Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0007986

Physical Location & Seq

Genomic Coordinates Reverse (-)

45898349 .. 45900358

Gene Structure 2010 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025471

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1749 bp

ATGAATAAGCAAGACTTCATGAAGATTCAGAGCTGTGTTCTCAGAGTGAACATCCACTGTGAAGGCTGTAAGCAGAAAGTTAAGAAATTGGTGCAGAAAATTGATGGCGTGTTTACTACCAGTATAGATGCAGAGCAAGGAAAAGTTACTGTCACAGGGAACGTAGATCCAGCTACAATCATCAAGAAGCTTGAAAAGTCAGGCAAACATGCAGAGCTTTGGGGAGGGGGAGGAGGAGGAGGACAGAAGGGTAATTCCCAAGCCCAGCAGTTCAAGAACATGTCAATGGAGAATCATGGCAAAGGGGGAAAGGACAAAGGTAGTAACAAGGCTCAGAAGGGTGGTGGTGGTGGTGGTGGAAACCAACAGAAGGGCAATAATGTCCAGCAACAAATTCAGCAGCAACAGCAGATGATGAAAGGGGCTAAGGTGATGATGCCAACGAAGGAGCAGAACAAGTCTGTTAAGTTCACTTTGCCTGCTGAGGAGGAGTTTAGTGATGGTGAGTTTGATGATGAGTTTGATGATGATGATTATGATGATGATGAGTTTGATGATGAGGATTATGAAGATGACGAGGAAGAAGAGCTTAACCATGGCCATGGACATCAGTTACCACCCAACAAGATGATGATGATGATGGGTGCAAATGGGCCACAAGGGCCTTATGGGAAGATGATGCCTGTGATGGGTAATAATGGACACGGGCCGGGTGGGATGGTCAATATGAATGCTATGGGCGGCAAGAAGTTAGGTGGTGGAGGTGGGGGAGGAGGGTCTGTCAAGAAAGGTGAGGTTATTGATTTCCCTATGCAAGGGATGAAGGGCATGGGTGGAAATAAGGAAAAGAAGGATGGCAAAGATGGCAAGGGAGGAAAGAAAGGGGGAGGTGATGATGAGAAGGGCAAGAACAAGAAAAAGAGCAAGGGGGGTAAAGATGGTAAAGGAGGTAAAGACAAAAGTGAGGGTAAAAAGGGTGGGTTGCTTGGGTGGCTTAGCAGAAGCACCAGTAAAAAAGAGAGTGATGGAAACCACAAGGGGGGCAAGGGAGGTAAAAAAGGTGGTGACAAATATGATGATTTCATGGAAATTGATGTCATGAATCATAAGAAAGGAGGCAAAGGAGGTAAAGAAAGCAAGGAAAGCAAAGAAGGCAAAGGAAGCAAAGGAGGCAAAGGTGGTGGTGGCAATGGTGGAGATGTTCATCAAATGGGTCAAAAGGGCCAAATGGGCCATATGGGCCAGGCAGGTCAGATGGGGCATATGGGCCAAATGGGTCAAATGGGCAATATCGGTCAGATGGGCCATATGGGGCAGATGAGGCCAATGGGCCACATGGGGCGTGGAGGTGAGAATATGGGTCAGATGGGTAACTACCCAATGGGCAGTATGGGTCAGATGGGCAATATGCCTGCTGTACAAGGACTACCTGCATCAGGGATGATGAACGGTGGCGGCGGTGGTGGCTATTATCAAGGGATGGGAAATGCCGGAAATCCCTATACTCAACAGCAGCTCCAGCAACAGCAACAACAGCTCCAGCAGCAGCAATATATGGCTATGATGATGAGCCAGCAACAGCAGCAGCAAAGGGCTAATGGGAATGACATGTACCAACCCATGATGTATGCGCGGCCACAGCCACCGATGAACTACATGCCCCATCAGCCAATGCCTTCAGCAGCGCCATCTGAGCCTTACACTAACTTCTTCAGTGATGAGAATGCCAACAGTTGCAGTGTCATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0009506 GO:0009987 GO:0019725 GO:0030001 GO:0030003 GO:0030054 GO:0042592 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055044 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

583

Amino Acids

61.95

Weight (kDa)

8.92

Isoelectric Point (pI)

45.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMA	PF00403	14 - 70	5.6e-15	Heavy-metal-associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007986)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05220 AT3G05220
fragaria_vesca	FvH4_6g05480 FvH4_6g05480 FvH4_6g05480 FvH4_6g05480
malus_domestica	MD04G1208200.v1.1 MD12G1222200.v1.1
prunus_persica	Prupe.6G329100_v2.0.a1 Prupe.6G329100_v2.0.a1
pyrus_communis	pycom04g18420 pycom12g20840
rosa_chinensis	RchiOBHm_Chr3g0454261
rosa_laevigata	RLG00000025471
rosa_multiflora	Rmu_sc0005231.1_g000005
rosa_roxburghii	Rroxscaffold_165G00437040 Rroxscaffold_6G00425300
rosa_rugosa	Rorug02G0653600
rosa_samantha	Rh3AG057200 Rh3BG058700 Rh3CG057900 Rh3DG059200
rosa_wichuraiana	Rw0G001730 Rw3G004400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	1238, 1438
AccII	CGCG	1 cut(s)	1633
AciI	CCGC	4 cut(s)	741, 1455, 1458, 1633
AclWI	GGATC	1 cut(s)	161
AcoI	YGGCCR	2 cut(s)	598, 1634
AcsI	RAATTY	1 cut(s)	393
AcuI	CTGAAG	2 cut(s)	1662, 1696
AfaI	GTAC	2 cut(s)	1419, 1613
AfiI	CCNNNNNNNGG	5 cut(s)	370, 689, 815, 1039, 1436
AflIII	ACRYGT	2 cut(s)	279, 1608
AgsI	TTSAA	2 cut(s)	194, 274
AjnI	CCWGG	1 cut(s)	1242
AluBI	AGCT	7 cut(s)	33, 173, 190, 217, 589, 1516, 1537
AluI	AGCT	7 cut(s)	33, 173, 190, 217, 589, 1516, 1537
AlwI	GGATC	1 cut(s)	161
ApeKI	GCWGC	7 cut(s)	400, 1513, 1543, 1546, 1582, 1585, 1682
ApoI	RAATTY	1 cut(s)	393
AspLEI	GCGC	2 cut(s)	1633, 1687
AspS9I	GGNCC	9 cut(s)	653, 662, 707, 1222, 1231, 1240, 1267, 1303, 1330
AsuC2I	CCSGG	1 cut(s)	711
AsuHPI	GGTGA	6 cut(s)	442, 515, 803, 902, 1076, 1361
BalI	TGGCCA	1 cut(s)	600
BbvCI	CCTCAGC	1 cut(s)	483
BbvI	GCAGC	7 cut(s)	412, 1525, 1555, 1558, 1594, 1597, 1694
BciT130I	CCWGG	1 cut(s)	1244
BcnI	CCSGG	1 cut(s)	711
BfoI	RGCGCY	1 cut(s)	1688
BfuAI	ACCTGC	2 cut(s)	1238, 1438
BglI	GCCNNNNNGGC	3 cut(s)	661, 1230, 1239
BlpI	GCTNAGC	1 cut(s)	995
Bme1390I	CCNGG	2 cut(s)	711, 1244
BmgT120I	GGNCC	9 cut(s)	653, 662, 707, 1222, 1231, 1240, 1267, 1303, 1330
BmrFI	CCNGG	2 cut(s)	711, 1244
BmsI	GCATC	4 cut(s)	118, 426, 669, 1442
BpmI	CTGGAG	2 cut(s)	1502, 1523
Bpu10I	CCTNAGC	2 cut(s)	426, 483
Bpu1102I	GCTNAGC	1 cut(s)	995
BpuMI	CCSGG	1 cut(s)	711
BsaBI	GATNNNNATC	1 cut(s)	1203
BsaJI	CCNNGG	2 cut(s)	595, 601
BsaXI	ACNNNNNCTCC	6 cut(s)	765, 795, 1500, 1521, 1530, 1551
Bsc4I	CCNNNNNNNGG	5 cut(s)	370, 689, 815, 1039, 1436
Bse1I	ACTGG	2 cut(s)	120, 1008
Bse3DI	GCAATG	1 cut(s)	1195
Bse8I	GATNNNNATC	1 cut(s)	1203
BseBI	CCWGG	1 cut(s)	1244
BseDI	CCNNGG	2 cut(s)	595, 601
BseGI	GGATG	6 cut(s)	51, 723, 825, 859, 1446, 1485
BseJI	GATNNNNATC	1 cut(s)	1203
BseLI	CCNNNNNNNGG	5 cut(s)	370, 689, 815, 1039, 1436
BseMI	GCAATG	1 cut(s)	1195
BseMII	CTCAG	4 cut(s)	55, 347, 474, 1683
BseNI	ACTGG	2 cut(s)	120, 1008
BseRI	GAGGAG	6 cut(s)	246, 249, 252, 500, 503, 786
BseXI	GCAGC	7 cut(s)	412, 1525, 1555, 1558, 1594, 1597, 1694
BseYI	CCCAGC	1 cut(s)	264
BsgI	GTGCAG	1 cut(s)	113
Bsh1236I	CGCG	1 cut(s)	1633
BsiSI	CCGG	2 cut(s)	710, 1491
BslI	CCNNNNNNNGG	5 cut(s)	370, 689, 815, 1039, 1436
BsmI	GAATGC	2 cut(s)	736, 1729
Bsp1407I	TGTACA	1 cut(s)	1417
Bsp143I	GATC	1 cut(s)	166
Bsp1720I	GCTNAGC	1 cut(s)	995
Bsp19I	CCATGG	2 cut(s)	595, 601
BspACI	CCGC	4 cut(s)	741, 1455, 1458, 1633
BspCNI	CTCAG	4 cut(s)	54, 346, 475, 1684
BspFNI	CGCG	1 cut(s)	1633
BspHI	TCATGA	2 cut(s)	18, 1098
BspMI	ACCTGC	2 cut(s)	1238, 1438
BspPI	GGATC	1 cut(s)	161
BspQI	GCTCTTC	1 cut(s)	579
BsrDI	GCAATG	1 cut(s)	1195
BsrGI	TGTACA	1 cut(s)	1417
BsrI	ACTGG	2 cut(s)	120, 1008
BssECI	CCNNGG	2 cut(s)	595, 601
BssMI	GATC	1 cut(s)	166
BssT1I	CCWWGG	2 cut(s)	595, 601
Bst2UI	CCWGG	1 cut(s)	1244
Bst4CI	ACNGT	4 cut(s)	59, 151, 1451, 1733
Bst6I	CTCTTC	1 cut(s)	579
BstAUI	TGTACA	1 cut(s)	1417
BstC8I	GCNNGC	3 cut(s)	480, 1413, 1574
BstDEI	CTNAG	6 cut(s)	41, 333, 426, 483, 995, 1692
BstDSI	CCRYGG	2 cut(s)	595, 601
BstENI	CCTNNNNNAGG	2 cut(s)	813, 1434
BstF5I	GGATG	6 cut(s)	51, 723, 825, 859, 1446, 1485
BstFNI	CGCG	1 cut(s)	1633
BstH2I	RGCGCY	1 cut(s)	1688
BstHHI	GCGC	2 cut(s)	1633, 1687
BstKTI	GATC	1 cut(s)	169
BstMBI	GATC	1 cut(s)	166
BstNI	CCWGG	1 cut(s)	1244
BstNSI	RCATGY	4 cut(s)	212, 283, 1612, 1660
BstSCI	CCNGG	2 cut(s)	709, 1242
BstUI	CGCG	1 cut(s)	1633
BstV1I	GCAGC	7 cut(s)	412, 1525, 1555, 1558, 1594, 1597, 1694
BstX2I	RGATCY	1 cut(s)	166
BstXI	CCANNNNNNTGG	1 cut(s)	602
BstYI	RGATCY	1 cut(s)	166
BtgI	CCRYGG	2 cut(s)	595, 601
BtsCI	GGATG	6 cut(s)	51, 723, 825, 859, 1446, 1485
BtsI	GCAGTG	1 cut(s)	1744
BtsIMutI	CAGTG	3 cut(s)	55, 1720, 1744
BveI	ACCTGC	2 cut(s)	1238, 1438
Cac8I	GCNNGC	3 cut(s)	480, 1413, 1574
CciI	TCATGA	2 cut(s)	18, 1098
CfoI	GCGC	2 cut(s)	1633, 1687
Cfr13I	GGNCC	9 cut(s)	653, 662, 707, 1222, 1231, 1240, 1267, 1303, 1330
Csp6I	GTAC	2 cut(s)	1418, 1612
CspCI	CAANNNNNGTGG	2 cut(s)	1162, 1197
CviQI	GTAC	2 cut(s)	1418, 1612
DdeI	CTNAG	6 cut(s)	41, 333, 426, 483, 995, 1692
DpnI	GATC	1 cut(s)	168
DpnII	GATC	1 cut(s)	166
EaeI	YGGCCR	2 cut(s)	598, 1634
Eam1104I	CTCTTC	1 cut(s)	579
EarI	CTCTTC	1 cut(s)	579
Eco130I	CCWWGG	2 cut(s)	595, 601
Eco57I	CTGAAG	2 cut(s)	1662, 1696
EcoNI	CCTNNNNNAGG	2 cut(s)	813, 1434
EcoO109I	RGGNCCY	1 cut(s)	662
EcoRII	CCWGG	1 cut(s)	1242
EcoT14I	CCWWGG	2 cut(s)	595, 601
ErhI	CCWWGG	2 cut(s)	595, 601
FalI	AAGNNNNNCTT	3 cut(s)	31, 573, 605
FauNDI	CATATG	3 cut(s)	1236, 1263, 1308
FokI	GGATG	6 cut(s)	38, 730, 832, 866, 1453, 1492
GlaI	GCGC	2 cut(s)	1632, 1686
GsaI	CCCAGC	1 cut(s)	268
GsuI	CTGGAG	2 cut(s)	1502, 1523
HaeII	RGCGCY	1 cut(s)	1688
HapII	CCGG	2 cut(s)	710, 1491
HhaI	GCGC	2 cut(s)	1633, 1687
Hin6I	GCGC	2 cut(s)	1631, 1685
HinP1I	GCGC	2 cut(s)	1631, 1685
HindIII	AAGCTT	1 cut(s)	188
HinfI	GANTC	3 cut(s)	25, 292, 1102
HpaII	CCGG	2 cut(s)	710, 1491
HphI	GGTGA	6 cut(s)	442, 515, 803, 902, 1076, 1361
Hpy166II	GTNNAC	3 cut(s)	49, 114, 471
Hpy188I	TCNGA	8 cut(s)	30, 44, 336, 1254, 1299, 1365, 1398, 1693
Hpy188III	TCNNGA	5 cut(s)	19, 184, 274, 784, 1099
Hpy8I	GTNNAC	3 cut(s)	49, 114, 471
HpyCH4III	ACNGT	4 cut(s)	59, 151, 1451, 1733
HpyCH4IV	ACGT	1 cut(s)	162
HpyCH4V	TGCA	7 cut(s)	94, 131, 212, 647, 814, 1433, 1737
HpyF3I	CTNAG	6 cut(s)	41, 333, 426, 483, 995, 1692
HpySE526I	ACGT	1 cut(s)	162
HspAI	GCGC	2 cut(s)	1631, 1685
Kzo9I	GATC	1 cut(s)	166
LguI	GCTCTTC	1 cut(s)	579
LmnI	GCTCC	3 cut(s)	448, 1521, 1542
Lsp1109I	GCAGC	7 cut(s)	412, 1525, 1555, 1558, 1594, 1597, 1694
LweI	GCATC	4 cut(s)	118, 426, 669, 1442
MaeII	ACGT	1 cut(s)	162
MaeIII	GTNAC	6 cut(s)	145, 151, 323, 612, 1064, 1370
MalI	GATC	1 cut(s)	168
MboI	GATC	1 cut(s)	166
MboII	GAAGA	6 cut(s)	34, 581, 593, 596, 685, 1702
MflI	RGATCY	1 cut(s)	166
MlsI	TGGCCA	1 cut(s)	600
MluCI	AATT	5 cut(s)	86, 99, 253, 393, 1089
MluNI	TGGCCA	1 cut(s)	600
Mox20I	TGGCCA	1 cut(s)	600
MscI	TGGCCA	1 cut(s)	600
MseI	TTAA	3 cut(s)	81, 465, 591
MslI	CAYNNNNRTG	2 cut(s)	284, 600
Msp20I	TGGCCA	1 cut(s)	600
MspI	CCGG	2 cut(s)	710, 1491
MspR9I	CCNGG	2 cut(s)	711, 1244
Mva1269I	GAATGC	2 cut(s)	736, 1729
MvaI	CCWGG	1 cut(s)	1244
MvnI	CGCG	1 cut(s)	1633
NciI	CCSGG	1 cut(s)	711
NcoI	CCATGG	2 cut(s)	595, 601
NdeI	CATATG	3 cut(s)	1236, 1263, 1308
NdeII	GATC	1 cut(s)	166
NmuCI	GTSAC	2 cut(s)	151, 1064
NspI	RCATGY	4 cut(s)	212, 283, 1612, 1660
PagI	TCATGA	2 cut(s)	18, 1098
PciI	ACATGT	2 cut(s)	279, 1608
PciSI	GCTCTTC	1 cut(s)	579
PctI	GAATGC	2 cut(s)	736, 1729
PfeI	GAWTC	3 cut(s)	25, 292, 1102
PscI	ACATGT	2 cut(s)	279, 1608
Psp6I	CCWGG	1 cut(s)	1242
PspFI	CCCAGC	1 cut(s)	264
PspGI	CCWGG	1 cut(s)	1242
PspPI	GGNCC	9 cut(s)	653, 662, 707, 1222, 1231, 1240, 1267, 1303, 1330
PsuI	RGATCY	1 cut(s)	166
RsaI	GTAC	2 cut(s)	1419, 1613
RsaNI	GTAC	2 cut(s)	1418, 1612
RseI	CAYNNNNRTG	2 cut(s)	284, 600
SapI	GCTCTTC	1 cut(s)	579
SaqAI	TTAA	3 cut(s)	81, 465, 591
Sau3AI	GATC	1 cut(s)	166
Sau96I	GGNCC	9 cut(s)	653, 662, 707, 1222, 1231, 1240, 1267, 1303, 1330
ScrFI	CCNGG	2 cut(s)	711, 1244
SfaNI	GCATC	4 cut(s)	118, 426, 669, 1442
SfiI	GGCCNNNNNGGCC	3 cut(s)	661, 1230, 1239
SmiMI	CAYNNNNRTG	2 cut(s)	284, 600
Sse9I	AATT	5 cut(s)	86, 99, 253, 393, 1089
SsiI	CCGC	4 cut(s)	741, 1455, 1458, 1633
StyD4I	CCNGG	2 cut(s)	709, 1242
StyI	CCWWGG	2 cut(s)	595, 601
TaaI	ACNGT	4 cut(s)	59, 151, 1451, 1733
TaiI	ACGT	1 cut(s)	165
TaqII	GACCGA	1 cut(s)	1283
TasI	AATT	5 cut(s)	86, 99, 253, 393, 1089
TatI	WGTACW	1 cut(s)	1417
TauI	GCSGC	3 cut(s)	744, 1458, 1636
TfiI	GAWTC	3 cut(s)	25, 292, 1102
Tru1I	TTAA	3 cut(s)	81, 465, 591
Tru9I	TTAA	3 cut(s)	81, 465, 591
TscAI	CASTG	3 cut(s)	62, 1720, 1744
TseFI	GTSAC	2 cut(s)	151, 1064
TseI	GCWGC	7 cut(s)	400, 1513, 1543, 1546, 1582, 1585, 1682
Tsp45I	GTSAC	2 cut(s)	151, 1064
TspRI	CASTG	3 cut(s)	62, 1720, 1744
XagI	CCTNNNNNAGG	2 cut(s)	813, 1434
XapI	RAATTY	1 cut(s)	393
XceI	RCATGY	4 cut(s)	212, 283, 1612, 1660
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1340

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.