Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0007986

Physical Location & Seq

Genomic Coordinates Reverse (-)

28785293 .. 28788113

Gene Structure 2821 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G329100.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1692 bp

ATGAGTAAGCTGGAGGTTATGGATCTTGAGAGATCGGTTTACAAAGTAAATATTTGCTGCTTGGGCTGTAAGGGGAAAGTTAGGAAAGCGTTGAAAATTGAAGGTGTGTACAACAGCATTATAGATGCAGATCAGGGGATGGTGACTGTGATTGGGAATATTGAGCCAATCATATTTATTAAGAAACTTAAAAAAGAAGGGAAAAATGCCCAGCTTCTGGGAGTTCAAAGGATTTCAAACAACAACCAAGCTCAGCTCAACAATCAGATGGCTGCTGGGAAAGGTGGAAAAGACAACAAATCTCAGAAGCCAAAGGGTGGCCAACAACAACAACAAGCACAGCAGCAGCATCAATTCAAAGGGGGTAAAGCCATGAAAATGCCTCCTCCTAAGGACCAGAAATCTGTGAAATTCAATTTGCCAGAGGATGAATTTGGTGGGAGTGATGGTGAGTTTGATGATGAATATGACAGTGAGTTTGATGATGAGGAATTTGATGAGTTTGGTGATGAAGATTATGATGATGATGATGATGAACAAGAGTTTGGGCATGGCCATGGCCATCACCAGCAGCAGCAACCCAATAAGATGATGCCAGGTATGATGGGTCCACAAGGGCCTTATGGGAAGATGATGCCAATCATGGGAAATGGCCATGGGCCACATGGGCCTGCTGGAATGATCAATATGCATGCTATGAATGAGAAAAAATCAGGTGGCGGTGGTGGGGGAGGCTCTGCCAAGAAAGGTGGGGTTATTGAATTTCCTGTGCAATTGAAGGGCAAGAGTGAAAATAATGAAAAGAAGAATGGCAAGGATGGAAAGAAAGGGGGTGGAAATGGCAAAGGAGGGGAGAAAAAGAAAGGAGAAAAAGAAAAAGAAGAGTGCAAGAGTGGAGGTGGCTTGGTGGGTTGGCTTAAAAGAAGTACTAGTATAGGAAGGGGTGGTTCCAAAGGAAGTGGTGTGGATGGTGGTGATGGGAAAAACAATGGCAAGGGCAATGGAGGGAAAAAGGGTGGAGGCAAACATGATGGTGCCCGTGAACTTAAGAAGGGGAAAAATGATTATCATGAAATTGATGTGGTGCTCAATCATGGCAAAGGAGGGAAAGGGGGCAAAGAAATCAAAGAAGGCAAAGAGGGGAAGGGAAGCAATGGAGGCAAAGGAGGAGGCAAAGGAGGAGGCAATGGAGGAGATATGCATCAAATTCAAATGGGCCAAAAGGGCCAGATGGTTCCAATTGGGCAGATGGGTCAAATGGGCCAGAGGGGTCCAATGGGTCAGATGGGTCAGACGGGCCAAATGGGCCAGAGGGGTCCAATGGGTAATTATCCAATGGGGCAGATGGGTAATGCTCCAGCAGTTCAAGGATTGCCTACACCATCGATGATGAACGGTGGATATTATCAAGGGATGGGGCCTGCTGGAAACCCTTATAACCAGCAGCAGCAGCAGCAGCTCCAGCAACTACAGCAGCAGCAGCAGATGCAGCTGCAGCAACAACAATACATGGCCATGATGATGAACCAACAGAGAGGCAATGGCAATGGCAATGGCATGTACCAGCCCATGATGTATGCACGGCCACATGCCCCCATGAACTTCATGCCTCCTCAGCAAATGCCATCTTCAAATGATCCTTACTCCAACTATTTCAGTGATGAGAATCCTAATGGTTGCTATCTTATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0009506 GO:0009987 GO:0019725 GO:0030001 GO:0030003 GO:0030054 GO:0042592 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055044 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

564

Amino Acids

60.42

Weight (kDa)

9.03

Isoelectric Point (pI)

41.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007986)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05220 AT3G05220
fragaria_vesca	FvH4_6g05480 FvH4_6g05480 FvH4_6g05480 FvH4_6g05480
malus_domestica	MD04G1208200.v1.1 MD12G1222200.v1.1
prunus_persica	Prupe.6G329100_v2.0.a1 Prupe.6G329100_v2.0.a1
pyrus_communis	pycom04g18420 pycom12g20840
rosa_chinensis	RchiOBHm_Chr3g0454261
rosa_laevigata	RLG00000025471
rosa_multiflora	Rmu_sc0005231.1_g000005
rosa_roxburghii	Rroxscaffold_165G00437040 Rroxscaffold_6G00425300
rosa_rugosa	Rorug02G0653600
rosa_samantha	Rh3AG057200 Rh3BG058700 Rh3CG057900 Rh3DG059200
rosa_wichuraiana	Rw0G001730 Rw3G004400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1437
AccB1I	GGYRCC	1 cut(s)	1034
AccB7I	CCANNNNNTGG	2 cut(s)	217, 317
AciI	CCGC	1 cut(s)	720
AclWI	GGATC	2 cut(s)	30, 1631
AcoI	YGGCCR	6 cut(s)	319, 553, 559, 652, 1512, 1583
AcsI	RAATTY	5 cut(s)	410, 431, 491, 761, 1206
AfaI	GTAC	3 cut(s)	110, 928, 1562
AfiI	CCNNNNNNNGG	3 cut(s)	217, 317, 644
AflII	CTTAAG	1 cut(s)	1046
AhlI	ACTAGT	1 cut(s)	929
AjnI	CCWGG	1 cut(s)	595
AjuI	GAANNNNNNNTTGG	2 cut(s)	528, 560
AluBI	AGCT	6 cut(s)	10, 214, 251, 256, 1459, 1492
AluI	AGCT	6 cut(s)	10, 214, 251, 256, 1459, 1492
Alw21I	GWGCWC	1 cut(s)	1089
AlwI	GGATC	2 cut(s)	30, 1631
AlwNI	CAGNNNCTG	1 cut(s)	217
ApoI	RAATTY	5 cut(s)	410, 431, 491, 761, 1206
ArsI	GACNNNNNNTTYG	2 cut(s)	461, 493
AsuHPI	GGTGA	5 cut(s)	154, 461, 518, 557, 986
AvaII	GGWCC	4 cut(s)	394, 608, 1271, 1316
AxyI	CCTNAGG	1 cut(s)	390
BaeGI	GKGCMC	1 cut(s)	1039
BalI	TGGCCA	5 cut(s)	321, 555, 561, 654, 1514
BanI	GGYRCC	1 cut(s)	1034
Bbv12I	GWGCWC	1 cut(s)	1089
BbvCI	CCTCAGC	1 cut(s)	1614
BceAI	ACGGC	1 cut(s)	1598
BciT130I	CCWGG	1 cut(s)	597
BclI	TGATCA	1 cut(s)	681
BcuI	ACTAGT	1 cut(s)	929
BfaI	CTAG	1 cut(s)	930
BfmI	CTRYAG	2 cut(s)	1469, 1493
BfrI	CTTAAG	1 cut(s)	1046
BglI	GCCNNNNNGGC	3 cut(s)	667, 1224, 1305
BlpI	GCTNAGC	1 cut(s)	252
BmcAI	AGTACT	1 cut(s)	928
Bme1390I	CCNGG	1 cut(s)	597
Bme18I	GGWCC	4 cut(s)	394, 608, 1271, 1316
BmiI	GGNNCC	7 cut(s)	609, 949, 1036, 1236, 1272, 1317, 1419
BmrFI	CCNGG	1 cut(s)	597
BmsI	GCATC	6 cut(s)	115, 358, 582, 624, 1210, 1476
BpmI	CTGGAG	3 cut(s)	32, 1341, 1445
Bpu10I	CCTNAGC	1 cut(s)	1614
Bpu1102I	GCTNAGC	1 cut(s)	252
BpuEI	CTTGAG	1 cut(s)	47
Bsa29I	ATCGAT	1 cut(s)	1385
BsaBI	GATNNNNATC	4 cut(s)	129, 638, 1200, 1665
BsaJI	CCNNGG	2 cut(s)	556, 655
BsaXI	ACNNNNNCTCC	2 cut(s)	433, 463
Bsc4I	CCNNNNNNNGG	3 cut(s)	217, 317, 644
Bse21I	CCTNAGG	1 cut(s)	390
Bse3DI	GCAATG	6 cut(s)	1006, 1159, 1192, 1546, 1552, 1558
Bse8I	GATNNNNATC	4 cut(s)	129, 638, 1200, 1665
BseBI	CCWGG	1 cut(s)	597
BseCI	ATCGAT	1 cut(s)	1385
BseDI	CCNNGG	2 cut(s)	556, 655
BseGI	GGATG	5 cut(s)	144, 433, 823, 973, 1419
BseJI	GATNNNNATC	4 cut(s)	129, 638, 1200, 1665
BseLI	CCNNNNNNNGG	3 cut(s)	217, 317, 644
BseMI	GCAATG	6 cut(s)	1006, 1159, 1192, 1546, 1552, 1558
BseMII	CTCAG	3 cut(s)	266, 317, 1628
BseRI	GAGGAG	5 cut(s)	375, 1182, 1194, 1206, 1602
BseSI	GKGCMC	1 cut(s)	1039
BseYI	CCCAGC	2 cut(s)	210, 275
BshNI	GGYRCC	1 cut(s)	1034
BshVI	ATCGAT	1 cut(s)	1385
BsiHKAI	GWGCWC	1 cut(s)	1089
BslI	CCNNNNNNNGG	3 cut(s)	217, 317, 644
Bsp1286I	GDGCHC	2 cut(s)	1039, 1089
Bsp1407I	TGTACA	1 cut(s)	108
Bsp143I	GATC	5 cut(s)	22, 32, 130, 681, 1636
Bsp1720I	GCTNAGC	1 cut(s)	252
Bsp19I	CCATGG	2 cut(s)	556, 655
BspACI	CCGC	1 cut(s)	720
BspCNI	CTCAG	3 cut(s)	265, 316, 1627
BspDI	ATCGAT	1 cut(s)	1385
BspHI	TCATGA	1 cut(s)	1069
BspLI	GGNNCC	7 cut(s)	609, 949, 1036, 1236, 1272, 1317, 1419
BspMAI	CTGCAG	1 cut(s)	1497
BspPI	GGATC	2 cut(s)	30, 1631
BspT107I	GGYRCC	1 cut(s)	1034
BspTI	CTTAAG	1 cut(s)	1046
BsrDI	GCAATG	6 cut(s)	1006, 1159, 1192, 1546, 1552, 1558
BsrGI	TGTACA	1 cut(s)	108
BssECI	CCNNGG	2 cut(s)	556, 655
BssMI	GATC	5 cut(s)	22, 32, 130, 681, 1636
BssT1I	CCWWGG	2 cut(s)	556, 655
Bst2UI	CCWGG	1 cut(s)	597
Bst4CI	ACNGT	3 cut(s)	148, 473, 1397
Bst6I	CTCTTC	1 cut(s)	876
BstAFI	CTTAAG	1 cut(s)	1046
BstAPI	GCANNNNNTGC	1 cut(s)	1486
BstAUI	TGTACA	1 cut(s)	108
BstC8I	GCNNGC	3 cut(s)	672, 693, 1422
BstDEI	CTNAG	4 cut(s)	252, 303, 390, 1614
BstDSI	CCRYGG	2 cut(s)	556, 655
BstF5I	GGATG	5 cut(s)	144, 433, 823, 973, 1419
BstKTI	GATC	5 cut(s)	25, 35, 133, 684, 1639
BstMBI	GATC	5 cut(s)	22, 32, 130, 681, 1636
BstNI	CCWGG	1 cut(s)	597
BstNSI	RCATGY	3 cut(s)	695, 1561, 1592
BstSCI	CCNGG	1 cut(s)	595
BstSFI	CTRYAG	2 cut(s)	1469, 1493
BstSLI	GKGCMC	1 cut(s)	1039
BstX2I	RGATCY	1 cut(s)	22
BstYI	RGATCY	1 cut(s)	22
Bsu15I	ATCGAT	1 cut(s)	1385
Bsu36I	CCTNAGG	1 cut(s)	390
BsuTUI	ATCGAT	1 cut(s)	1385
BtgI	CCRYGG	2 cut(s)	556, 655
BtsCI	GGATG	5 cut(s)	144, 433, 823, 973, 1419
BtsIMutI	CAGTG	2 cut(s)	478, 1663
Cac8I	GCNNGC	3 cut(s)	672, 693, 1422
CaiI	CAGNNNCTG	1 cut(s)	217
CciI	TCATGA	1 cut(s)	1069
ClaI	ATCGAT	1 cut(s)	1385
Csp6I	GTAC	3 cut(s)	109, 927, 1561
CspCI	CAANNNNNGTGG	4 cut(s)	730, 765, 940, 975
CviQI	GTAC	3 cut(s)	109, 927, 1561
DdeI	CTNAG	4 cut(s)	252, 303, 390, 1614
DpnI	GATC	5 cut(s)	24, 34, 132, 683, 1638
DpnII	GATC	5 cut(s)	22, 32, 130, 681, 1636
EaeI	YGGCCR	6 cut(s)	319, 553, 559, 652, 1512, 1583
Eam1104I	CTCTTC	1 cut(s)	876
EarI	CTCTTC	1 cut(s)	876
Eco130I	CCWWGG	2 cut(s)	556, 655
Eco47I	GGWCC	4 cut(s)	394, 608, 1271, 1316
Eco81I	CCTNAGG	1 cut(s)	390
EcoO109I	RGGNCCY	2 cut(s)	617, 1418
EcoRII	CCWGG	1 cut(s)	595
EcoT14I	CCWWGG	2 cut(s)	556, 655
EcoT22I	ATGCAT	2 cut(s)	693, 1203
ErhI	CCWWGG	2 cut(s)	556, 655
FbaI	TGATCA	1 cut(s)	681
FokI	GGATG	5 cut(s)	151, 440, 830, 980, 1426
FspBI	CTAG	1 cut(s)	930
GsaI	CCCAGC	2 cut(s)	214, 279
GsuI	CTGGAG	3 cut(s)	32, 1341, 1445
HinfI	GANTC	1 cut(s)	1666
HphI	GGTGA	5 cut(s)	154, 461, 518, 557, 986
Hpy166II	GTNNAC	4 cut(s)	40, 109, 611, 1043
Hpy188I	TCNGA	4 cut(s)	267, 306, 1284, 1293
Hpy188III	TCNNGA	2 cut(s)	26, 1070
Hpy8I	GTNNAC	4 cut(s)	40, 109, 611, 1043
HpyAV	CCTTC	7 cut(s)	95, 191, 772, 933, 1045, 1124, 1138
HpyCH4III	ACNGT	3 cut(s)	148, 473, 1397
HpyCH4V	TGCA	8 cut(s)	128, 691, 772, 888, 1201, 1489, 1495, 1580
HpyF3I	CTNAG	4 cut(s)	252, 303, 390, 1614
Ksp22I	TGATCA	1 cut(s)	681
Kzo9I	GATC	5 cut(s)	22, 32, 130, 681, 1636
LmnI	GCTCC	2 cut(s)	1360, 1464
LweI	GCATC	6 cut(s)	115, 358, 582, 624, 1210, 1476
MaeI	CTAG	1 cut(s)	930
MaeIII	GTNAC	1 cut(s)	142
MalI	GATC	5 cut(s)	24, 34, 132, 683, 1638
MboI	GATC	5 cut(s)	22, 32, 130, 681, 1636
MboII	GAAGA	5 cut(s)	524, 640, 817, 893, 1620
MfeI	CAATTG	2 cut(s)	773, 1239
MflI	RGATCY	1 cut(s)	22
MhlI	GDGCHC	2 cut(s)	1039, 1089
MlsI	TGGCCA	5 cut(s)	321, 555, 561, 654, 1514
MluNI	TGGCCA	5 cut(s)	321, 555, 561, 654, 1514
MmeI	TCCRAC	1 cut(s)	1671
Mox20I	TGGCCA	5 cut(s)	321, 555, 561, 654, 1514
Mph1103I	ATGCAT	2 cut(s)	693, 1203
MscI	TGGCCA	5 cut(s)	321, 555, 561, 654, 1514
MseI	TTAA	4 cut(s)	180, 189, 918, 1047
MslI	CAYNNNNRTG	5 cut(s)	377, 555, 1032, 1514, 1520
Msp20I	TGGCCA	5 cut(s)	321, 555, 561, 654, 1514
MspA1I	CMGCKG	1 cut(s)	1492
MspCI	CTTAAG	1 cut(s)	1046
MspR9I	CCNGG	1 cut(s)	597
MunI	CAATTG	2 cut(s)	773, 1239
MvaI	CCWGG	1 cut(s)	597
NcoI	CCATGG	2 cut(s)	556, 655
NdeII	GATC	5 cut(s)	22, 32, 130, 681, 1636
NlaIV	GGNNCC	7 cut(s)	609, 949, 1036, 1236, 1272, 1317, 1419
NmuCI	GTSAC	1 cut(s)	142
NsiI	ATGCAT	2 cut(s)	693, 1203
NspI	RCATGY	3 cut(s)	695, 1561, 1592
PaeI	GCATGC	1 cut(s)	695
PagI	TCATGA	1 cut(s)	1069
PfeI	GAWTC	1 cut(s)	1666
PflMI	CCANNNNNTGG	2 cut(s)	217, 317
PsiI	TTATAA	1 cut(s)	1437
Psp6I	CCWGG	1 cut(s)	595
PspFI	CCCAGC	2 cut(s)	210, 275
PspGI	CCWGG	1 cut(s)	595
PspN4I	GGNNCC	7 cut(s)	609, 949, 1036, 1236, 1272, 1317, 1419
PstI	CTGCAG	1 cut(s)	1497
PstNI	CAGNNNCTG	1 cut(s)	217
PsuI	RGATCY	1 cut(s)	22
PvuII	CAGCTG	1 cut(s)	1492
RsaI	GTAC	3 cut(s)	110, 928, 1562
RsaNI	GTAC	3 cut(s)	109, 927, 1561
RseI	CAYNNNNRTG	5 cut(s)	377, 555, 1032, 1514, 1520
SaqAI	TTAA	4 cut(s)	180, 189, 918, 1047
Sau3AI	GATC	5 cut(s)	22, 32, 130, 681, 1636
ScaI	AGTACT	1 cut(s)	928
ScrFI	CCNGG	1 cut(s)	597
SduI	GDGCHC	2 cut(s)	1039, 1089
SfaNI	GCATC	6 cut(s)	115, 358, 582, 624, 1210, 1476
SfcI	CTRYAG	2 cut(s)	1469, 1493
SfiI	GGCCNNNNNGGCC	3 cut(s)	667, 1224, 1305
SinI	GGWCC	4 cut(s)	394, 608, 1271, 1316
SmiMI	CAYNNNNRTG	5 cut(s)	377, 555, 1032, 1514, 1520
SmlI	CTYRAG	2 cut(s)	26, 1046
SmoI	CTYRAG	2 cut(s)	26, 1046
SpeI	ACTAGT	1 cut(s)	929
SphI	GCATGC	1 cut(s)	695
SsiI	CCGC	1 cut(s)	720
SspI	AATATT	2 cut(s)	52, 160
SspMI	CTAG	1 cut(s)	930
StyD4I	CCNGG	1 cut(s)	595
StyI	CCWWGG	2 cut(s)	556, 655
TaaI	ACNGT	3 cut(s)	148, 473, 1397
TaqI	TCGA	1 cut(s)	1385
TatI	WGTACW	2 cut(s)	108, 926
TfiI	GAWTC	1 cut(s)	1666
Tru1I	TTAA	4 cut(s)	180, 189, 918, 1047
Tru9I	TTAA	4 cut(s)	180, 189, 918, 1047
TscAI	CASTG	2 cut(s)	478, 1663
TseFI	GTSAC	1 cut(s)	142
Tsp45I	GTSAC	1 cut(s)	142
TspRI	CASTG	2 cut(s)	478, 1663
Van91I	CCANNNNNTGG	2 cut(s)	217, 317
Vha464I	CTTAAG	1 cut(s)	1046
VpaK11BI	GGWCC	4 cut(s)	394, 608, 1271, 1316
XapI	RAATTY	5 cut(s)	410, 431, 491, 761, 1206
XceI	RCATGY	3 cut(s)	695, 1561, 1592
XcmI	CCANNNNNNNNNTGG	1 cut(s)	662
XspI	CTAG	1 cut(s)	930
ZrmI	AGTACT	1 cut(s)	928
Zsp2I	ATGCAT	2 cut(s)	693, 1203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.