BspCNI CTCAG 2 cut(s) 736, 1486
BspHI TCATGA 1 cut(s) 1194
BspLI GGNNCC 9 cut(s) 765, 766, 1153, 1175, 1281, 1299, 1344, 1371, 1389
BspMAI CTGCAG 1 cut(s) 1636
BspPI GGATC 1 cut(s) 513
BspQI GCTCTTC 2 cut(s) 180, 1040
BssECI CCNNGG 4 cut(s) 1069, 1168, 1402, 1463
BssMI GATC 2 cut(s) 216, 505
BssT1I CCWWGG 3 cut(s) 1069, 1168, 1402
Bst2UI CCWGG 6 cut(s) 1284, 1302, 1347, 1374, 1464, 1713
Bst4CI ACNGT 4 cut(s) 59, 151, 458, 1589
Bst6I CTCTTC 2 cut(s) 180, 1040
BstC8I GCNNGC 1 cut(s) 1433
BstDEI CTNAG 6 cut(s) 191, 220, 501, 723, 759, 1473
BstDSI CCRYGG 2 cut(s) 1069, 1168
BstENI CCTNNNNNAGG 1 cut(s) 1137
BstF5I GGATG 2 cut(s) 898, 1603
BstH2I RGCGCY 2 cut(s) 1053, 1254
BstHHI GCGC 2 cut(s) 1052, 1253
BstKTI GATC 2 cut(s) 219, 508
BstMBI GATC 2 cut(s) 216, 505
BstMWI GCNNNNNNNGC 4 cut(s) 201, 834, 1173, 1407
BstNI CCWGG 6 cut(s) 1284, 1302, 1347, 1374, 1464, 1713
BstNSI RCATGY 3 cut(s) 212, 685, 1600
BstSCI CCNGG 6 cut(s) 1282, 1300, 1345, 1372, 1462, 1711
BstSFI CTRYAG 2 cut(s) 1557, 1632
BstV1I GCAGC 3 cut(s) 436, 509, 1543
BstV2I GAAGAC 1 cut(s) 546
BstX2I RGATCY 1 cut(s) 216
BstYI RGATCY 1 cut(s) 216
Bsu36I CCTNAGG 2 cut(s) 759, 1473
BsuRI GGCC 9 cut(s) 996, 1068, 1132, 1167, 1176, 1272, 1401, 1468, 1624
BtgI CCRYGG 2 cut(s) 1069, 1168
BtgZI GCGATG 1 cut(s) 1716
BtsCI GGATG 2 cut(s) 898, 1603
BtsIMutI CAGTG 2 cut(s) 55, 589
Cac8I GCNNGC 1 cut(s) 1433
CciI TCATGA 1 cut(s) 1194
CfoI GCGC 2 cut(s) 1052, 1253
CpoI CGGWCCG 2 cut(s) 1289, 1307
Csp6I GTAC 3 cut(s) 53, 1600, 1615
CspCI CAANNNNNGTGG 4 cut(s) 283, 318, 967, 1002
CspI CGGWCCG 2 cut(s) 1289, 1307
CviQI GTAC 3 cut(s) 53, 1600, 1615
DdeI CTNAG 6 cut(s) 191, 220, 501, 723, 759, 1473
DpnI GATC 2 cut(s) 218, 507
DpnII GATC 2 cut(s) 216, 505
DrdI GACNNNNNNGTC 1 cut(s) 762
DseDI GACNNNNNNGTC 1 cut(s) 762
EaeI YGGCCR 2 cut(s) 1066, 1399
Eam1104I CTCTTC 2 cut(s) 180, 1040
EarI CTCTTC 2 cut(s) 180, 1040
EciI GGCGGA 2 cut(s) 261, 819
Ecl136II GAGCTC 1 cut(s) 1192
Eco130I CCWWGG 3 cut(s) 1069, 1168, 1402
Eco24I GRGCYC 1 cut(s) 1194
Eco47III AGCGCT 1 cut(s) 1051
Eco53kI GAGCTC 1 cut(s) 1192
Eco57I CTGAAG 1 cut(s) 11
Eco81I CCTNAGG 2 cut(s) 759, 1473
EcoICRI GAGCTC 1 cut(s) 1192
EcoNI CCTNNNNNAGG 1 cut(s) 1137
EcoO109I RGGNCCY 2 cut(s) 764, 1174
EcoRII CCWGG 6 cut(s) 1282, 1300, 1345, 1372, 1462, 1711
EcoT14I CCWWGG 3 cut(s) 1069, 1168, 1402
EcoT38I GRGCYC 1 cut(s) 1194
ErhI CCWWGG 3 cut(s) 1069, 1168, 1402
FaqI GGGAC 2 cut(s) 750, 1165
FauI CCCGC 1 cut(s) 830
FauNDI CATATG 1 cut(s) 1692
Fnu4HI GCNGC 8 cut(s) 244, 450, 488, 498, 1408, 1469, 1532, 1664
FokI GGATG 2 cut(s) 905, 1590
FriOI GRGCYC 1 cut(s) 1194
Fsp4HI GCNGC 8 cut(s) 244, 450, 488, 498, 1408, 1469, 1532, 1664
FspBI CTAG 1 cut(s) 1001
GlaI GCGC 2 cut(s) 1051, 1252
GluI GCNGC 8 cut(s) 244, 450, 488, 498, 1408, 1469, 1532, 1664
GsaI CCCAGC 3 cut(s) 173, 1056, 1421
HaeII RGCGCY 2 cut(s) 1053, 1254
HaeIII GGCC 9 cut(s) 996, 1068, 1132, 1167, 1176, 1272, 1401, 1468, 1624
HapII CCGG 2 cut(s) 851, 963
HhaI GCGC 2 cut(s) 1052, 1253
Hin6I GCGC 2 cut(s) 1050, 1251
HinP1I GCGC 2 cut(s) 1050, 1251
HinfI GANTC 6 cut(s) 382, 412, 424, 847, 1679, 1708
HpaII CCGG 2 cut(s) 851, 963
HphI GGTGA 2 cut(s) 884, 1640
Hpy166II GTNNAC 4 cut(s) 49, 55, 112, 755
Hpy188III TCNNGA 1 cut(s) 1195
Hpy8I GTNNAC 4 cut(s) 49, 55, 112, 755
HpyAV CCTTC 7 cut(s) 56, 98, 439, 856, 913, 926, 1007
HpyCH4III ACNGT 4 cut(s) 59, 151, 458, 1589
HpyCH4IV ACGT 1 cut(s) 51
HpyCH4V TGCA 6 cut(s) 94, 287, 406, 856, 1510, 1634
HpyF10VI GCNNNNNNNGC 4 cut(s) 201, 834, 1173, 1407
HpyF3I CTNAG 6 cut(s) 191, 220, 501, 723, 759, 1473
HpySE526I ACGT 1 cut(s) 51
HspAI GCGC 2 cut(s) 1050, 1251
KflI GGGWCCC 1 cut(s) 764
Kzo9I GATC 2 cut(s) 216, 505
LguI GCTCTTC 2 cut(s) 180, 1040
Lsp1109I GCAGC 3 cut(s) 436, 509, 1543
LweI GCATC 4 cut(s) 474, 693, 708, 964
MaeI CTAG 1 cut(s) 1001
MaeII ACGT 1 cut(s) 51
MaeIII GTNAC 5 cut(s) 145, 151, 335, 1226, 1583
MalI GATC 2 cut(s) 218, 507
MboI GATC 2 cut(s) 216, 505
MfeI CAATTG 2 cut(s) 89, 407
MflI RGATCY 1 cut(s) 216
MhlI GDGCHC 1 cut(s) 1194
MlsI TGGCCA 2 cut(s) 1068, 1401
MluCI AATT 4 cut(s) 89, 281, 407, 1639
MluNI TGGCCA 2 cut(s) 1068, 1401
Mox20I TGGCCA 2 cut(s) 1068, 1401
MroXI GAANNNNTTC 1 cut(s) 794
MscI TGGCCA 2 cut(s) 1068, 1401
MseI TTAA 3 cut(s) 183, 522, 1638
MslI CAYNNNNRTG 5 cut(s) 390, 459, 651, 657, 744
Msp20I TGGCCA 2 cut(s) 1068, 1401
MspA1I CMGCKG 1 cut(s) 1421
MspI CCGG 2 cut(s) 851, 963
MspR9I CCNGG 6 cut(s) 1284, 1302, 1347, 1374, 1464, 1713
MunI CAATTG 2 cut(s) 89, 407
MvaI CCWGG 6 cut(s) 1284, 1302, 1347, 1374, 1464, 1713
MwoI GCNNNNNNNGC 4 cut(s) 201, 834, 1173, 1407
NcoI CCATGG 2 cut(s) 1069, 1168
NdeI CATATG 1 cut(s) 1692
NdeII GATC 2 cut(s) 216, 505
NlaIV GGNNCC 9 cut(s) 765, 766, 1153, 1175, 1281, 1299, 1344, 1371, 1389
NmeAIII GCCGAG 2 cut(s) 238, 1600
NmuCI GTSAC 1 cut(s) 1583
NspI RCATGY 3 cut(s) 212, 685, 1600
OliI CACNNNNGTG 1 cut(s) 459
PagI TCATGA 1 cut(s) 1194
PciI ACATGT 1 cut(s) 1596
PciSI GCTCTTC 2 cut(s) 180, 1040
PdmI GAANNNNTTC 1 cut(s) 794
PfeI GAWTC 6 cut(s) 382, 412, 424, 847, 1679, 1708
PflFI GACNNNGTC 1 cut(s) 393
PflMI CCANNNNNTGG 2 cut(s) 1397, 1442
PkrI GCNGC 8 cut(s) 245, 451, 489, 499, 1409, 1470, 1533, 1665
PpuMI RGGWCCY 1 cut(s) 764
PscI ACATGT 1 cut(s) 1596
Psp124BI GAGCTC 1 cut(s) 1194
Psp5II RGGWCCY 1 cut(s) 764
Psp6I CCWGG 6 cut(s) 1282, 1300, 1345, 1372, 1462, 1711
PspFI CCCAGC 3 cut(s) 169, 1052, 1417
PspGI CCWGG 6 cut(s) 1282, 1300, 1345, 1372, 1462, 1711
PspN4I GGNNCC 9 cut(s) 765, 766, 1153, 1175, 1281, 1299, 1344, 1371, 1389
PspPPI RGGWCCY 1 cut(s) 764
PstI CTGCAG 1 cut(s) 1636
PsuI RGATCY 1 cut(s) 216
PsyI GACNNNGTC 1 cut(s) 393
RsaI GTAC 3 cut(s) 54, 1601, 1616
RsaNI GTAC 3 cut(s) 53, 1600, 1615
RseI CAYNNNNRTG 5 cut(s) 390, 459, 651, 657, 744
Rsr2I CGGWCCG 2 cut(s) 1289, 1307
RsrII CGGWCCG 2 cut(s) 1289, 1307
SacI GAGCTC 1 cut(s) 1194
SapI GCTCTTC 2 cut(s) 180, 1040
SaqAI TTAA 3 cut(s) 183, 522, 1638
SatI GCNGC 8 cut(s) 244, 450, 488, 498, 1408, 1469, 1532, 1664
Sau3AI GATC 2 cut(s) 216, 505
ScrFI CCNGG 6 cut(s) 1284, 1302, 1347, 1374, 1464, 1713
SduI GDGCHC 1 cut(s) 1194
SfaNI GCATC 4 cut(s) 474, 693, 708, 964
SfcI CTRYAG 2 cut(s) 1557, 1632
SfiI GGCCNNNNNGGCC 1 cut(s) 1173
SmiMI CAYNNNNRTG 5 cut(s) 390, 459, 651, 657, 744
Sse9I AATT 4 cut(s) 89, 281, 407, 1639
SspMI CTAG 1 cut(s) 1001
SstI GAGCTC 1 cut(s) 1194
StyD4I CCNGG 6 cut(s) 1282, 1300, 1345, 1372, 1462, 1711
StyI CCWWGG 3 cut(s) 1069, 1168, 1402
TaaI ACNGT 4 cut(s) 59, 151, 458, 1589
TaiI ACGT 1 cut(s) 54
TaqI TCGA 2 cut(s) 102, 612
TasI AATT 4 cut(s) 89, 281, 407, 1639
TauI GCSGC 5 cut(s) 246, 490, 1410, 1471, 1666
TfiI GAWTC 6 cut(s) 382, 412, 424, 847, 1679, 1708
Tru1I TTAA 3 cut(s) 183, 522, 1638
Tru9I TTAA 3 cut(s) 183, 522, 1638
TscAI CASTG 2 cut(s) 62, 589
TseFI GTSAC 1 cut(s) 1583
TseI GCWGC 3 cut(s) 449, 497, 1531
Tsp45I GTSAC 1 cut(s) 1583
TspGWI ACGGA 1 cut(s) 1047
TspRI CASTG 2 cut(s) 62, 589
Tth111I GACNNNGTC 1 cut(s) 393
Van91I CCANNNNNTGG 2 cut(s) 1397, 1442
XagI CCTNNNNNAGG 1 cut(s) 1137
XceI RCATGY 3 cut(s) 212, 685, 1600
XmnI GAANNNNTTC 1 cut(s) 794
XspI CTAG 1 cut(s) 1001
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.