Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007986

Physical Location & Seq

Genomic Coordinates Forward (+)

4395640 .. 4398472

Gene Structure 2833 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ42128

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1773 bp

ATGAATAAGCAAGACTTCATGAAGATTCAGAGCTGTGTTCTCAGAGTGAACATTCACTGTGACGGTTGTAAGCAGAAAGTTAAGAAATTGGTGCAGAAAATTGATGGTGTGTTTACTACTAGTATAGATGCAGAGCAAGGCAAAGTGACTGTCACAGGAAACGTAGATCCAGCCACAATCATCAAGAAGCTTGAAAAGTCAGGCAAACATGCAGAGCTTTGGGGAGGAGGAGGAGGACAGAAGGGTAATTCCCAAGCCCAGCAGTTCAACCCCAACCAGTTCAAGAACATGTCAATGGAGAATCATGGCAAAGGGGGAAAAGACAATGGTAGTAACAAGGCTCAGAAGAGTGGTGGTGGTGGAAACCAACAGAAGGGCAATAATGTCCAGCAACAAATTCAGCAGCAACAGCAGATGATGAAAGGGGCTAAGGTGATGATGCCAACGAAGGAGCAGAACAAGTCTGTTAAGTTCACTTTGCCTGCTGAGGAGGAGTTCAGTGATGGTGAGTTTGATGATGAGTTTGATGATGATGATTATGATGATGAGGAGTTTGATGATGAGGATTATGAAGATGATGAGGAAGAAGGGCTTAACCATGGTCATGGCCATGGCCATGGACATCAGTTACCACCCAACAAGATGATGATGATGCCTGGTATGGGTGTAAATGGGCCACAAGGGCCTTATGGGAAGATGATGCCTGTGATGGGTAATAATGGACATGGGCCACACGGGCCGGGTGGGATGGTCAATATGAATGCTATGGGCGGCAAGAAGTTAGGTGGTGGAGGCGGTGGTGGTGGGGGAGGAGGGTCTGTCAAGAAAGGTGAGGTTATTGATTTCCCTATGCAAGGGATGAAGGGTATGGGTGGAAATAAGGAAAAGAAGGATGGCAAGGGAGGAAAGAAAGGGGGAGGTGATGATGAGAAGGGCAAGAGCAAGAAAAAGAGCAAGGGGGGTAAAGATGGTAAAGGAGGTAAAGACAAAAGTGAGGGTAAAAAGGGTGGGTTGCTTGGGTGGCTTAGCAGAAGCACCAGTAAAAAAGAGAGTGATGGAAACCACAAGGGGGGCAAGGGAGGTAAAAAAGGTGGTGACAAGTATGATGATTTCATGGAAATTGATGTCATGAATCATAAGAAAGGAGGCAAAGAAGGTAAAGAAAGCAACAAGGAAAGCAAAGGAAGCAAAGAAGGCAAAGGAAGCAAAGGAGGCAAAGGTGGTGGTGGCAATGGCGGAGATGTTCATCAAATGGGTCAAAAGGGCCAGGCAGGTCAGATGGGTCATATGGGCCAAATGGGCAATATGGGTCAGATGGGCCATATGGGGCAGATGAGGCCAATGGGCCAAATGGGGCGTGGAGGTCAGAATATGGGCCAGATGGGTAACTACCCAATGGGCAGTATGGGTCAGATGGGCAATGTGCCTGCAGTACAAGGACTACCTGCACCGGGGATGATGAACGGTGGCGGTGGCGGTGGCTATTATCAAGGGATGGGAAATGCCGGAAATCCCTATACTCAACAGCAGCTCCAGCAACTCCAGCAACAGCAACAACAGCTCCAGCAGCAGCAATATATGGCTATGATGATGAACCAGCAACAGCAGCAGCAAAGGGCTAATGCGAATGACATGTACCAACCCATGATGTATGCGCGGCCACAGCCACCGATGAACTACATGCCCCATCAGCCAATGCCTTCAGCAGCGCCATCTGAGCCTTACACTAACTTCTTCAGTGATGAGAATGCCAACAGTTGCAGCGTCATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0009506 GO:0009987 GO:0019725 GO:0030001 GO:0030003 GO:0030054 GO:0042592 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055044 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

590

Amino Acids

62.86

Weight (kDa)

8.99

Isoelectric Point (pI)

44.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMA	PF00403	14 - 70	8.8e-15	Heavy-metal-associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007986)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05220 AT3G05220
fragaria_vesca	FvH4_6g05480 FvH4_6g05480 FvH4_6g05480 FvH4_6g05480
malus_domestica	MD04G1208200.v1.1 MD12G1222200.v1.1
prunus_persica	Prupe.6G329100_v2.0.a1 Prupe.6G329100_v2.0.a1
pyrus_communis	pycom04g18420 pycom12g20840
rosa_chinensis	RchiOBHm_Chr3g0454261
rosa_laevigata	RLG00000025471
rosa_multiflora	Rmu_sc0005231.1_g000005
rosa_roxburghii	Rroxscaffold_165G00437040 Rroxscaffold_6G00425300
rosa_rugosa	Rorug02G0653600
rosa_samantha	Rh3AG057200 Rh3BG058700 Rh3CG057900 Rh3DG059200
rosa_wichuraiana	Rw0G001730 Rw3G004400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	1262, 1453
AccII	CGCG	1 cut(s)	1657
AciI	CCGC	6 cut(s)	771, 795, 1236, 1470, 1476, 1657
AclWI	GGATC	1 cut(s)	161
AcoI	YGGCCR	3 cut(s)	607, 613, 1658
AcsI	RAATTY	1 cut(s)	396
AcuI	CTGAAG	2 cut(s)	1686, 1720
AfaI	GTAC	2 cut(s)	1434, 1637
AfiI	CCNNNNNNNGG	6 cut(s)	373, 662, 710, 854, 1069, 1451
AflIII	ACRYGT	2 cut(s)	288, 1632
AgsI	TTSAA	3 cut(s)	194, 268, 283
AhlI	ACTAGT	1 cut(s)	119
AjnI	CCWGG	2 cut(s)	655, 1266
AluBI	AGCT	5 cut(s)	33, 190, 217, 1531, 1561
AluI	AGCT	5 cut(s)	33, 190, 217, 1531, 1561
AlwI	GGATC	1 cut(s)	161
ApeKI	GCWGC	8 cut(s)	403, 1528, 1567, 1570, 1606, 1609, 1706, 1761
ApoI	RAATTY	1 cut(s)	396
ArsI	GACNNNNNNTTYG	2 cut(s)	135, 167
AspLEI	GCGC	2 cut(s)	1657, 1711
AspS9I	GGNCC	9 cut(s)	674, 683, 728, 737, 1264, 1291, 1318, 1345, 1375
AsuC2I	CCSGG	2 cut(s)	741, 1452
AsuHPI	GGTGA	5 cut(s)	445, 518, 842, 932, 1106
BalI	TGGCCA	2 cut(s)	609, 615
BbvCI	CCTCAGC	1 cut(s)	486
BbvI	GCAGC	7 cut(s)	415, 1540, 1579, 1582, 1618, 1621, 1718
BciT130I	CCWGG	2 cut(s)	657, 1268
BcnI	CCSGG	2 cut(s)	741, 1452
BcuI	ACTAGT	1 cut(s)	119
BfaI	CTAG	1 cut(s)	120
BfmI	CTRYAG	1 cut(s)	1428
BfoI	RGCGCY	1 cut(s)	1712
BfuAI	ACCTGC	2 cut(s)	1262, 1453
BglI	GCCNNNNNGGC	3 cut(s)	682, 736, 1299
BlpI	GCTNAGC	1 cut(s)	1025
Bme1390I	CCNGG	4 cut(s)	657, 741, 1268, 1452
BmgT120I	GGNCC	9 cut(s)	674, 683, 728, 737, 1264, 1291, 1318, 1345, 1375
BmrFI	CCNGG	4 cut(s)	657, 741, 1268, 1452
BmsI	GCATC	4 cut(s)	118, 429, 642, 690
BpmI	CTGGAG	3 cut(s)	1517, 1526, 1547
Bpu10I	CCTNAGC	2 cut(s)	429, 486
Bpu1102I	GCTNAGC	1 cut(s)	1025
BpuMI	CCSGG	2 cut(s)	741, 1452
BsaBI	GATNNNNATC	1 cut(s)	1245
BsaJI	CCNNGG	4 cut(s)	598, 610, 616, 1451
BsaXI	ACNNNNNCTCC	6 cut(s)	804, 834, 1515, 1545, 1545, 1575
Bsc4I	CCNNNNNNNGG	6 cut(s)	373, 662, 710, 854, 1069, 1451
Bse1I	ACTGG	2 cut(s)	277, 1038
Bse3DI	GCAATG	2 cut(s)	1237, 1426
Bse8I	GATNNNNATC	1 cut(s)	1245
BseBI	CCWGG	2 cut(s)	657, 1268
BseDI	CCNNGG	4 cut(s)	598, 610, 616, 1451
BseGI	GGATG	5 cut(s)	753, 864, 898, 1461, 1500
BseJI	GATNNNNATC	1 cut(s)	1245
BseLI	CCNNNNNNNGG	6 cut(s)	373, 662, 710, 854, 1069, 1451
BseMI	GCAATG	2 cut(s)	1237, 1426
BseMII	CTCAG	4 cut(s)	55, 356, 477, 1707
BseNI	ACTGG	2 cut(s)	277, 1038
BseRI	GAGGAG	7 cut(s)	240, 243, 246, 503, 506, 563, 825
BseXI	GCAGC	7 cut(s)	415, 1540, 1579, 1582, 1618, 1621, 1718
BseYI	CCCAGC	1 cut(s)	258
BsgI	GTGCAG	2 cut(s)	113, 1431
Bsh1236I	CGCG	1 cut(s)	1657
BsiSI	CCGG	3 cut(s)	740, 1451, 1506
BslI	CCNNNNNNNGG	6 cut(s)	373, 662, 710, 854, 1069, 1451
BsmI	GAATGC	2 cut(s)	766, 1753
Bsp143I	GATC	1 cut(s)	166
Bsp1720I	GCTNAGC	1 cut(s)	1025
Bsp19I	CCATGG	3 cut(s)	598, 610, 616
BspACI	CCGC	6 cut(s)	771, 795, 1236, 1470, 1476, 1657
BspCNI	CTCAG	4 cut(s)	54, 355, 478, 1708
BspFNI	CGCG	1 cut(s)	1657
BspHI	TCATGA	2 cut(s)	18, 1128
BspMAI	CTGCAG	1 cut(s)	1432
BspMI	ACCTGC	2 cut(s)	1262, 1453
BspPI	GGATC	1 cut(s)	161
BsrDI	GCAATG	2 cut(s)	1237, 1426
BsrI	ACTGG	2 cut(s)	277, 1038
BssECI	CCNNGG	4 cut(s)	598, 610, 616, 1451
BssMI	GATC	1 cut(s)	166
BssT1I	CCWWGG	3 cut(s)	598, 610, 616
Bst2UI	CCWGG	2 cut(s)	657, 1268
Bst4CI	ACNGT	5 cut(s)	59, 65, 151, 1466, 1757
Bst6I	CTCTTC	1 cut(s)	341
BstC8I	GCNNGC	2 cut(s)	483, 1428
BstDEI	CTNAG	6 cut(s)	41, 342, 429, 486, 1025, 1716
BstDSI	CCRYGG	3 cut(s)	598, 610, 616
BstENI	CCTNNNNNAGG	1 cut(s)	852
BstF5I	GGATG	5 cut(s)	753, 864, 898, 1461, 1500
BstFNI	CGCG	1 cut(s)	1657
BstH2I	RGCGCY	1 cut(s)	1712
BstHHI	GCGC	2 cut(s)	1657, 1711
BstKTI	GATC	1 cut(s)	169
BstMBI	GATC	1 cut(s)	166
BstNI	CCWGG	2 cut(s)	657, 1268
BstNSI	RCATGY	4 cut(s)	212, 292, 1636, 1684
BstSCI	CCNGG	4 cut(s)	655, 739, 1266, 1450
BstSFI	CTRYAG	1 cut(s)	1428
BstUI	CGCG	1 cut(s)	1657
BstV1I	GCAGC	7 cut(s)	415, 1540, 1579, 1582, 1618, 1621, 1718
BstX2I	RGATCY	1 cut(s)	166
BstXI	CCANNNNNNTGG	2 cut(s)	605, 617
BstYI	RGATCY	1 cut(s)	166
BtgI	CCRYGG	3 cut(s)	598, 610, 616
BtsCI	GGATG	5 cut(s)	753, 864, 898, 1461, 1500
BtsIMutI	CAGTG	3 cut(s)	55, 505, 1744
BveI	ACCTGC	2 cut(s)	1262, 1453
Cac8I	GCNNGC	2 cut(s)	483, 1428
CciI	TCATGA	2 cut(s)	18, 1128
CfoI	GCGC	2 cut(s)	1657, 1711
Cfr13I	GGNCC	9 cut(s)	674, 683, 728, 737, 1264, 1291, 1318, 1345, 1375
CseI	GACGC	1 cut(s)	1753
Csp6I	GTAC	2 cut(s)	1433, 1636
CspCI	CAANNNNNGTGG	2 cut(s)	1204, 1239
CviQI	GTAC	2 cut(s)	1433, 1636
DdeI	CTNAG	6 cut(s)	41, 342, 429, 486, 1025, 1716
DpnI	GATC	1 cut(s)	168
DpnII	GATC	1 cut(s)	166
EaeI	YGGCCR	3 cut(s)	607, 613, 1658
Eam1104I	CTCTTC	1 cut(s)	341
EarI	CTCTTC	1 cut(s)	341
EciI	GGCGGA	1 cut(s)	1251
Eco130I	CCWWGG	3 cut(s)	598, 610, 616
Eco57I	CTGAAG	2 cut(s)	1686, 1720
EcoNI	CCTNNNNNAGG	1 cut(s)	852
EcoO109I	RGGNCCY	1 cut(s)	683
EcoRII	CCWGG	2 cut(s)	655, 1266
EcoT14I	CCWWGG	3 cut(s)	598, 610, 616
ErhI	CCWWGG	3 cut(s)	598, 610, 616
FalI	AAGNNNNNCTT	3 cut(s)	31, 576, 608
FauNDI	CATATG	2 cut(s)	1287, 1323
FokI	GGATG	5 cut(s)	760, 871, 905, 1468, 1507
FspBI	CTAG	1 cut(s)	120
GlaI	GCGC	2 cut(s)	1656, 1710
GsaI	CCCAGC	1 cut(s)	262
GsuI	CTGGAG	3 cut(s)	1517, 1526, 1547
HaeII	RGCGCY	1 cut(s)	1712
HapII	CCGG	3 cut(s)	740, 1451, 1506
HgaI	GACGC	1 cut(s)	1753
HhaI	GCGC	2 cut(s)	1657, 1711
Hin6I	GCGC	2 cut(s)	1655, 1709
HinP1I	GCGC	2 cut(s)	1655, 1709
HindIII	AAGCTT	1 cut(s)	188
HinfI	GANTC	3 cut(s)	25, 301, 1132
HpaII	CCGG	3 cut(s)	740, 1451, 1506
HphI	GGTGA	5 cut(s)	445, 518, 842, 932, 1106
Hpy166II	GTNNAC	3 cut(s)	49, 114, 474
Hpy188I	TCNGA	8 cut(s)	30, 44, 345, 1278, 1314, 1368, 1413, 1717
Hpy188III	TCNNGA	5 cut(s)	19, 184, 283, 823, 1129
Hpy8I	GTNNAC	3 cut(s)	49, 114, 474
HpyCH4III	ACNGT	5 cut(s)	59, 65, 151, 1466, 1757
HpyCH4IV	ACGT	1 cut(s)	162
HpyCH4V	TGCA	7 cut(s)	94, 131, 212, 853, 1430, 1448, 1761
HpyF3I	CTNAG	6 cut(s)	41, 342, 429, 486, 1025, 1716
HpySE526I	ACGT	1 cut(s)	162
HspAI	GCGC	2 cut(s)	1655, 1709
Kzo9I	GATC	1 cut(s)	166
LmnI	GCTCC	3 cut(s)	451, 1536, 1566
Lsp1109I	GCAGC	7 cut(s)	415, 1540, 1579, 1582, 1618, 1621, 1718
LweI	GCATC	4 cut(s)	118, 429, 642, 690
MaeI	CTAG	1 cut(s)	120
MaeII	ACGT	1 cut(s)	162
MaeIII	GTNAC	7 cut(s)	59, 145, 151, 332, 627, 1094, 1385
MalI	GATC	1 cut(s)	168
MboI	GATC	1 cut(s)	166
MboII	GAAGA	6 cut(s)	34, 358, 584, 596, 706, 1726
MflI	RGATCY	1 cut(s)	166
MlsI	TGGCCA	2 cut(s)	609, 615
MluCI	AATT	5 cut(s)	86, 99, 247, 396, 1119
MluNI	TGGCCA	2 cut(s)	609, 615
Mox20I	TGGCCA	2 cut(s)	609, 615
MscI	TGGCCA	2 cut(s)	609, 615
MseI	TTAA	3 cut(s)	81, 468, 594
MslI	CAYNNNNRTG	4 cut(s)	293, 603, 609, 615
Msp20I	TGGCCA	2 cut(s)	609, 615
MspI	CCGG	3 cut(s)	740, 1451, 1506
MspR9I	CCNGG	4 cut(s)	657, 741, 1268, 1452
Mva1269I	GAATGC	2 cut(s)	766, 1753
MvaI	CCWGG	2 cut(s)	657, 1268
MvnI	CGCG	1 cut(s)	1657
NciI	CCSGG	2 cut(s)	741, 1452
NcoI	CCATGG	3 cut(s)	598, 610, 616
NdeI	CATATG	2 cut(s)	1287, 1323
NdeII	GATC	1 cut(s)	166
NmuCI	GTSAC	4 cut(s)	59, 145, 151, 1094
NspI	RCATGY	4 cut(s)	212, 292, 1636, 1684
PagI	TCATGA	2 cut(s)	18, 1128
PciI	ACATGT	2 cut(s)	288, 1632
PctI	GAATGC	2 cut(s)	766, 1753
PfeI	GAWTC	3 cut(s)	25, 301, 1132
PscI	ACATGT	2 cut(s)	288, 1632
Psp6I	CCWGG	2 cut(s)	655, 1266
PspFI	CCCAGC	1 cut(s)	258
PspGI	CCWGG	2 cut(s)	655, 1266
PspPI	GGNCC	9 cut(s)	674, 683, 728, 737, 1264, 1291, 1318, 1345, 1375
PstI	CTGCAG	1 cut(s)	1432
PsuI	RGATCY	1 cut(s)	166
RsaI	GTAC	2 cut(s)	1434, 1637
RsaNI	GTAC	2 cut(s)	1433, 1636
RseI	CAYNNNNRTG	4 cut(s)	293, 603, 609, 615
SaqAI	TTAA	3 cut(s)	81, 468, 594
Sau3AI	GATC	1 cut(s)	166
Sau96I	GGNCC	9 cut(s)	674, 683, 728, 737, 1264, 1291, 1318, 1345, 1375
ScrFI	CCNGG	4 cut(s)	657, 741, 1268, 1452
SfaNI	GCATC	4 cut(s)	118, 429, 642, 690
SfcI	CTRYAG	1 cut(s)	1428
SfiI	GGCCNNNNNGGCC	2 cut(s)	682, 736
SmiMI	CAYNNNNRTG	4 cut(s)	293, 603, 609, 615
SpeI	ACTAGT	1 cut(s)	119
Sse9I	AATT	5 cut(s)	86, 99, 247, 396, 1119
SsiI	CCGC	6 cut(s)	771, 795, 1236, 1470, 1476, 1657
SspMI	CTAG	1 cut(s)	120
StyD4I	CCNGG	4 cut(s)	655, 739, 1266, 1450
StyI	CCWWGG	3 cut(s)	598, 610, 616
TaaI	ACNGT	5 cut(s)	59, 65, 151, 1466, 1757
TaiI	ACGT	1 cut(s)	165
TasI	AATT	5 cut(s)	86, 99, 247, 396, 1119
TatI	WGTACW	1 cut(s)	1432
TauI	GCSGC	2 cut(s)	774, 1660
TfiI	GAWTC	3 cut(s)	25, 301, 1132
Tru1I	TTAA	3 cut(s)	81, 468, 594
Tru9I	TTAA	3 cut(s)	81, 468, 594
TscAI	CASTG	3 cut(s)	62, 505, 1744
TseFI	GTSAC	4 cut(s)	59, 145, 151, 1094
TseI	GCWGC	8 cut(s)	403, 1528, 1567, 1570, 1606, 1609, 1706, 1761
Tsp45I	GTSAC	4 cut(s)	59, 145, 151, 1094
TspRI	CASTG	3 cut(s)	62, 505, 1744
XagI	CCTNNNNNAGG	1 cut(s)	852
XapI	RAATTY	1 cut(s)	396
XceI	RCATGY	4 cut(s)	212, 292, 1636, 1684
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1355
XspI	CTAG	1 cut(s)	120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.