Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0007986

Physical Location & Seq

Genomic Coordinates Reverse (-)

46284100 .. 46286497

Gene Structure 2398 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00425300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1725 bp

ATGAATAAGCAAGACTTCATGAAGATTCAGAGCTGTGTTCTCAGAGTGAACATCCACTGTGAAGGTTGCAAGCAGAAAGTTAAGAAATTGGTGCAGAAAATTGATGGTGTGTTTACTACCAGTATAGATGCGGAGCAAGGAAAAGTTACTGTCACAGGGAACGTAGATCCAGCCACAATCATCAAGAAGCTTGAAAAGTCAGGCAAACATGCAGAGCTTTGGGGGGAGGAGGAGGAGGAGGAGGACAGAAGGAATCATGGCAAAGGGGGAAAAGACAATGGTAGTAACAAGGCTCAGAAGGGTGGTGGTGGAAACCAACAGAAGGGCAATAATGTCCAGCAACAAATTCAGCAGCAACAGCAGATGATGAAAGGGGCTAAGGTGATGATGCCAACGAAGGAGCAGAACAAGTCTGTTAAGTTCACTTTGCCTGCTGAGGAGTTTAGTGATGGTGAGTTTGATGATGAGTTTGATGATGATGAATATGATGATGATGAGTTTGATGAGGATTATGATGATGATGAGGAGGAAGAGCTTAACCATGGTCATGGCCATGGCCATCAGGTACCTCCCAACAAGATGATGATGATGCCTGGTATGGGTGCAAATGGGCCACAAGGGCCTTATGGGAAGATGATGCCTGTGATGGGTAATAATGGGCATGGGCCACACGGACCGGGTGGGATGTTCAATATGAATGCTCTGGGCGGCAAGAAGTTAGGTGGTGGAGGTGGTGGTGGTGGTGGAGCAGGGTCTGTCAAGAAAGGTGAGGTTATTGATTTCCCAATGCAAGGGATGAAGGGCATAGGTGGAAATAAGGAAAAGAAGGATGGCAAGGGAGGAAAGAAAGGGGGAGGTGATGATGAGAAGGGCAAGAGCAAGAAAAAGAGCAAGGGGGGTAAAGATGGTAAAGGAGGTAAAGACAAAAGTGAGGGTAAAAAGGGTGGGTTGCTTGGGTGGCTTAGCAGAAGCACCAGTAAAAAAGAGAGTGATGGAAACCACAAGGGGGGCAAGGGAAGTAAAAAAGGTGGTGATAAGTATGATGATTTCATGGAAATTGATGTCATGAATCATAAGAAAGGAGGCAAAGGAGGCAAAGAAGGTAAAGAAACCAAGGAAAGCAAAGAAGGCAAAGGAAGCAAAGGAGGCAAAGGTGGTGGTGGCAATGGTGGAGATGTTCATCAAATGGGTCAAAAGGGCCAAATGGGCCATATGGGCCAGGCAGGTCAGATGGGGCATATGGGCCAAATGGGTCAAATGGGCAATATGGGTCAGATGGGCCATATGGGGCAGATGAGGCCAATGGGCCAAATGGGGCGTGGAGGTGAGAATATGGGTCAGATGGGTAACTACCCAATGGGCAGTATGGGTCAGATGGGCAATGTGCCTGCAGTACAAGGACTACCTGCACCAGGGATGATGAACGGTGGCGGTGGTGGCGGCTATTATCAAGGGATGGGAAATGCCGGAAATCCCTATACTCAACAGCAGCTCCAGCAACAGCAACAACAGCTCCAGCAGCAGCAATATATAGCTATGATGATGAATCAGCAACAGCAGCAGCAAAGGGCTAATGGGAATGACATGTACCAACCCATGATGTATGCGCGGCCACAGCCACCGATGAACTACATGCCCCATCAGCCAATGCCTTCAGCAGCGCCATCTGAGCCTTACACTAACTTCTTCAGTGATGAGAATGCCAACAGTTGCAGCGTCATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0009506 GO:0009987 GO:0019725 GO:0030001 GO:0030003 GO:0030054 GO:0042592 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055044 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

574

Amino Acids

61.39

Weight (kDa)

8.46

Isoelectric Point (pI)

43.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMA	PF00403	14 - 70	5.5e-15	Heavy-metal-associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007986)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05220 AT3G05220
fragaria_vesca	FvH4_6g05480 FvH4_6g05480 FvH4_6g05480 FvH4_6g05480
malus_domestica	MD04G1208200.v1.1 MD12G1222200.v1.1
prunus_persica	Prupe.6G329100_v2.0.a1 Prupe.6G329100_v2.0.a1
pyrus_communis	pycom04g18420 pycom12g20840
rosa_chinensis	RchiOBHm_Chr3g0454261
rosa_laevigata	RLG00000025471
rosa_multiflora	Rmu_sc0005231.1_g000005
rosa_roxburghii	Rroxscaffold_165G00437040 Rroxscaffold_6G00425300
rosa_rugosa	Rorug02G0653600
rosa_samantha	Rh3AG057200 Rh3BG058700 Rh3CG057900 Rh3DG059200
rosa_wichuraiana	Rw0G001730 Rw3G004400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	1214, 1414
Acc65I	GGTACC	1 cut(s)	565
AccB1I	GGYRCC	1 cut(s)	565
AccII	CGCG	1 cut(s)	1609
AciI	CCGC	5 cut(s)	131, 708, 1431, 1440, 1609
AclWI	GGATC	1 cut(s)	161
AcoI	YGGCCR	3 cut(s)	550, 556, 1610
AcsI	RAATTY	1 cut(s)	345
AcuI	CTGAAG	2 cut(s)	1638, 1672
AfaI	GTAC	3 cut(s)	567, 1395, 1589
AfiI	CCNNNNNNNGG	6 cut(s)	322, 599, 647, 791, 1006, 1412
AflIII	ACRYGT	1 cut(s)	1584
AgsI	TTSAA	2 cut(s)	194, 691
AjnI	CCWGG	3 cut(s)	592, 1218, 1411
AluBI	AGCT	7 cut(s)	33, 190, 217, 535, 1492, 1513, 1535
AluI	AGCT	7 cut(s)	33, 190, 217, 535, 1492, 1513, 1535
AlwI	GGATC	1 cut(s)	161
AlwNI	CAGNNNCTG	1 cut(s)	755
ApeKI	GCWGC	8 cut(s)	352, 1489, 1519, 1522, 1558, 1561, 1658, 1713
ApoI	RAATTY	1 cut(s)	345
Asp718I	GGTACC	1 cut(s)	565
AspLEI	GCGC	2 cut(s)	1609, 1663
AsuC2I	CCSGG	1 cut(s)	678
AsuHPI	GGTGA	6 cut(s)	394, 464, 779, 869, 1043, 1337
AvaII	GGWCC	1 cut(s)	674
BalI	TGGCCA	2 cut(s)	552, 558
BanI	GGYRCC	1 cut(s)	565
BbvCI	CCTCAGC	1 cut(s)	435
BbvI	GCAGC	7 cut(s)	364, 1501, 1531, 1534, 1570, 1573, 1670
BciT130I	CCWGG	3 cut(s)	594, 1220, 1413
BcnI	CCSGG	1 cut(s)	678
BfmI	CTRYAG	1 cut(s)	1389
BfoI	RGCGCY	1 cut(s)	1664
BfuAI	ACCTGC	2 cut(s)	1214, 1414
BglI	GCCNNNNNGGC	3 cut(s)	619, 1206, 1215
BlpI	GCTNAGC	1 cut(s)	962
Bme1390I	CCNGG	4 cut(s)	594, 678, 1220, 1413
Bme18I	GGWCC	1 cut(s)	674
BmiI	GGNNCC	1 cut(s)	567
BmrFI	CCNGG	4 cut(s)	594, 678, 1220, 1413
BmsI	GCATC	4 cut(s)	118, 378, 579, 627
BpmI	CTGGAG	2 cut(s)	1478, 1499
Bpu10I	CCTNAGC	2 cut(s)	378, 435
Bpu1102I	GCTNAGC	1 cut(s)	962
BpuMI	CCSGG	1 cut(s)	678
BsaBI	GATNNNNATC	1 cut(s)	1179
BsaJI	CCNNGG	4 cut(s)	541, 553, 1113, 1412
BsaXI	ACNNNNNCTCC	4 cut(s)	1476, 1497, 1506, 1527
Bsc4I	CCNNNNNNNGG	6 cut(s)	322, 599, 647, 791, 1006, 1412
Bse1I	ACTGG	2 cut(s)	120, 975
Bse3DI	GCAATG	2 cut(s)	1171, 1387
Bse8I	GATNNNNATC	1 cut(s)	1179
BseBI	CCWGG	3 cut(s)	594, 1220, 1413
BseDI	CCNNGG	4 cut(s)	541, 553, 1113, 1412
BseGI	GGATG	6 cut(s)	51, 690, 801, 835, 1422, 1461
BseJI	GATNNNNATC	1 cut(s)	1179
BseLI	CCNNNNNNNGG	6 cut(s)	322, 599, 647, 791, 1006, 1412
BseMI	GCAATG	2 cut(s)	1171, 1387
BseMII	CTCAG	4 cut(s)	55, 308, 426, 1659
BseNI	ACTGG	2 cut(s)	120, 975
BseRI	GAGGAG	7 cut(s)	242, 245, 248, 251, 254, 452, 539
BseXI	GCAGC	7 cut(s)	364, 1501, 1531, 1534, 1570, 1573, 1670
BsgI	GTGCAG	2 cut(s)	113, 1392
Bsh1236I	CGCG	1 cut(s)	1609
BshNI	GGYRCC	1 cut(s)	565
BsiSI	CCGG	2 cut(s)	677, 1467
BslI	CCNNNNNNNGG	6 cut(s)	322, 599, 647, 791, 1006, 1412
BsmI	GAATGC	2 cut(s)	703, 1705
Bsp143I	GATC	1 cut(s)	166
Bsp1720I	GCTNAGC	1 cut(s)	962
Bsp19I	CCATGG	2 cut(s)	541, 553
BspACI	CCGC	5 cut(s)	131, 708, 1431, 1440, 1609
BspCNI	CTCAG	4 cut(s)	54, 307, 427, 1660
BspFNI	CGCG	1 cut(s)	1609
BspHI	TCATGA	2 cut(s)	18, 1065
BspLI	GGNNCC	1 cut(s)	567
BspMAI	CTGCAG	1 cut(s)	1393
BspMI	ACCTGC	2 cut(s)	1214, 1414
BspPI	GGATC	1 cut(s)	161
BspQI	GCTCTTC	1 cut(s)	525
BspT107I	GGYRCC	1 cut(s)	565
BsrDI	GCAATG	2 cut(s)	1171, 1387
BsrI	ACTGG	2 cut(s)	120, 975
BssECI	CCNNGG	4 cut(s)	541, 553, 1113, 1412
BssMI	GATC	1 cut(s)	166
BssT1I	CCWWGG	3 cut(s)	541, 553, 1113
Bst2UI	CCWGG	3 cut(s)	594, 1220, 1413
Bst4CI	ACNGT	4 cut(s)	59, 151, 1427, 1709
Bst6I	CTCTTC	1 cut(s)	525
BstC8I	GCNNGC	3 cut(s)	71, 432, 1389
BstDEI	CTNAG	6 cut(s)	41, 294, 378, 435, 962, 1668
BstDSI	CCRYGG	2 cut(s)	541, 553
BstENI	CCTNNNNNAGG	1 cut(s)	1410
BstF5I	GGATG	6 cut(s)	51, 690, 801, 835, 1422, 1461
BstFNI	CGCG	1 cut(s)	1609
BstH2I	RGCGCY	1 cut(s)	1664
BstHHI	GCGC	2 cut(s)	1609, 1663
BstKTI	GATC	1 cut(s)	169
BstMBI	GATC	1 cut(s)	166
BstNI	CCWGG	3 cut(s)	594, 1220, 1413
BstNSI	RCATGY	3 cut(s)	212, 1588, 1636
BstSCI	CCNGG	4 cut(s)	592, 676, 1218, 1411
BstSFI	CTRYAG	1 cut(s)	1389
BstUI	CGCG	1 cut(s)	1609
BstV1I	GCAGC	7 cut(s)	364, 1501, 1531, 1534, 1570, 1573, 1670
BstX2I	RGATCY	1 cut(s)	166
BstXI	CCANNNNNNTGG	1 cut(s)	548
BstYI	RGATCY	1 cut(s)	166
BtgI	CCRYGG	2 cut(s)	541, 553
BtsCI	GGATG	6 cut(s)	51, 690, 801, 835, 1422, 1461
BtsIMutI	CAGTG	2 cut(s)	55, 1696
BveI	ACCTGC	2 cut(s)	1214, 1414
Cac8I	GCNNGC	3 cut(s)	71, 432, 1389
CaiI	CAGNNNCTG	1 cut(s)	755
CciI	TCATGA	2 cut(s)	18, 1065
CfoI	GCGC	2 cut(s)	1609, 1663
CpoI	CGGWCCG	1 cut(s)	674
CseI	GACGC	1 cut(s)	1705
Csp6I	GTAC	3 cut(s)	566, 1394, 1588
CspCI	CAANNNNNGTGG	2 cut(s)	1138, 1173
CspI	CGGWCCG	1 cut(s)	674
CviQI	GTAC	3 cut(s)	566, 1394, 1588
DdeI	CTNAG	6 cut(s)	41, 294, 378, 435, 962, 1668
DpnI	GATC	1 cut(s)	168
DpnII	GATC	1 cut(s)	166
EaeI	YGGCCR	3 cut(s)	550, 556, 1610
Eam1104I	CTCTTC	1 cut(s)	525
EarI	CTCTTC	1 cut(s)	525
Eco130I	CCWWGG	3 cut(s)	541, 553, 1113
Eco47I	GGWCC	1 cut(s)	674
Eco57I	CTGAAG	2 cut(s)	1638, 1672
EcoNI	CCTNNNNNAGG	1 cut(s)	1410
EcoO109I	RGGNCCY	1 cut(s)	620
EcoRII	CCWGG	3 cut(s)	592, 1218, 1411
EcoT14I	CCWWGG	3 cut(s)	541, 553, 1113
ErhI	CCWWGG	3 cut(s)	541, 553, 1113
FalI	AAGNNNNNCTT	1 cut(s)	31
FauNDI	CATATG	3 cut(s)	1212, 1239, 1284
FokI	GGATG	6 cut(s)	38, 697, 808, 842, 1429, 1468
GlaI	GCGC	2 cut(s)	1608, 1662
GsuI	CTGGAG	2 cut(s)	1478, 1499
HaeII	RGCGCY	1 cut(s)	1664
HapII	CCGG	2 cut(s)	677, 1467
HgaI	GACGC	1 cut(s)	1705
HhaI	GCGC	2 cut(s)	1609, 1663
Hin6I	GCGC	2 cut(s)	1607, 1661
HinP1I	GCGC	2 cut(s)	1607, 1661
HindIII	AAGCTT	1 cut(s)	188
HinfI	GANTC	4 cut(s)	25, 253, 1069, 1546
HpaII	CCGG	2 cut(s)	677, 1467
HphI	GGTGA	6 cut(s)	394, 464, 779, 869, 1043, 1337
Hpy166II	GTNNAC	3 cut(s)	49, 114, 423
Hpy188I	TCNGA	8 cut(s)	30, 44, 297, 1230, 1275, 1341, 1374, 1669
Hpy188III	TCNNGA	4 cut(s)	19, 184, 760, 1066
Hpy8I	GTNNAC	3 cut(s)	49, 114, 423
HpyCH4III	ACNGT	4 cut(s)	59, 151, 1427, 1709
HpyCH4IV	ACGT	1 cut(s)	162
HpyCH4V	TGCA	8 cut(s)	69, 94, 212, 605, 790, 1391, 1409, 1713
HpyF3I	CTNAG	6 cut(s)	41, 294, 378, 435, 962, 1668
HpySE526I	ACGT	1 cut(s)	162
HspAI	GCGC	2 cut(s)	1607, 1661
KpnI	GGTACC	1 cut(s)	569
Kzo9I	GATC	1 cut(s)	166
LguI	GCTCTTC	1 cut(s)	525
LmnI	GCTCC	5 cut(s)	133, 400, 746, 1497, 1518
Lsp1109I	GCAGC	7 cut(s)	364, 1501, 1531, 1534, 1570, 1573, 1670
LweI	GCATC	4 cut(s)	118, 378, 579, 627
MaeII	ACGT	1 cut(s)	162
MaeIII	GTNAC	4 cut(s)	145, 151, 284, 1346
MalI	GATC	1 cut(s)	168
MboI	GATC	1 cut(s)	166
MboII	GAAGA	4 cut(s)	34, 542, 643, 1678
MflI	RGATCY	1 cut(s)	166
MlsI	TGGCCA	2 cut(s)	552, 558
MluCI	AATT	4 cut(s)	86, 99, 345, 1056
MluNI	TGGCCA	2 cut(s)	552, 558
Mox20I	TGGCCA	2 cut(s)	552, 558
MscI	TGGCCA	2 cut(s)	552, 558
MseI	TTAA	3 cut(s)	81, 417, 537
MslI	CAYNNNNRTG	2 cut(s)	546, 552
Msp20I	TGGCCA	2 cut(s)	552, 558
MspI	CCGG	2 cut(s)	677, 1467
MspR9I	CCNGG	4 cut(s)	594, 678, 1220, 1413
Mva1269I	GAATGC	2 cut(s)	703, 1705
MvaI	CCWGG	3 cut(s)	594, 1220, 1413
MvnI	CGCG	1 cut(s)	1609
NciI	CCSGG	1 cut(s)	678
NcoI	CCATGG	2 cut(s)	541, 553
NdeI	CATATG	3 cut(s)	1212, 1239, 1284
NdeII	GATC	1 cut(s)	166
NlaIV	GGNNCC	1 cut(s)	567
NmuCI	GTSAC	1 cut(s)	151
NspI	RCATGY	3 cut(s)	212, 1588, 1636
PagI	TCATGA	2 cut(s)	18, 1065
PciI	ACATGT	1 cut(s)	1584
PciSI	GCTCTTC	1 cut(s)	525
PctI	GAATGC	2 cut(s)	703, 1705
PfeI	GAWTC	4 cut(s)	25, 253, 1069, 1546
PscI	ACATGT	1 cut(s)	1584
Psp6I	CCWGG	3 cut(s)	592, 1218, 1411
PspGI	CCWGG	3 cut(s)	592, 1218, 1411
PspN4I	GGNNCC	1 cut(s)	567
PstI	CTGCAG	1 cut(s)	1393
PstNI	CAGNNNCTG	1 cut(s)	755
PsuI	RGATCY	1 cut(s)	166
RsaI	GTAC	3 cut(s)	567, 1395, 1589
RsaNI	GTAC	3 cut(s)	566, 1394, 1588
RseI	CAYNNNNRTG	2 cut(s)	546, 552
Rsr2I	CGGWCCG	1 cut(s)	674
RsrII	CGGWCCG	1 cut(s)	674
SapI	GCTCTTC	1 cut(s)	525
SaqAI	TTAA	3 cut(s)	81, 417, 537
Sau3AI	GATC	1 cut(s)	166
ScrFI	CCNGG	4 cut(s)	594, 678, 1220, 1413
SfaNI	GCATC	4 cut(s)	118, 378, 579, 627
SfcI	CTRYAG	1 cut(s)	1389
SfiI	GGCCNNNNNGGCC	3 cut(s)	619, 1206, 1215
SinI	GGWCC	1 cut(s)	674
SmiMI	CAYNNNNRTG	2 cut(s)	546, 552
Sse9I	AATT	4 cut(s)	86, 99, 345, 1056
SsiI	CCGC	5 cut(s)	131, 708, 1431, 1440, 1609
StyD4I	CCNGG	4 cut(s)	592, 676, 1218, 1411
StyI	CCWWGG	3 cut(s)	541, 553, 1113
TaaI	ACNGT	4 cut(s)	59, 151, 1427, 1709
TaiI	ACGT	1 cut(s)	165
TasI	AATT	4 cut(s)	86, 99, 345, 1056
TatI	WGTACW	1 cut(s)	1393
TauI	GCSGC	3 cut(s)	711, 1443, 1612
TfiI	GAWTC	4 cut(s)	25, 253, 1069, 1546
Tru1I	TTAA	3 cut(s)	81, 417, 537
Tru9I	TTAA	3 cut(s)	81, 417, 537
TscAI	CASTG	2 cut(s)	62, 1696
TseFI	GTSAC	1 cut(s)	151
TseI	GCWGC	8 cut(s)	352, 1489, 1519, 1522, 1558, 1561, 1658, 1713
Tsp45I	GTSAC	1 cut(s)	151
TspGWI	ACGGA	1 cut(s)	687
TspRI	CASTG	2 cut(s)	62, 1696
VpaK11BI	GGWCC	1 cut(s)	674
XagI	CCTNNNNNAGG	1 cut(s)	1410
XapI	RAATTY	1 cut(s)	345
XceI	RCATGY	3 cut(s)	212, 1588, 1636
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1316

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.