FvH4_6g05480

mediator of RNA polymerase II transcription subunit

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
3115099 .. 3117804
2706 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g05480.t2

Sequence Viewer

Length: 1821 bp
ATGAACAAGCAAGAGTTCATGAAGATTCAGAGCTGTGTGCTCAGAGTGAACATTCACTGTGAGGGCTGTAAGCAGAAAGTTAAGAAATTGGTGCAGAAAATTGAAGGTGTGTATACAACTAGTATAGATGCAGAGCAAGGCAAAGTGACTGTCACAGGGAACGTAGATCCAGCCACCATCATCAAGAAGCTTGAAAAGAATGGGAAACATGCAGAGCTTTGGGGTGGAGGTGGAGGTGGAGGAGGACAGAAGGGTAATTCTAACCAAGCTCAGCAGTTCAACCCCAACCAGTTCAAGAACATGTCAATGGGGAATCATGGAAAGGGTGGAAAAGACAATGGTAACAGCAAAGCTCAGAAGGGTGGTGGTGGTGGTGGTGGGAAGGACCAACAGAAGGGTATTAATGTCCAGCAGCAAATTCAGCAGCAACAAATTCAGCAGCAACAGCAGATGATGAAGGGGGCTAAGGTGATGATGCCAATGAAGGAGCAGAACAAGTCTGTGAAGTTTAATCTGCCTGCTGAGGAGGAGTTTAGTGATGGTGAGTTTGATGATGAGTTTGATGATGAAGATTATGATGATGATGAGTTTGATGATGAAGATTATGATGATGATGAGGAAGAGGAGGAGCTTAACCATGGCCATCAGGTACATCCCAACAAGGTGATGATGATGCCTGGTATGGGTGCAAATGGGCAACAAGGGCCTTATGGTAAGATGGTGATGCCTGTGATGGGTAATAATGGACATGGGCCACATGGGCCGGGTGGGATGGTGAATATGAATGCTATGGGCGGCAAGAAGTTAGGTGGTGGGGGTGGCGGTGGTGGGGGAGGGTCTGCCAAGAAGGGTGAGGTTATTGATTTCCCTGTGCAAGGGATGAAGGGTATGGGTGGAAATAAGGAGAAGGAGGGCAAAGATGGGAAGGGAGGAAAAAAGAAAGGTAAAGGTGGAGGTGATGATGAAAAGAGCAAGAGTAAGAAAAAGAGCAAGGGTGGTAAAGATGGTAAGGGAGGTAAAGAAGGTAAAGACAAAAGTGAGGGTAAAAAAGGTGGGTTGCTTGGGTGGCTTAGCAGGAGCACCAGTAAAAAAGAGAGTGATGGAAACAGCAAGGGTGGGAAGGGAAGTAAGAAAGGAGGTGACATGTTTGATGATTTTGATGAAATTGAAATCATGAATTACAAGAAAGGAGGCAAAGGTGGCAAAGAAGGTAAAGAAAGCAAGGAAAGCAAAGAAGGCAAGGGAAGCAAGGGAGGCAAAGGTGGTGGTGGCAATGGTGGAGATGTGCATCAAATGGGTCAAAAGGGGCATATGGGCCAGGCGGGTCAGATGGGGCATATGGGCCAAATGGGTCAAATGGGCAATATGGGCCAGATGGGGCAGATGAGGCCTATGGGGCAAATGGGGCAAATGGGCCGCGGAGGTGAGAGTATGGGTCAGATGGGTAACTATCCAATGGGTAATATGGGTCAGATGGGCAATGTGCCTGCAGTACAAGGACTGCCTGCGCCGGGGATGATGAGCCGTGGTGGCGGTGGTGGTGGTGCGGGCTATTACCAAGGAATGGGGAATGCAGGAAACCCATATACTCAACAACAACAGCAGCAGCTCCAGCATCAGCAGTATATGGCAATGATGATGAACCAGCAACAGCAGCCCCAAATGGCTAGTGGGAATGATATGTATCAATCCATGTTGTATGCGCGGCCACAGCCACATATGAACTACATGCCTCATCAGCCAATGCCATCGGCAGGGCCAACCGAGCCTTACACCAACTATTTTAGCGATGAAAATGCCAATAGTTGTACCATCATGTGA

Protein Analysis

607

Amino Acids

64.32

Weight (kDa)

8.76

Isoelectric Point (pI)

43.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1564
AccI GTMKAC 1 cut(s) 113
AccII CGCG 2 cut(s) 1419, 1705
AciI CCGC 8 cut(s) 795, 822, 1322, 1417, 1419, 1533, 1547, 1705
AclWI GGATC 1 cut(s) 161
AcoI YGGCCR 2 cut(s) 640, 1706
AcsI RAATTY 2 cut(s) 417, 432
AfaI GTAC 3 cut(s) 651, 1494, 1810
AfiI CCNNNNNNNGG 7 cut(s) 394, 683, 734, 875, 1511, 1564, 1754
AflIII ACRYGT 2 cut(s) 300, 1143
AgsI TTSAA 5 cut(s) 104, 194, 280, 295, 1169
AhlI ACTAGT 1 cut(s) 119
AjnI CCWGG 2 cut(s) 676, 1317
AluBI AGCT 7 cut(s) 33, 190, 217, 269, 353, 631, 1609
AluI AGCT 7 cut(s) 33, 190, 217, 269, 353, 631, 1609
Alw21I GWGCWC 2 cut(s) 42, 1082
AlwI GGATC 1 cut(s) 161
ApeKI GCWGC 6 cut(s) 412, 424, 439, 1603, 1606, 1654
ApoI RAATTY 2 cut(s) 417, 432
ArsI GACNNNNNNTTYG 2 cut(s) 135, 167
AseI ATTAAT 1 cut(s) 402
AspLEI GCGC 2 cut(s) 1510, 1705
AspS9I GGNCC 9 cut(s) 385, 704, 752, 761, 1315, 1342, 1369, 1414, 1757
AsuC2I CCSGG 2 cut(s) 765, 1512
AsuHPI GGTGA 9 cut(s) 481, 554, 676, 733, 787, 863, 968, 1151, 1436
AvaII GGWCC 1 cut(s) 385
BalI TGGCCA 1 cut(s) 642
Bbv12I GWGCWC 2 cut(s) 42, 1082
BbvCI CCTCAGC 1 cut(s) 522
BbvI GCAGC 6 cut(s) 424, 436, 451, 1615, 1618, 1666
BceAI ACGGC 1 cut(s) 1509
BcgI CGANNNNNNTGC 2 cut(s) 1778, 1812
BciT130I CCWGG 2 cut(s) 678, 1319
BcnI CCSGG 2 cut(s) 765, 1512
BcuI ACTAGT 1 cut(s) 119
BfaI CTAG 2 cut(s) 120, 1668
BfmI CTRYAG 1 cut(s) 1488
BglI GCCNNNNNGGC 3 cut(s) 760, 1396, 1530
BisI GCNGC 9 cut(s) 413, 425, 440, 796, 1417, 1604, 1607, 1655, 1706
BlpI GCTNAGC 2 cut(s) 270, 1070
BlsI GCNGC 9 cut(s) 414, 426, 441, 797, 1418, 1605, 1608, 1656, 1707
Bme1390I CCNGG 4 cut(s) 678, 765, 1319, 1512
Bme18I GGWCC 1 cut(s) 385
BmgT120I GGNCC 9 cut(s) 385, 704, 752, 761, 1315, 1342, 1369, 1414, 1757
BmrFI CCNGG 4 cut(s) 678, 765, 1319, 1512
BmsI GCATC 6 cut(s) 118, 465, 663, 714, 1297, 1624
BpmI CTGGAG 1 cut(s) 1595
Bpu10I CCTNAGC 2 cut(s) 465, 522
Bpu1102I GCTNAGC 2 cut(s) 270, 1070
BpuMI CCSGG 2 cut(s) 765, 1512
BsaBI GATNNNNATC 2 cut(s) 1287, 1683
BsaJI CCNNGG 5 cut(s) 637, 1417, 1511, 1525, 1558
BsaXI ACNNNNNCTCC 2 cut(s) 1069, 1099
Bsc4I CCNNNNNNNGG 7 cut(s) 394, 683, 734, 875, 1511, 1564, 1754
Bse1I ACTGG 2 cut(s) 289, 1083
Bse3DI GCAATG 3 cut(s) 1279, 1486, 1638
Bse8I GATNNNNATC 2 cut(s) 1287, 1683
BseBI CCWGG 2 cut(s) 678, 1319
BseDI CCNNGG 5 cut(s) 637, 1417, 1511, 1525, 1558
BseGI GGATG 4 cut(s) 652, 777, 885, 1521
BseJI GATNNNNATC 2 cut(s) 1287, 1683
BseLI CCNNNNNNNGG 7 cut(s) 394, 683, 734, 875, 1511, 1564, 1754
BseMI GCAATG 3 cut(s) 1279, 1486, 1638
BseMII CTCAG 4 cut(s) 55, 284, 368, 513
BseNI ACTGG 2 cut(s) 289, 1083
BseRI GAGGAG 5 cut(s) 255, 539, 542, 638, 641
BseXI GCAGC 6 cut(s) 424, 436, 451, 1615, 1618, 1666
BsgI GTGCAG 1 cut(s) 113
Bsh1236I CGCG 2 cut(s) 1419, 1705
BsiHKAI GWGCWC 2 cut(s) 42, 1082
BsiSI CCGG 2 cut(s) 764, 1511
BslI CCNNNNNNNGG 7 cut(s) 394, 683, 734, 875, 1511, 1564, 1754
BsmI GAATGC 2 cut(s) 790, 1576
Bsp1286I GDGCHC 2 cut(s) 42, 1082
Bsp143I GATC 1 cut(s) 166
Bsp1720I GCTNAGC 2 cut(s) 270, 1070
Bsp19I CCATGG 1 cut(s) 637
BspACI CCGC 8 cut(s) 795, 822, 1322, 1417, 1419, 1533, 1547, 1705
BspCNI CTCAG 4 cut(s) 54, 283, 367, 514
BspFNI CGCG 2 cut(s) 1419, 1705
BspHI TCATGA 2 cut(s) 18, 1173
BspMAI CTGCAG 1 cut(s) 1492
BspPI GGATC 1 cut(s) 161
BsrDI GCAATG 3 cut(s) 1279, 1486, 1638
BsrI ACTGG 2 cut(s) 289, 1083
BssECI CCNNGG 5 cut(s) 637, 1417, 1511, 1525, 1558
BssMI GATC 1 cut(s) 166
BssNAI GTATAC 1 cut(s) 114
BssT1I CCWWGG 2 cut(s) 637, 1558
Bst1107I GTATAC 1 cut(s) 114
Bst2UI CCWGG 2 cut(s) 678, 1319
Bst4CI ACNGT 2 cut(s) 59, 151
Bst6I CTCTTC 1 cut(s) 615
BstC8I GCNNGC 4 cut(s) 519, 1488, 1506, 1549
BstDEI CTNAG 6 cut(s) 41, 270, 354, 465, 522, 1070
BstDSI CCRYGG 3 cut(s) 637, 1417, 1525
BstENI CCTNNNNNAGG 1 cut(s) 873
BstF5I GGATG 4 cut(s) 652, 777, 885, 1521
BstFNI CGCG 2 cut(s) 1419, 1705
BstHHI GCGC 2 cut(s) 1510, 1705
BstKTI GATC 1 cut(s) 169
BstMBI GATC 1 cut(s) 166
BstNI CCWGG 2 cut(s) 678, 1319
BstNSI RCATGY 4 cut(s) 212, 304, 1147, 1732
BstSCI CCNGG 4 cut(s) 676, 763, 1317, 1510
BstSFI CTRYAG 1 cut(s) 1488
BstUI CGCG 2 cut(s) 1419, 1705
BstV1I GCAGC 6 cut(s) 424, 436, 451, 1615, 1618, 1666
BstX2I RGATCY 1 cut(s) 166
BstYI RGATCY 1 cut(s) 166
BstZ17I GTATAC 1 cut(s) 114
BtgI CCRYGG 3 cut(s) 637, 1417, 1525
BtgZI GCGATG 1 cut(s) 1803
BtsCI GGATG 4 cut(s) 652, 777, 885, 1521
BtsIMutI CAGTG 1 cut(s) 55
Cac8I GCNNGC 4 cut(s) 519, 1488, 1506, 1549
CciI TCATGA 2 cut(s) 18, 1173
CfoI GCGC 2 cut(s) 1510, 1705
Cfr13I GGNCC 9 cut(s) 385, 704, 752, 761, 1315, 1342, 1369, 1414, 1757
Cfr42I CCGCGG 1 cut(s) 1420
Csp6I GTAC 3 cut(s) 650, 1493, 1809
CspCI CAANNNNNGTGG 2 cut(s) 1246, 1281
CviQI GTAC 3 cut(s) 650, 1493, 1809
DdeI CTNAG 6 cut(s) 41, 270, 354, 465, 522, 1070
DpnI GATC 1 cut(s) 168
DpnII GATC 1 cut(s) 166
EaeI YGGCCR 2 cut(s) 640, 1706
Eam1104I CTCTTC 1 cut(s) 615
EarI CTCTTC 1 cut(s) 615
Eco130I CCWWGG 2 cut(s) 637, 1558
Eco147I AGGCCT 1 cut(s) 1390
Eco47I GGWCC 1 cut(s) 385
EcoNI CCTNNNNNAGG 1 cut(s) 873
EcoO109I RGGNCCY 1 cut(s) 704
EcoRII CCWGG 2 cut(s) 676, 1317
EcoT14I CCWWGG 2 cut(s) 637, 1558
ErhI CCWWGG 2 cut(s) 637, 1558
FauI CCCGC 2 cut(s) 1315, 1540
FauNDI CATATG 3 cut(s) 1311, 1338, 1719
FblI GTMKAC 1 cut(s) 113
Fnu4HI GCNGC 9 cut(s) 413, 425, 440, 796, 1417, 1604, 1607, 1655, 1706
FokI GGATG 4 cut(s) 639, 784, 892, 1528
Fsp4HI GCNGC 9 cut(s) 413, 425, 440, 796, 1417, 1604, 1607, 1655, 1706
FspBI CTAG 2 cut(s) 120, 1668
GlaI GCGC 2 cut(s) 1509, 1704
GluI GCNGC 9 cut(s) 413, 425, 440, 796, 1417, 1604, 1607, 1655, 1706
GsuI CTGGAG 1 cut(s) 1595
HapII CCGG 2 cut(s) 764, 1511
HhaI GCGC 2 cut(s) 1510, 1705
Hin6I GCGC 2 cut(s) 1508, 1703
HinP1I GCGC 2 cut(s) 1508, 1703
HindIII AAGCTT 1 cut(s) 188
HinfI GANTC 2 cut(s) 25, 313
HpaII CCGG 2 cut(s) 764, 1511
HphI GGTGA 9 cut(s) 481, 554, 676, 733, 787, 863, 968, 1151, 1436
Hpy166II GTNNAC 2 cut(s) 49, 114
Hpy188I TCNGA 6 cut(s) 30, 44, 357, 1329, 1440, 1473
Hpy188III TCNNGA 4 cut(s) 19, 184, 295, 1174
Hpy8I GTNNAC 2 cut(s) 49, 114
HpyCH4III ACNGT 2 cut(s) 59, 151
HpyCH4IV ACGT 1 cut(s) 162
HpyCH4V TGCA 8 cut(s) 94, 131, 212, 689, 874, 1288, 1490, 1574
HpyF3I CTNAG 6 cut(s) 41, 270, 354, 465, 522, 1070
HpySE526I ACGT 1 cut(s) 162
HspAI GCGC 2 cut(s) 1508, 1703
KspI CCGCGG 1 cut(s) 1420
Kzo9I GATC 1 cut(s) 166
LmnI GCTCC 4 cut(s) 487, 628, 1077, 1614
Lsp1109I GCAGC 6 cut(s) 424, 436, 451, 1615, 1618, 1666
LweI GCATC 6 cut(s) 118, 465, 663, 714, 1297, 1624
MaeI CTAG 2 cut(s) 120, 1668
MaeII ACGT 1 cut(s) 162
MaeIII GTNAC 5 cut(s) 145, 151, 341, 1139, 1445
MalI GATC 1 cut(s) 168
MboI GATC 1 cut(s) 166
MboII GAAGA 4 cut(s) 34, 581, 611, 632
MflI RGATCY 1 cut(s) 166
MhlI GDGCHC 2 cut(s) 42, 1082
MlsI TGGCCA 1 cut(s) 642
MluCI AATT 7 cut(s) 86, 99, 256, 417, 432, 1164, 1177
MluNI TGGCCA 1 cut(s) 642
Mox20I TGGCCA 1 cut(s) 642
MscI TGGCCA 1 cut(s) 642
MseI TTAA 4 cut(s) 81, 402, 510, 633
MslI CAYNNNNRTG 1 cut(s) 305
Msp20I TGGCCA 1 cut(s) 642
MspA1I CMGCKG 1 cut(s) 1419
MspI CCGG 2 cut(s) 764, 1511
MspR9I CCNGG 4 cut(s) 678, 765, 1319, 1512
Mva1269I GAATGC 2 cut(s) 790, 1576
MvaI CCWGG 2 cut(s) 678, 1319
MvnI CGCG 2 cut(s) 1419, 1705
NciI CCSGG 2 cut(s) 765, 1512
NcoI CCATGG 1 cut(s) 637
NdeI CATATG 3 cut(s) 1311, 1338, 1719
NdeII GATC 1 cut(s) 166
NmuCI GTSAC 3 cut(s) 145, 151, 1139
NspI RCATGY 4 cut(s) 212, 304, 1147, 1732
PagI TCATGA 2 cut(s) 18, 1173
PceI AGGCCT 1 cut(s) 1390
PciI ACATGT 2 cut(s) 300, 1143
PctI GAATGC 2 cut(s) 790, 1576
PfeI GAWTC 2 cut(s) 25, 313
PflMI CCANNNNNTGG 1 cut(s) 1564
PkrI GCNGC 9 cut(s) 414, 426, 441, 797, 1418, 1605, 1608, 1656, 1707
PscI ACATGT 2 cut(s) 300, 1143
PshBI ATTAAT 1 cut(s) 402
Psp6I CCWGG 2 cut(s) 676, 1317
PspGI CCWGG 2 cut(s) 676, 1317
PspPI GGNCC 9 cut(s) 385, 704, 752, 761, 1315, 1342, 1369, 1414, 1757
PstI CTGCAG 1 cut(s) 1492
PsuI RGATCY 1 cut(s) 166
RsaI GTAC 3 cut(s) 651, 1494, 1810
RsaNI GTAC 3 cut(s) 650, 1493, 1809
RseI CAYNNNNRTG 1 cut(s) 305
SacII CCGCGG 1 cut(s) 1420
SaqAI TTAA 4 cut(s) 81, 402, 510, 633
SatI GCNGC 9 cut(s) 413, 425, 440, 796, 1417, 1604, 1607, 1655, 1706
Sau3AI GATC 1 cut(s) 166
Sau96I GGNCC 9 cut(s) 385, 704, 752, 761, 1315, 1342, 1369, 1414, 1757
ScrFI CCNGG 4 cut(s) 678, 765, 1319, 1512
SduI GDGCHC 2 cut(s) 42, 1082
SfaNI GCATC 6 cut(s) 118, 465, 663, 714, 1297, 1624
SfcI CTRYAG 1 cut(s) 1488
SfiI GGCCNNNNNGGCC 1 cut(s) 760
Sfr303I CCGCGG 1 cut(s) 1420
SgrBI CCGCGG 1 cut(s) 1420
SinI GGWCC 1 cut(s) 385
SmiMI CAYNNNNRTG 1 cut(s) 305
SpeI ACTAGT 1 cut(s) 119
Sse9I AATT 7 cut(s) 86, 99, 256, 417, 432, 1164, 1177
SseBI AGGCCT 1 cut(s) 1390
SsiI CCGC 8 cut(s) 795, 822, 1322, 1417, 1419, 1533, 1547, 1705
SspMI CTAG 2 cut(s) 120, 1668
StuI AGGCCT 1 cut(s) 1390
StyD4I CCNGG 4 cut(s) 676, 763, 1317, 1510
StyI CCWWGG 2 cut(s) 637, 1558
TaaI ACNGT 2 cut(s) 59, 151
TaiI ACGT 1 cut(s) 165
TasI AATT 7 cut(s) 86, 99, 256, 417, 432, 1164, 1177
TatI WGTACW 1 cut(s) 1492
TauI GCSGC 3 cut(s) 798, 1419, 1708
TfiI GAWTC 2 cut(s) 25, 313
Tru1I TTAA 4 cut(s) 81, 402, 510, 633
Tru9I TTAA 4 cut(s) 81, 402, 510, 633
TscAI CASTG 1 cut(s) 62
TseFI GTSAC 3 cut(s) 145, 151, 1139
TseI GCWGC 6 cut(s) 412, 424, 439, 1603, 1606, 1654
Tsp45I GTSAC 3 cut(s) 145, 151, 1139
TspRI CASTG 1 cut(s) 62
Van91I CCANNNNNTGG 1 cut(s) 1564
VpaK11BI GGWCC 1 cut(s) 385
VspI ATTAAT 1 cut(s) 402
XagI CCTNNNNNAGG 1 cut(s) 873
XapI RAATTY 2 cut(s) 417, 432
XceI RCATGY 4 cut(s) 212, 304, 1147, 1732
XcmI CCANNNNNNNNNTGG 1 cut(s) 1667
XmiI GTMKAC 1 cut(s) 113
XspI CTAG 2 cut(s) 120, 1668
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.