pycom04g18420

mediator of RNA polymerase II transcription subunit

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
Physical Location & Seq
Reverse (-)
20434289 .. 20436595
2307 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g18420.3

Sequence Viewer

Length: 1785 bp
ATGAGTAAACAGGAGATGATGAAGCTTCAGACCTGTGTTCTCAAGGTTAATATTGACTGTGATGGATGCAAGCATAAGATAAAGAAATTGCTGCAGAAAATCGATGGTGTGTACACAACAAGTATAGATGCAGAGCATAGCAAGGTGACTGTGACAGGGAATGTTGATCCAATCACAATCATCAAGAAACTTGCAAAAATGGGGAAACATGCAGAACTCTGGGGAGGTTCGAAGGGTTCAAATTTCAATCAAGCCCAGCTCAACAACCAGTTCAAGAACATGGCTATGCCGGTCCAGAACGCGAAGGGCGGTGGCCACCAGCAACATCCACAAAAGGGCGGAGGAGGCCATCAGCAACAACCACAAAAGGGCGGAGGAGGTCACCAGCAGCAACACCAACAAATGAAAGGGGGTAATGGTAATGTTATGAAGGCGCCTCAGAAGGACCAGAAGTCTGTGAAGTTCAATCTGCCGGCAGAAGGGGACGAATTTGACGGTAGCGATTTCGATGAGTATGACGATGAATTTGATGATGAGTTTGATGATGATGAATTCGATGATGATTATTACGATGAGGAGGAAGAGCTTGATCATGGACATCATCAGATGGCTAAGAACAAGGCGATGGGTAATATTGGAAATGGGGCACAAGGAGGTCCTTATGGGAAGATGATGCCGATGATGGGTGGTAATAATGGCCATGGGCCACAGGTGCCTGCTGGGATGATGAATATGTTGCATGCGATGAACGACAAGAAGTTAGGTGGCGGTGGCGGTGGTGGGGGCGGCGGTGGGGGAGGGTCTGCTAAGAAAGGCGGGGTGATTGATTTCCCTGTGCAAGTAAAGGGAATGGGTGGAAATAACGAAAAGAAGAATGGCAAGGACGGAAATGGAGGAAAGAAAAGCGGTGGAAATAGCAAGGGTGGGGATAAGAAACAAGGTGGTAAAGGTAAGACAGAGGGCAAAGATGGCAAAAAAGGAGGTGGCTTGCTAGGGTGGCTTAGCCGGAGTACGAGTATCGGACGAGGTGGTTCGAAAGGCGGTGGGGACGAGAAAAGTAAGGGCAAGGGCAATGGAGGCAAAAAGGGTGGGGGCAAACTTGAGAAAAATGATTTTCATGACATTGATTTCAATGGCAAAGGAGGCAAAGGAGGCAAGGGTGGGAAAGAAGGCAAGGAGGGCAAAGATGGAAAAGGAGGCAAAGGTGGCAAAGGAGGCAAAGGGGGCAAAGGTGGCAAAGGCAGTGATGATGATGACGAGGATATGCAACAAATGGGTTACATGGGCCGAAAGGGCCAGATGGGTCAAATGGGTCATGTGGGAAATATTGGTCAAATGGGGCAGATGCCTCAAATGGGCCAAATGGGTCAAATGGGGCAGATGCCTCAAATGGGCCAAATGGGGCGTGGTGGTGAGAATATGGGCCAGATGGGCCAAATGGGTCAAATGGGTAGCTATCCGATGGGGCAGATGGGTAATGTTCCTGCAGTACAAGGACTGCCTGCACAGGCGATGATGAACGGCGGAGGGGGATACTATCAAGGCGGTATGGGGGCCGGCAACCCATATAATCAGCAGCAGCAGCAATACATGGCCATGATGATGAATCAGCAGAGAGCAGCAGCCAATGGTGGAAATGATATGTACCATCCAATGATGTACCCCCGTCAGCCGCCACCGCCGATGAACTACATGCCCCAACAGCCAATGCCATCAGGACCTGCATCTGATCCTTATGGCAACTACTTCAGTGATGAGAACCCTAATGGTTGTAGTATCATGTAA

Protein Analysis

595

Amino Acids

62.29

Weight (kDa)

8.92

Isoelectric Point (pI)

36.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1729
AccB1I GGYRCC 2 cut(s) 433, 712
AccII CGCG 1 cut(s) 302
AclWI GGATC 2 cut(s) 161, 1724
AcoI YGGCCR 3 cut(s) 313, 697, 1593
AcsI RAATTY 4 cut(s) 241, 488, 524, 551
AcuI CTGAAG 2 cut(s) 11, 1732
AcyI GRCGYC 1 cut(s) 434
AfaI GTAC 5 cut(s) 113, 1012, 1491, 1646, 1661
AfiI CCNNNNNNNGG 6 cut(s) 335, 368, 479, 683, 1355, 1391
AgsI TTSAA 5 cut(s) 240, 247, 274, 466, 1132
AhdI GACNNNNNGTC 1 cut(s) 451
AluBI AGCT 4 cut(s) 25, 259, 586, 1455
AluI AGCT 4 cut(s) 25, 259, 586, 1455
AlwI GGATC 2 cut(s) 161, 1724
AlwNI CAGNNNCTG 1 cut(s) 1721
ApeKI GCWGC 7 cut(s) 91, 388, 1576, 1579, 1582, 1619, 1622
ApoI RAATTY 4 cut(s) 241, 488, 524, 551
ArsI GACNNNNNNTTYG 2 cut(s) 509, 541
AspLEI GCGC 1 cut(s) 436
AsuHPI GGTGA 4 cut(s) 157, 374, 832, 1424
AsuII TTCGAA 2 cut(s) 230, 1034
AvaII GGWCC 4 cut(s) 292, 445, 656, 1718
BaeGI GKGCMC 1 cut(s) 649
BalI TGGCCA 3 cut(s) 315, 699, 1595
BanI GGYRCC 2 cut(s) 433, 712
BbvI GCAGC 7 cut(s) 78, 400, 1588, 1591, 1594, 1631, 1634
BceAI ACGGC 1 cut(s) 1537
BciVI GTATCC 1 cut(s) 1526
BclI TGATCA 1 cut(s) 589
BfaI CTAG 1 cut(s) 992
BfmI CTRYAG 2 cut(s) 92, 1485
BfoI RGCGCY 1 cut(s) 437
BfuAI ACCTGC 1 cut(s) 1729
BfuI GTATCC 1 cut(s) 1526
BglI GCCNNNNNGGC 2 cut(s) 1293, 1431
BisI GCNGC 9 cut(s) 92, 389, 787, 1577, 1580, 1583, 1620, 1623, 1673
BlpI GCTNAGC 1 cut(s) 1001
BlsI GCNGC 9 cut(s) 93, 390, 788, 1578, 1581, 1584, 1621, 1624, 1674
Bme18I GGWCC 4 cut(s) 292, 445, 656, 1718
BmeRI GACNNNNNGTC 1 cut(s) 451
BmiI GGNNCC 3 cut(s) 435, 714, 1555
BmsI GCATC 6 cut(s) 56, 118, 663, 1335, 1371, 1733
Bpu1102I GCTNAGC 1 cut(s) 1001
Bpu14I TTCGAA 2 cut(s) 230, 1034
BpuEI CTTGAG 2 cut(s) 26, 1121
Bsa29I ATCGAT 1 cut(s) 102
BsaHI GRCGYC 1 cut(s) 434
BsaJI CCNNGG 1 cut(s) 700
BsaXI ACNNNNNCTCC 2 cut(s) 1000, 1030
Bsc4I CCNNNNNNNGG 6 cut(s) 335, 368, 479, 683, 1355, 1391
Bse118I RCCGGY 3 cut(s) 289, 472, 1556
Bse1I ACTGG 1 cut(s) 268
Bse3DI GCAATG 1 cut(s) 1078
BseCI ATCGAT 1 cut(s) 102
BseDI CCNNGG 1 cut(s) 700
BseGI GGATG 4 cut(s) 71, 325, 729, 1648
BseLI CCNNNNNNNGG 6 cut(s) 335, 368, 479, 683, 1355, 1391
BseMI GCAATG 1 cut(s) 1078
BseMII CTCAG 1 cut(s) 452
BseNI ACTGG 1 cut(s) 268
BseRI GAGGAG 3 cut(s) 357, 390, 590
BseSI GKGCMC 1 cut(s) 649
BseXI GCAGC 7 cut(s) 78, 400, 1588, 1591, 1594, 1631, 1634
BseYI CCCAGC 2 cut(s) 255, 719
BsgI GTGCAG 1 cut(s) 1488
Bsh1236I CGCG 1 cut(s) 302
BshNI GGYRCC 2 cut(s) 433, 712
BshVI ATCGAT 1 cut(s) 102
BsiSI CCGG 4 cut(s) 290, 473, 1006, 1557
BslFI GGGAC 2 cut(s) 497, 1061
BslI CCNNNNNNNGG 6 cut(s) 335, 368, 479, 683, 1355, 1391
BsmFI GGGAC 2 cut(s) 497, 1061
Bsp119I TTCGAA 2 cut(s) 230, 1034
Bsp1286I GDGCHC 1 cut(s) 649
Bsp1407I TGTACA 1 cut(s) 111
Bsp143I GATC 3 cut(s) 166, 589, 1729
Bsp1720I GCTNAGC 1 cut(s) 1001
Bsp19I CCATGG 1 cut(s) 700
BspCNI CTCAG 1 cut(s) 451
BspDI ATCGAT 1 cut(s) 102
BspFNI CGCG 1 cut(s) 302
BspHI TCATGA 1 cut(s) 1117
BspLI GGNNCC 3 cut(s) 435, 714, 1555
BspMAI CTGCAG 2 cut(s) 96, 1489
BspMI ACCTGC 1 cut(s) 1729
BspPI GGATC 2 cut(s) 161, 1724
BspQI GCTCTTC 1 cut(s) 576
BspT104I TTCGAA 2 cut(s) 230, 1034
BspT107I GGYRCC 2 cut(s) 433, 712
BsrDI GCAATG 1 cut(s) 1078
BsrFI RCCGGY 3 cut(s) 289, 472, 1556
BsrGI TGTACA 1 cut(s) 111
BsrI ACTGG 1 cut(s) 268
BssAI RCCGGY 3 cut(s) 289, 472, 1556
BssECI CCNNGG 1 cut(s) 700
BssMI GATC 3 cut(s) 166, 589, 1729
BssNI GRCGYC 1 cut(s) 434
BssT1I CCWWGG 1 cut(s) 700
Bst4CI ACNGT 3 cut(s) 59, 151, 497
Bst6I CTCTTC 1 cut(s) 576
BstACI GRCGYC 1 cut(s) 434
BstAUI TGTACA 1 cut(s) 111
BstBI TTCGAA 2 cut(s) 230, 1034
BstC8I GCNNGC 7 cut(s) 71, 474, 717, 741, 989, 1503, 1558
BstDEI CTNAG 4 cut(s) 438, 612, 807, 1001
BstDSI CCRYGG 1 cut(s) 700
BstEII GGTNACC 1 cut(s) 380
BstF5I GGATG 4 cut(s) 71, 325, 729, 1648
BstFNI CGCG 1 cut(s) 302
BstH2I RGCGCY 1 cut(s) 437
BstHHI GCGC 1 cut(s) 436
BstKTI GATC 3 cut(s) 169, 592, 1732
BstMBI GATC 3 cut(s) 166, 589, 1729
BstNSI RCATGY 3 cut(s) 212, 743, 1696
BstPI GGTNACC 1 cut(s) 380
BstSFI CTRYAG 2 cut(s) 92, 1485
BstSLI GKGCMC 1 cut(s) 649
BstUI CGCG 1 cut(s) 302
BstV1I GCAGC 7 cut(s) 78, 400, 1588, 1591, 1594, 1631, 1634
Bsu15I ATCGAT 1 cut(s) 102
BsuI GTATCC 1 cut(s) 1526
BsuTUI ATCGAT 1 cut(s) 102
BtgI CCRYGG 1 cut(s) 700
BtgZI GCGATG 3 cut(s) 638, 758, 1526
BtsCI GGATG 4 cut(s) 71, 325, 729, 1648
BtsI GCAGTG 1 cut(s) 1249
BtsIMutI CAGTG 2 cut(s) 1249, 1756
BveI ACCTGC 1 cut(s) 1729
Cac8I GCNNGC 7 cut(s) 71, 474, 717, 741, 989, 1503, 1558
CaiI CAGNNNCTG 1 cut(s) 1721
CciI TCATGA 1 cut(s) 1117
CfoI GCGC 1 cut(s) 436
Cfr10I RCCGGY 3 cut(s) 289, 472, 1556
ClaI ATCGAT 1 cut(s) 102
Csp6I GTAC 5 cut(s) 112, 1011, 1490, 1645, 1660
CspCI CAANNNNNGTGG 2 cut(s) 1069, 1104
CviQI GTAC 5 cut(s) 112, 1011, 1490, 1645, 1660
DdeI CTNAG 4 cut(s) 438, 612, 807, 1001
DinI GGCGCC 1 cut(s) 435
DpnI GATC 3 cut(s) 168, 591, 1731
DpnII GATC 3 cut(s) 166, 589, 1729
DriI GACNNNNNGTC 1 cut(s) 451
EaeI YGGCCR 3 cut(s) 313, 697, 1593
Eam1104I CTCTTC 1 cut(s) 576
Eam1105I GACNNNNNGTC 1 cut(s) 451
EarI CTCTTC 1 cut(s) 576
EciI GGCGGA 3 cut(s) 354, 387, 1539
Eco130I CCWWGG 1 cut(s) 700
Eco47I GGWCC 4 cut(s) 292, 445, 656, 1718
Eco57I CTGAAG 2 cut(s) 11, 1732
Eco91I GGTNACC 1 cut(s) 380
EcoO109I RGGNCCY 2 cut(s) 656, 1718
EcoO65I GGTNACC 1 cut(s) 380
EcoRI GAATTC 1 cut(s) 551
EcoT14I CCWWGG 1 cut(s) 700
EgeI GGCGCC 1 cut(s) 435
EheI GGCGCC 1 cut(s) 435
ErhI CCWWGG 1 cut(s) 700
FaqI GGGAC 2 cut(s) 497, 1061
FauI CCCGC 1 cut(s) 809
FbaI TGATCA 1 cut(s) 589
Fnu4HI GCNGC 9 cut(s) 92, 389, 787, 1577, 1580, 1583, 1620, 1623, 1673
FokI GGATG 4 cut(s) 78, 312, 736, 1635
Fsp4HI GCNGC 9 cut(s) 92, 389, 787, 1577, 1580, 1583, 1620, 1623, 1673
FspBI CTAG 1 cut(s) 992
GlaI GCGC 1 cut(s) 435
GluI GCNGC 9 cut(s) 92, 389, 787, 1577, 1580, 1583, 1620, 1623, 1673
GsaI CCCAGC 2 cut(s) 259, 723
HaeII RGCGCY 1 cut(s) 437
HapII CCGG 4 cut(s) 290, 473, 1006, 1557
HhaI GCGC 1 cut(s) 436
Hin1I GRCGYC 1 cut(s) 434
Hin6I GCGC 1 cut(s) 434
HinP1I GCGC 1 cut(s) 434
HindIII AAGCTT 1 cut(s) 23
HinfI GANTC 1 cut(s) 1606
HpaII CCGG 4 cut(s) 290, 473, 1006, 1557
HphI GGTGA 4 cut(s) 157, 374, 832, 1424
Hpy166II GTNNAC 3 cut(s) 8, 112, 114
Hpy188I TCNGA 6 cut(s) 30, 441, 606, 1022, 1461, 1729
Hpy188III TCNNGA 5 cut(s) 184, 274, 295, 1118, 1716
Hpy8I GTNNAC 3 cut(s) 8, 112, 114
HpyAV CCTTC 6 cut(s) 226, 298, 424, 436, 473, 1163
HpyCH4III ACNGT 3 cut(s) 59, 151, 497
HpyF3I CTNAG 4 cut(s) 438, 612, 807, 1001
Hsp92I GRCGYC 1 cut(s) 434
HspAI GCGC 1 cut(s) 434
KasI GGCGCC 1 cut(s) 433
KroI GCCGGC 2 cut(s) 472, 1556
KroNI GCCGGC 2 cut(s) 474, 1558
Ksp22I TGATCA 1 cut(s) 589
Kzo9I GATC 3 cut(s) 166, 589, 1729
LguI GCTCTTC 1 cut(s) 576
Lsp1109I GCAGC 7 cut(s) 78, 400, 1588, 1591, 1594, 1631, 1634
LweI GCATC 6 cut(s) 56, 118, 663, 1335, 1371, 1733
MaeI CTAG 1 cut(s) 992
MaeIII GTNAC 4 cut(s) 145, 151, 380, 1277
MalI GATC 3 cut(s) 168, 591, 1731
MboI GATC 3 cut(s) 166, 589, 1729
MboII GAAGA 3 cut(s) 593, 679, 883
MhlI GDGCHC 1 cut(s) 649
MlsI TGGCCA 3 cut(s) 315, 699, 1595
MluCI AATT 5 cut(s) 86, 241, 488, 524, 551
MluNI TGGCCA 3 cut(s) 315, 699, 1595
Mly113I GGCGCC 1 cut(s) 434
Mox20I TGGCCA 3 cut(s) 315, 699, 1595
MroNI GCCGGC 2 cut(s) 472, 1556
MscI TGGCCA 3 cut(s) 315, 699, 1595
MseI TTAA 1 cut(s) 48
MslI CAYNNNNRTG 3 cut(s) 284, 1595, 1601
Msp20I TGGCCA 3 cut(s) 315, 699, 1595
MspI CCGG 4 cut(s) 290, 473, 1006, 1557
MvnI CGCG 1 cut(s) 302
NaeI GCCGGC 2 cut(s) 474, 1558
NarI GGCGCC 1 cut(s) 434
NcoI CCATGG 1 cut(s) 700
NdeII GATC 3 cut(s) 166, 589, 1729
NgoMIV GCCGGC 2 cut(s) 472, 1556
NlaIV GGNNCC 3 cut(s) 435, 714, 1555
NmuCI GTSAC 3 cut(s) 145, 151, 380
NspI RCATGY 3 cut(s) 212, 743, 1696
NspV TTCGAA 2 cut(s) 230, 1034
PaeI GCATGC 1 cut(s) 743
PagI TCATGA 1 cut(s) 1117
PciSI GCTCTTC 1 cut(s) 576
PdiI GCCGGC 2 cut(s) 474, 1558
PfeI GAWTC 1 cut(s) 1606
PkrI GCNGC 9 cut(s) 93, 390, 788, 1578, 1581, 1584, 1621, 1624, 1674
PluTI GGCGCC 1 cut(s) 437
PpuMI RGGWCCY 2 cut(s) 656, 1718
Psp5II RGGWCCY 2 cut(s) 656, 1718
PspEI GGTNACC 1 cut(s) 380
PspFI CCCAGC 2 cut(s) 255, 719
PspN4I GGNNCC 3 cut(s) 435, 714, 1555
PspPPI RGGWCCY 2 cut(s) 656, 1718
PstI CTGCAG 2 cut(s) 96, 1489
PstNI CAGNNNCTG 1 cut(s) 1721
RsaI GTAC 5 cut(s) 113, 1012, 1491, 1646, 1661
RsaNI GTAC 5 cut(s) 112, 1011, 1490, 1645, 1660
RseI CAYNNNNRTG 3 cut(s) 284, 1595, 1601
SapI GCTCTTC 1 cut(s) 576
SaqAI TTAA 1 cut(s) 48
SatI GCNGC 9 cut(s) 92, 389, 787, 1577, 1580, 1583, 1620, 1623, 1673
Sau3AI GATC 3 cut(s) 166, 589, 1729
SduI GDGCHC 1 cut(s) 649
SfaNI GCATC 6 cut(s) 56, 118, 663, 1335, 1371, 1733
SfcI CTRYAG 2 cut(s) 92, 1485
SfiI GGCCNNNNNGGCC 2 cut(s) 1293, 1431
SfoI GGCGCC 1 cut(s) 435
SfuI TTCGAA 2 cut(s) 230, 1034
SinI GGWCC 4 cut(s) 292, 445, 656, 1718
SmiMI CAYNNNNRTG 3 cut(s) 284, 1595, 1601
SmlI CTYRAG 2 cut(s) 41, 1100
SmoI CTYRAG 2 cut(s) 41, 1100
SphI GCATGC 1 cut(s) 743
Sse9I AATT 5 cut(s) 86, 241, 488, 524, 551
SspDI GGCGCC 1 cut(s) 433
SspI AATATT 3 cut(s) 52, 634, 1327
SspMI CTAG 1 cut(s) 992
StyI CCWWGG 1 cut(s) 700
TaaI ACNGT 3 cut(s) 59, 151, 497
TaqI TCGA 5 cut(s) 102, 230, 507, 555, 1034
TasI AATT 5 cut(s) 86, 241, 488, 524, 551
TatI WGTACW 2 cut(s) 111, 1489
TauI GCSGC 2 cut(s) 789, 1675
TfiI GAWTC 1 cut(s) 1606
Tru1I TTAA 1 cut(s) 48
Tru9I TTAA 1 cut(s) 48
TscAI CASTG 2 cut(s) 1249, 1756
TseFI GTSAC 3 cut(s) 145, 151, 380
TseI GCWGC 7 cut(s) 91, 388, 1576, 1579, 1582, 1619, 1622
Tsp45I GTSAC 3 cut(s) 145, 151, 380
TspGWI ACGGA 1 cut(s) 900
TspRI CASTG 2 cut(s) 1249, 1756
VpaK11BI GGWCC 4 cut(s) 292, 445, 656, 1718
XapI RAATTY 4 cut(s) 241, 488, 524, 551
XceI RCATGY 3 cut(s) 212, 743, 1696
XcmI CCANNNNNNNNNTGG 1 cut(s) 1403
XspI CTAG 1 cut(s) 992
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.