Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0007986

Physical Location & Seq

Genomic Coordinates Reverse (-)

22174603 .. 22177140

Gene Structure 2538 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g20840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1680 bp

ATGAGTAAACAGGAAGTGATGAAGCTTCAGACCTGTGTTTTCAAAGTTAACATTGACTGTGATGGTTGCAAGCACAAGATAAAGAAATTGCTGCAAAAAATTGATGGTGTGTACACAACAAGTATAGATGCAGAACATAGCAAGGTGACTGTTACGGGGAATGTTGATCCACACACAATCATCAAGAAACTTGAAAAGAAGGGGAAACATGCGGAACTCTGGGGGGGCTCAAAGGGTTCAAATTTCAATCAAGCCCAGCTGAAGAACGTGGCAATGCCGGTACAGAATGCGAAAGGCGGGGGACACCAGCAACAACCACCAAAGGGCGGAGGAGGCCACCAGCAACAACCGCAAAAGGGCAGAGGAGGCAACCAGCAACAGCACCAACAAATGAAAGGAGGTAATGGTAATGTTATGAAGGTGCCTCAGAAGGCCCAGAAGTCTGTGAAGTTCAATCTGCCGGAGGCGGAGGACTTTGACGGTAGCGATTTCGATGAGTTTGATGATGAATTTGATGATGAGTTCGATGATGATGAGTTTGATGATGAAGATTATGATGATGAGGAAGAGCTTGATCATGGACATCATCAGATGGCTAAGAACAAGGTGATGGGTAATATTGTAAATGGGGCACAAGGAGGAGGGCCATATGGGAAAATGATGCCAATGGTGGGTGCTAATCATGGGCATGGCCCACATGGGCCTGCTGGGATGATGAATATGCATGTGATGAACGACAAAAAGTTAGGTGGTGGGGGCGGCGGTGGGGGAGGGTCTGCCAAGAAAGGCGGGGTAATTGATTTCCCTGTGCAAATGAAAGGTATGGGTGGAAATAATGAAAAGAAGAATGGCAAGGATGGAAATGGCGGAAAGAAAGGCGGTGGAAATAGCAAGGGTGGGGACAAGAAACAAGGGGGTAAAAATAAGAAAGAGGGCAAAGATGGCAAAAAAGGAGGTGGGTTGCTAGGGTGGCTCAGCCGGAGTACAAGTATCGGACGCGGCGGTTCCAAAGACGAGAAAGGCAAAGGCAAGGGCAATGGAAGCAAAAAGGGCGGGGGCAAAGATGGAAAAAATGATTTTCATGAGATTGATTTCAAAGGAAAAGATACCAAAGGAGGGAAAGGAGGGAAAGGTGGAAAGGAAAGCAAGGAGGGCAAAAATGGAAAAGGAGCCAAAGAGGGCAAGGGAGGGAAAGGCGCCAAAGGTGGTGATGATGGTGAGGATATCCGGCAAATGGGTTACATGGGCCAAAAGGGACAAATGGGCCAAATGGGTCAAATGGGTCATATGGGAAATATGGGTCAGATGGGGCAGAGACCTCAAATGGGTCAGATGGGTCAAATGGGTAGCTATCCAATGGGGCAGATGGGTAATTTTCCTGCAGTACAAGGACTGCCTGCACAGGCAATGATGAACGGCGGAGGAGGATACTATCAAGGCGGTATGGGTCCCGGAAACCCGTATAATCAGCAGCAGCAACAATACTTGGCCATGATGATGAATCAACAGAGAGCAGCAGCCAACGGTGGGAATGATATGTACCATCCGATGATGTACACCCGCCCGCAGCCGCCGCCGATGAACTACATGCCCCAACAGCCAATGCCATCAGGACCTCCATCTGATCCTTATGCCAACTACTTCAGTGATGAGAACCCTAATGGTTGTAGTATCATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0009506 GO:0009987 GO:0019725 GO:0030001 GO:0030003 GO:0030054 GO:0042592 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055044 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

560

Amino Acids

59.26

Weight (kDa)

9.17

Isoelectric Point (pI)

33.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMA	PF00403	13 - 70	1.4e-15	Heavy-metal-associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007986)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05220 AT3G05220
fragaria_vesca	FvH4_6g05480 FvH4_6g05480 FvH4_6g05480 FvH4_6g05480
malus_domestica	MD04G1208200.v1.1 MD12G1222200.v1.1
prunus_persica	Prupe.6G329100_v2.0.a1 Prupe.6G329100_v2.0.a1
pyrus_communis	pycom04g18420 pycom12g20840
rosa_chinensis	RchiOBHm_Chr3g0454261
rosa_laevigata	RLG00000025471
rosa_multiflora	Rmu_sc0005231.1_g000005
rosa_roxburghii	Rroxscaffold_165G00437040 Rroxscaffold_6G00425300
rosa_rugosa	Rorug02G0653600
rosa_samantha	Rh3AG057200 Rh3BG058700 Rh3CG057900 Rh3DG059200
rosa_wichuraiana	Rw0G001730 Rw3G004400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	421, 1196
AccII	CGCG	1 cut(s)	999
AclWI	GGATC	2 cut(s)	161, 1619
AcoI	YGGCCR	1 cut(s)	1488
AcsI	RAATTY	2 cut(s)	241, 509
AcuI	CTGAAG	3 cut(s)	11, 281, 1627
AcyI	GRCGYC	1 cut(s)	1197
AfaI	GTAC	6 cut(s)	113, 282, 985, 1386, 1541, 1556
AfiI	CCNNNNNNNGG	8 cut(s)	323, 326, 356, 671, 1116, 1234, 1325, 1527
AgsI	TTSAA	6 cut(s)	43, 194, 240, 247, 454, 1096
AluBI	AGCT	4 cut(s)	25, 259, 571, 1350
AluI	AGCT	4 cut(s)	25, 259, 571, 1350
Alw26I	GTCTC	1 cut(s)	1309
AlwI	GGATC	2 cut(s)	161, 1619
AoxI	GGCC	8 cut(s)	334, 432, 644, 691, 701, 1246, 1264, 1488
ApeKI	GCWGC	6 cut(s)	91, 1471, 1474, 1514, 1517, 1567
ApoI	RAATTY	2 cut(s)	241, 509
AspLEI	GCGC	1 cut(s)	1199
AspS9I	GGNCC	8 cut(s)	433, 644, 692, 701, 1246, 1264, 1448, 1613
AsuC2I	CCSGG	1 cut(s)	1452
AsuHPI	GGTGA	4 cut(s)	157, 619, 1220, 1229
AvaII	GGWCC	2 cut(s)	1448, 1613
BaeGI	GKGCMC	1 cut(s)	634
BalI	TGGCCA	1 cut(s)	1490
BanI	GGYRCC	2 cut(s)	421, 1196
BanII	GRGCYC	1 cut(s)	230
BbvI	GCAGC	6 cut(s)	78, 1483, 1486, 1526, 1529, 1579
BceAI	ACGGC	1 cut(s)	1432
BciVI	GTATCC	1 cut(s)	1421
BclI	TGATCA	1 cut(s)	574
BcnI	CCSGG	1 cut(s)	1452
BcoDI	GTCTC	1 cut(s)	1309
BfaI	CTAG	1 cut(s)	965
BfmI	CTRYAG	1 cut(s)	1380
BfoI	RGCGCY	1 cut(s)	1200
BfuI	GTATCC	1 cut(s)	1421
BlpI	GCTNAGC	1 cut(s)	974
Bme1390I	CCNGG	1 cut(s)	1452
Bme18I	GGWCC	2 cut(s)	1448, 1613
BmgT120I	GGNCC	8 cut(s)	433, 644, 692, 701, 1246, 1264, 1448, 1613
BmiI	GGNNCC	6 cut(s)	423, 1006, 1171, 1198, 1449, 1450
BmrFI	CCNGG	1 cut(s)	1452
BmsI	GCATC	2 cut(s)	118, 651
Bpu1102I	GCTNAGC	1 cut(s)	974
BpuMI	CCSGG	1 cut(s)	1452
BsaHI	GRCGYC	1 cut(s)	1197
BsaI	GGTCTC	1 cut(s)	1309
BsaXI	ACNNNNNCTCC	2 cut(s)	973, 1003
Bsc4I	CCNNNNNNNGG	8 cut(s)	323, 326, 356, 671, 1116, 1234, 1325, 1527
Bse118I	RCCGGY	1 cut(s)	277
Bse3DI	GCAATG	3 cut(s)	279, 1042, 1413
BseGI	GGATG	3 cut(s)	717, 862, 1543
BseLI	CCNNNNNNNGG	8 cut(s)	323, 326, 356, 671, 1116, 1234, 1325, 1527
BseMI	GCAATG	3 cut(s)	279, 1042, 1413
BseMII	CTCAG	2 cut(s)	440, 988
BseRI	GAGGAG	4 cut(s)	345, 378, 654, 1437
BseSI	GKGCMC	1 cut(s)	634
BseXI	GCAGC	6 cut(s)	78, 1483, 1486, 1526, 1529, 1579
BseYI	CCCAGC	2 cut(s)	255, 707
BsgI	GTGCAG	1 cut(s)	1383
Bsh1236I	CGCG	1 cut(s)	999
BshFI	GGCC	8 cut(s)	336, 434, 646, 693, 703, 1248, 1266, 1490
BshNI	GGYRCC	2 cut(s)	421, 1196
BsiSI	CCGG	5 cut(s)	278, 461, 979, 1228, 1452
BslFI	GGGAC	4 cut(s)	315, 914, 1269, 1434
BslI	CCNNNNNNNGG	8 cut(s)	323, 326, 356, 671, 1116, 1234, 1325, 1527
BsmAI	GTCTC	1 cut(s)	1309
BsmFI	GGGAC	4 cut(s)	315, 914, 1269, 1434
BsmI	GAATGC	1 cut(s)	292
BsnI	GGCC	8 cut(s)	336, 434, 646, 693, 703, 1248, 1266, 1490
Bso31I	GGTCTC	1 cut(s)	1309
Bsp1286I	GDGCHC	2 cut(s)	230, 634
Bsp1407I	TGTACA	2 cut(s)	111, 1554
Bsp143I	GATC	3 cut(s)	166, 574, 1624
Bsp1720I	GCTNAGC	1 cut(s)	974
BspANI	GGCC	8 cut(s)	336, 434, 646, 693, 703, 1248, 1266, 1490
BspCNI	CTCAG	2 cut(s)	439, 987
BspFNI	CGCG	1 cut(s)	999
BspHI	TCATGA	1 cut(s)	1081
BspLI	GGNNCC	6 cut(s)	423, 1006, 1171, 1198, 1449, 1450
BspMAI	CTGCAG	1 cut(s)	1384
BspPI	GGATC	2 cut(s)	161, 1619
BspQI	GCTCTTC	1 cut(s)	561
BspT107I	GGYRCC	2 cut(s)	421, 1196
BspTNI	GGTCTC	1 cut(s)	1309
BsrDI	GCAATG	3 cut(s)	279, 1042, 1413
BsrFI	RCCGGY	1 cut(s)	277
BsrGI	TGTACA	2 cut(s)	111, 1554
BssAI	RCCGGY	1 cut(s)	277
BssMI	GATC	3 cut(s)	166, 574, 1624
BssNI	GRCGYC	1 cut(s)	1197
Bst4CI	ACNGT	4 cut(s)	59, 151, 482, 1526
Bst6I	CTCTTC	1 cut(s)	561
BstACI	GRCGYC	1 cut(s)	1197
BstAUI	TGTACA	2 cut(s)	111, 1554
BstC8I	GCNNGC	4 cut(s)	71, 705, 1398, 1565
BstDEI	CTNAG	3 cut(s)	426, 597, 974
BstF5I	GGATG	3 cut(s)	717, 862, 1543
BstFNI	CGCG	1 cut(s)	999
BstH2I	RGCGCY	1 cut(s)	1200
BstHHI	GCGC	1 cut(s)	1199
BstKTI	GATC	3 cut(s)	169, 577, 1627
BstMAI	GTCTC	1 cut(s)	1309
BstMBI	GATC	3 cut(s)	166, 574, 1624
BstNSI	RCATGY	3 cut(s)	212, 728, 1591
BstSCI	CCNGG	1 cut(s)	1450
BstSFI	CTRYAG	1 cut(s)	1380
BstSLI	GKGCMC	1 cut(s)	634
BstUI	CGCG	1 cut(s)	999
BstV1I	GCAGC	6 cut(s)	78, 1483, 1486, 1526, 1529, 1579
BsuI	GTATCC	1 cut(s)	1421
BsuRI	GGCC	8 cut(s)	336, 434, 646, 693, 703, 1248, 1266, 1490
BtsCI	GGATG	3 cut(s)	717, 862, 1543
BtsIMutI	CAGTG	1 cut(s)	1651
Cac8I	GCNNGC	4 cut(s)	71, 705, 1398, 1565
CciI	TCATGA	1 cut(s)	1081
CfoI	GCGC	1 cut(s)	1199
Cfr10I	RCCGGY	1 cut(s)	277
Cfr13I	GGNCC	8 cut(s)	433, 644, 692, 701, 1246, 1264, 1448, 1613
CseI	GACGC	1 cut(s)	1005
Csp6I	GTAC	6 cut(s)	112, 281, 984, 1385, 1540, 1555
CviQI	GTAC	6 cut(s)	112, 281, 984, 1385, 1540, 1555
DdeI	CTNAG	3 cut(s)	426, 597, 974
DinI	GGCGCC	1 cut(s)	1198
DpnI	GATC	3 cut(s)	168, 576, 1626
DpnII	GATC	3 cut(s)	166, 574, 1624
EaeI	YGGCCR	1 cut(s)	1488
Eam1104I	CTCTTC	1 cut(s)	561
EarI	CTCTTC	1 cut(s)	561
EciI	GGCGGA	4 cut(s)	342, 482, 882, 1434
Eco24I	GRGCYC	1 cut(s)	230
Eco31I	GGTCTC	1 cut(s)	1309
Eco32I	GATATC	1 cut(s)	1225
Eco47I	GGWCC	2 cut(s)	1448, 1613
Eco57I	CTGAAG	3 cut(s)	11, 281, 1627
EcoO109I	RGGNCCY	2 cut(s)	1448, 1613
EcoRV	GATATC	1 cut(s)	1225
EcoT22I	ATGCAT	1 cut(s)	726
EcoT38I	GRGCYC	1 cut(s)	230
EgeI	GGCGCC	1 cut(s)	1198
EheI	GGCGCC	1 cut(s)	1198
FaqI	GGGAC	4 cut(s)	315, 914, 1269, 1434
FauI	CCCGC	5 cut(s)	290, 782, 1046, 1568, 1572
FauNDI	CATATG	2 cut(s)	649, 1287
FbaI	TGATCA	1 cut(s)	574
FokI	GGATG	3 cut(s)	724, 869, 1530
FriOI	GRGCYC	1 cut(s)	230
FspBI	CTAG	1 cut(s)	965
GlaI	GCGC	1 cut(s)	1198
GsaI	CCCAGC	2 cut(s)	259, 711
HaeII	RGCGCY	1 cut(s)	1200
HaeIII	GGCC	8 cut(s)	336, 434, 646, 693, 703, 1248, 1266, 1490
HapII	CCGG	5 cut(s)	278, 461, 979, 1228, 1452
HgaI	GACGC	1 cut(s)	1005
HhaI	GCGC	1 cut(s)	1199
Hin1I	GRCGYC	1 cut(s)	1197
Hin6I	GCGC	1 cut(s)	1197
HinP1I	GCGC	1 cut(s)	1197
HincII	GTYRAC	1 cut(s)	49
HindII	GTYRAC	1 cut(s)	49
HindIII	AAGCTT	1 cut(s)	23
HinfI	GANTC	1 cut(s)	1501
HpaI	GTTAAC	1 cut(s)	49
HpaII	CCGG	5 cut(s)	278, 461, 979, 1228, 1452
HphI	GGTGA	4 cut(s)	157, 619, 1220, 1229
Hpy166II	GTNNAC	5 cut(s)	8, 49, 112, 114, 1557
Hpy188I	TCNGA	8 cut(s)	30, 429, 591, 995, 1305, 1332, 1548, 1624
Hpy188III	TCNNGA	3 cut(s)	184, 1082, 1611
Hpy8I	GTNNAC	5 cut(s)	8, 49, 112, 114, 1557
HpyAV	CCTTC	3 cut(s)	193, 412, 424
HpyCH4III	ACNGT	4 cut(s)	59, 151, 482, 1526
HpyCH4IV	ACGT	1 cut(s)	267
HpyCH4V	TGCA	7 cut(s)	69, 94, 131, 724, 811, 1382, 1400
HpyF3I	CTNAG	3 cut(s)	426, 597, 974
HpySE526I	ACGT	1 cut(s)	267
Hsp92I	GRCGYC	1 cut(s)	1197
HspAI	GCGC	1 cut(s)	1197
KasI	GGCGCC	1 cut(s)	1196
KflI	GGGWCCC	1 cut(s)	1448
Ksp22I	TGATCA	1 cut(s)	574
KspAI	GTTAAC	1 cut(s)	49
Kzo9I	GATC	3 cut(s)	166, 574, 1624
LguI	GCTCTTC	1 cut(s)	561
LmnI	GCTCC	1 cut(s)	1169
Lsp1109I	GCAGC	6 cut(s)	78, 1483, 1486, 1526, 1529, 1579
LweI	GCATC	2 cut(s)	118, 651
MaeI	CTAG	1 cut(s)	965
MaeII	ACGT	1 cut(s)	267
MaeIII	GTNAC	3 cut(s)	145, 151, 1238
MalI	GATC	3 cut(s)	168, 576, 1626
MboI	GATC	3 cut(s)	166, 574, 1624
MboII	GAAGA	4 cut(s)	274, 560, 578, 856
MhlI	GDGCHC	2 cut(s)	230, 634
MlsI	TGGCCA	1 cut(s)	1490
MluCI	AATT	6 cut(s)	86, 99, 241, 509, 795, 1372
MluNI	TGGCCA	1 cut(s)	1490
Mly113I	GGCGCC	1 cut(s)	1197
Mox20I	TGGCCA	1 cut(s)	1490
Mph1103I	ATGCAT	1 cut(s)	726
MscI	TGGCCA	1 cut(s)	1490
MseI	TTAA	1 cut(s)	48
MslI	CAYNNNNRTG	2 cut(s)	687, 1496
Msp20I	TGGCCA	1 cut(s)	1490
MspA1I	CMGCKG	1 cut(s)	259
MspI	CCGG	5 cut(s)	278, 461, 979, 1228, 1452
MspR9I	CCNGG	1 cut(s)	1452
Mva1269I	GAATGC	1 cut(s)	292
MvnI	CGCG	1 cut(s)	999
NarI	GGCGCC	1 cut(s)	1197
NciI	CCSGG	1 cut(s)	1452
NdeI	CATATG	2 cut(s)	649, 1287
NdeII	GATC	3 cut(s)	166, 574, 1624
NlaIV	GGNNCC	6 cut(s)	423, 1006, 1171, 1198, 1449, 1450
NmuCI	GTSAC	1 cut(s)	145
NsiI	ATGCAT	1 cut(s)	726
NspI	RCATGY	3 cut(s)	212, 728, 1591
PagI	TCATGA	1 cut(s)	1081
PciSI	GCTCTTC	1 cut(s)	561
PctI	GAATGC	1 cut(s)	292
PfeI	GAWTC	1 cut(s)	1501
PfoI	TCCNGGA	1 cut(s)	1450
PluTI	GGCGCC	1 cut(s)	1200
PpuMI	RGGWCCY	2 cut(s)	1448, 1613
Psp5II	RGGWCCY	2 cut(s)	1448, 1613
PspFI	CCCAGC	2 cut(s)	255, 707
PspN4I	GGNNCC	6 cut(s)	423, 1006, 1171, 1198, 1449, 1450
PspPI	GGNCC	8 cut(s)	433, 644, 692, 701, 1246, 1264, 1448, 1613
PspPPI	RGGWCCY	2 cut(s)	1448, 1613
PstI	CTGCAG	1 cut(s)	1384
PvuII	CAGCTG	1 cut(s)	259
RsaI	GTAC	6 cut(s)	113, 282, 985, 1386, 1541, 1556
RsaNI	GTAC	6 cut(s)	112, 281, 984, 1385, 1540, 1555
RseI	CAYNNNNRTG	2 cut(s)	687, 1496
SapI	GCTCTTC	1 cut(s)	561
SaqAI	TTAA	1 cut(s)	48
Sau3AI	GATC	3 cut(s)	166, 574, 1624
Sau96I	GGNCC	8 cut(s)	433, 644, 692, 701, 1246, 1264, 1448, 1613
ScrFI	CCNGG	1 cut(s)	1452
SduI	GDGCHC	2 cut(s)	230, 634
SfaNI	GCATC	2 cut(s)	118, 651
SfcI	CTRYAG	1 cut(s)	1380
SfoI	GGCGCC	1 cut(s)	1198
SinI	GGWCC	2 cut(s)	1448, 1613
SmiMI	CAYNNNNRTG	2 cut(s)	687, 1496
Sse9I	AATT	6 cut(s)	86, 99, 241, 509, 795, 1372
SspDI	GGCGCC	1 cut(s)	1196
SspI	AATATT	1 cut(s)	619
SspMI	CTAG	1 cut(s)	965
StyD4I	CCNGG	1 cut(s)	1450
TaaI	ACNGT	4 cut(s)	59, 151, 482, 1526
TaiI	ACGT	1 cut(s)	270
TaqI	TCGA	2 cut(s)	492, 525
TasI	AATT	6 cut(s)	86, 99, 241, 509, 795, 1372
TatI	WGTACW	4 cut(s)	111, 983, 1384, 1554
TauI	GCSGC	4 cut(s)	762, 1002, 1573, 1576
TfiI	GAWTC	1 cut(s)	1501
Tru1I	TTAA	1 cut(s)	48
Tru9I	TTAA	1 cut(s)	48
TscAI	CASTG	1 cut(s)	1651
TseFI	GTSAC	1 cut(s)	145
TseI	GCWGC	6 cut(s)	91, 1471, 1474, 1514, 1517, 1567
Tsp45I	GTSAC	1 cut(s)	145
TspRI	CASTG	1 cut(s)	1651
VpaK11BI	GGWCC	2 cut(s)	1448, 1613
XapI	RAATTY	2 cut(s)	241, 509
XceI	RCATGY	3 cut(s)	212, 728, 1591
XspI	CTAG	1 cut(s)	965
Zsp2I	ATGCAT	1 cut(s)	726

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.