Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0007986

Physical Location & Seq

Genomic Coordinates Forward (+)

4003750 .. 4006666

Gene Structure 2917 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG057900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1491 bp

ATGTCAATGGAGAATCATGGCAAAGGGGGAAAAGACAATGGTAGTAACAAGGCTCAGAAGAGTGGTGGTGGTGGTGGAAACCAACAGAAGGGCAATAATGTCCAGCAACAAATTCAGCAGCAACAGCAGATGATGAAAGGGGCTAAGGTGATGATGCCAACGAAGGAGCAGAACAAGTCTGTTAAGTTCACTTTGCCTGCTGAGGAGGAGTTCAGTGATGGTGAGTTTGATGATGAGTTTGATGATGATGATTATGATGATGATGAGTTTGATGATGAGGATTATGAAGATGATGAGGAAGAAGGGCTTAACCATGGTCATGGCCATGGCCATGGACATCAGTTACCACCCAACAAGATGATGATGATGCCTGGTATGGGTGCAAATGGGCCACAAGGGCCTTATGGGAAGATGATGCCTGTGATGGGTAATAATGGACATGGGCCACACGGGCCGGGTGGGATGGTCAATATGAATGCTATGGGCGGCAAGAAGTTAGGTGGTGGAGGTGGAGGTGGAGGTGGTGGTGGTGGGGGAGGAGGGTCTGTCAAGAAAGGTGAGGTTATTGATTTCCCTATGCAAGGGATGAAGGGTATGGGTGGAAATAAGGAAAAGAAGGATGGCAAGGGAGGAAAGAAAGGGGGAGGTGATGATGAGAAGGGCAAGAGCAAGAAAAAGAGCAAGGGGGGTAAAGATGGTAAAGGAGGTAAAGACAAAAGTGAGGGTAAAAAGGGTGGGTTGCTTGGGTGGCTTAGCAGAAGCACCAGTAAAAAAGAGAGTGATGGAAACCACAAGGGGGGCAAGGGAGGTAAAAAAGGTGGTGACAAGTATGATGATTTCATGGAAATTGATGTCATGAATCATAAGAAAGGAGGCAAAGAAGGTAAAGAAAGCAACAAGGAAAGCAAAGGAAGCAAAGAAGGCAAAGGAAGCAAAGGAGGCAAAGGTGGTGGTGGCAATGGTGGAGATGTTCATCAAATGGGTCAAAAGGGCCAGGCAGGTCAGATGGGGCATATGGGCCAAATGGGTCAGATGGGCCATATGGGGCAGATGAGGCCAATGGGCCAAATGGGGCGTGGAGGTCAGAATATGGGCCAGATGGGTAACTACCCAATGGGCAGTATGGGTCAGATGGGCAATGTGCCTGCAGTACAAGGACTACCTGCACCAGGGATGATGAACGGTGGTGGTGGCGGTGGCTATTATCAAGGGATGGGAAATGCCGGAAATCCCTATACTCAACAGCAGCTCCAGCAACTCCAGCAACAGCAACAACAGCTCCAGCAGCAGCAATATATGGCTATGATGATAAACCAGCAACAGCAGCAGCAAAGGGCTAATGGGAATGACATGTACCAACCCATGATGTATGCGCGGCCACAGCCACCGATGAACTACATGCCCCATCAGCCAATGCCTTCAGCAGCGCCATCTGAGCCTTACACTAACTTCTTCAGTGATGAGAATGCCAACAGTTGCAGCGTCATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0009506 GO:0009987 GO:0019725 GO:0030001 GO:0030003 GO:0030054 GO:0042592 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055044 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

496

Amino Acids

52.27

Weight (kDa)

8.46

Isoelectric Point (pI)

47.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007986)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05220 AT3G05220
fragaria_vesca	FvH4_6g05480 FvH4_6g05480 FvH4_6g05480 FvH4_6g05480
malus_domestica	MD04G1208200.v1.1 MD12G1222200.v1.1
prunus_persica	Prupe.6G329100_v2.0.a1 Prupe.6G329100_v2.0.a1
pyrus_communis	pycom04g18420 pycom12g20840
rosa_chinensis	RchiOBHm_Chr3g0454261
rosa_laevigata	RLG00000025471
rosa_multiflora	Rmu_sc0005231.1_g000005
rosa_roxburghii	Rroxscaffold_165G00437040 Rroxscaffold_6G00425300
rosa_rugosa	Rorug02G0653600
rosa_samantha	Rh3AG057200 Rh3BG058700 Rh3CG057900 Rh3DG059200
rosa_wichuraiana	Rw0G001730 Rw3G004400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	989, 1171
AccII	CGCG	1 cut(s)	1375
AciI	CCGC	3 cut(s)	486, 1194, 1375
AcoI	YGGCCR	3 cut(s)	322, 328, 1376
AcsI	RAATTY	1 cut(s)	111
AcuI	CTGAAG	2 cut(s)	1404, 1438
AfaI	GTAC	2 cut(s)	1152, 1355
AfiI	CCNNNNNNNGG	6 cut(s)	88, 377, 425, 581, 796, 1169
AflIII	ACRYGT	1 cut(s)	1350
AjnI	CCWGG	3 cut(s)	370, 993, 1168
AluBI	AGCT	2 cut(s)	1249, 1279
AluI	AGCT	2 cut(s)	1249, 1279
ApeKI	GCWGC	8 cut(s)	118, 1246, 1285, 1288, 1324, 1327, 1424, 1479
ApoI	RAATTY	1 cut(s)	111
AspLEI	GCGC	2 cut(s)	1375, 1429
AspS9I	GGNCC	9 cut(s)	389, 398, 443, 452, 991, 1018, 1036, 1063, 1093
AsuC2I	CCSGG	1 cut(s)	456
AsuHPI	GGTGA	5 cut(s)	160, 233, 569, 659, 833
BalI	TGGCCA	2 cut(s)	324, 330
BbvCI	CCTCAGC	1 cut(s)	201
BbvI	GCAGC	7 cut(s)	130, 1258, 1297, 1300, 1336, 1339, 1436
BciT130I	CCWGG	3 cut(s)	372, 995, 1170
BcnI	CCSGG	1 cut(s)	456
BfmI	CTRYAG	1 cut(s)	1146
BfoI	RGCGCY	1 cut(s)	1430
BfuAI	ACCTGC	2 cut(s)	989, 1171
BglI	GCCNNNNNGGC	2 cut(s)	397, 451
BlpI	GCTNAGC	1 cut(s)	752
Bme1390I	CCNGG	4 cut(s)	372, 456, 995, 1170
BmgT120I	GGNCC	9 cut(s)	389, 398, 443, 452, 991, 1018, 1036, 1063, 1093
BmrFI	CCNGG	4 cut(s)	372, 456, 995, 1170
BmsI	GCATC	3 cut(s)	144, 357, 405
BpmI	CTGGAG	3 cut(s)	1235, 1244, 1265
Bpu10I	CCTNAGC	2 cut(s)	144, 201
Bpu1102I	GCTNAGC	1 cut(s)	752
BpuMI	CCSGG	1 cut(s)	456
BsaBI	GATNNNNATC	1 cut(s)	972
BsaJI	CCNNGG	4 cut(s)	313, 325, 331, 1169
BsaXI	ACNNNNNCTCC	6 cut(s)	531, 561, 1233, 1263, 1263, 1293
Bsc4I	CCNNNNNNNGG	6 cut(s)	88, 377, 425, 581, 796, 1169
Bse1I	ACTGG	1 cut(s)	765
Bse3DI	GCAATG	2 cut(s)	964, 1144
Bse8I	GATNNNNATC	1 cut(s)	972
BseBI	CCWGG	3 cut(s)	372, 995, 1170
BseDI	CCNNGG	4 cut(s)	313, 325, 331, 1169
BseGI	GGATG	5 cut(s)	468, 591, 625, 1179, 1218
BseJI	GATNNNNATC	1 cut(s)	972
BseLI	CCNNNNNNNGG	6 cut(s)	88, 377, 425, 581, 796, 1169
BseMI	GCAATG	2 cut(s)	964, 1144
BseMII	CTCAG	3 cut(s)	68, 192, 1425
BseNI	ACTGG	1 cut(s)	765
BseRI	GAGGAG	3 cut(s)	218, 221, 552
BseXI	GCAGC	7 cut(s)	130, 1258, 1297, 1300, 1336, 1339, 1436
BsgI	GTGCAG	1 cut(s)	1149
Bsh1236I	CGCG	1 cut(s)	1375
BsiSI	CCGG	2 cut(s)	455, 1224
BslI	CCNNNNNNNGG	6 cut(s)	88, 377, 425, 581, 796, 1169
BsmI	GAATGC	2 cut(s)	481, 1471
Bsp1720I	GCTNAGC	1 cut(s)	752
Bsp19I	CCATGG	3 cut(s)	313, 325, 331
BspACI	CCGC	3 cut(s)	486, 1194, 1375
BspCNI	CTCAG	3 cut(s)	67, 193, 1426
BspFNI	CGCG	1 cut(s)	1375
BspHI	TCATGA	1 cut(s)	855
BspMAI	CTGCAG	1 cut(s)	1150
BspMI	ACCTGC	2 cut(s)	989, 1171
BsrDI	GCAATG	2 cut(s)	964, 1144
BsrI	ACTGG	1 cut(s)	765
BssECI	CCNNGG	4 cut(s)	313, 325, 331, 1169
BssT1I	CCWWGG	3 cut(s)	313, 325, 331
Bst2UI	CCWGG	3 cut(s)	372, 995, 1170
Bst4CI	ACNGT	2 cut(s)	1184, 1475
Bst6I	CTCTTC	1 cut(s)	53
BstC8I	GCNNGC	2 cut(s)	198, 1146
BstDEI	CTNAG	5 cut(s)	54, 144, 201, 752, 1434
BstDSI	CCRYGG	3 cut(s)	313, 325, 331
BstENI	CCTNNNNNAGG	2 cut(s)	579, 1167
BstF5I	GGATG	5 cut(s)	468, 591, 625, 1179, 1218
BstFNI	CGCG	1 cut(s)	1375
BstH2I	RGCGCY	1 cut(s)	1430
BstHHI	GCGC	2 cut(s)	1375, 1429
BstNI	CCWGG	3 cut(s)	372, 995, 1170
BstNSI	RCATGY	2 cut(s)	1354, 1402
BstSCI	CCNGG	4 cut(s)	370, 454, 993, 1168
BstSFI	CTRYAG	1 cut(s)	1146
BstUI	CGCG	1 cut(s)	1375
BstV1I	GCAGC	7 cut(s)	130, 1258, 1297, 1300, 1336, 1339, 1436
BstXI	CCANNNNNNTGG	2 cut(s)	320, 332
BtgI	CCRYGG	3 cut(s)	313, 325, 331
BtsCI	GGATG	5 cut(s)	468, 591, 625, 1179, 1218
BtsIMutI	CAGTG	2 cut(s)	220, 1462
BveI	ACCTGC	2 cut(s)	989, 1171
Cac8I	GCNNGC	2 cut(s)	198, 1146
CciI	TCATGA	1 cut(s)	855
CfoI	GCGC	2 cut(s)	1375, 1429
Cfr13I	GGNCC	9 cut(s)	389, 398, 443, 452, 991, 1018, 1036, 1063, 1093
CseI	GACGC	1 cut(s)	1471
Csp6I	GTAC	2 cut(s)	1151, 1354
CspCI	CAANNNNNGTGG	2 cut(s)	931, 966
CviQI	GTAC	2 cut(s)	1151, 1354
DdeI	CTNAG	5 cut(s)	54, 144, 201, 752, 1434
EaeI	YGGCCR	3 cut(s)	322, 328, 1376
Eam1104I	CTCTTC	1 cut(s)	53
EarI	CTCTTC	1 cut(s)	53
Eco130I	CCWWGG	3 cut(s)	313, 325, 331
Eco57I	CTGAAG	2 cut(s)	1404, 1438
EcoNI	CCTNNNNNAGG	2 cut(s)	579, 1167
EcoO109I	RGGNCCY	1 cut(s)	398
EcoRII	CCWGG	3 cut(s)	370, 993, 1168
EcoT14I	CCWWGG	3 cut(s)	313, 325, 331
ErhI	CCWWGG	3 cut(s)	313, 325, 331
FalI	AAGNNNNNCTT	2 cut(s)	291, 323
FauNDI	CATATG	2 cut(s)	1014, 1041
FokI	GGATG	5 cut(s)	475, 598, 632, 1186, 1225
GlaI	GCGC	2 cut(s)	1374, 1428
GsuI	CTGGAG	3 cut(s)	1235, 1244, 1265
HaeII	RGCGCY	1 cut(s)	1430
HapII	CCGG	2 cut(s)	455, 1224
HgaI	GACGC	1 cut(s)	1471
HhaI	GCGC	2 cut(s)	1375, 1429
Hin6I	GCGC	2 cut(s)	1373, 1427
HinP1I	GCGC	2 cut(s)	1373, 1427
HinfI	GANTC	2 cut(s)	13, 859
HpaII	CCGG	2 cut(s)	455, 1224
HphI	GGTGA	5 cut(s)	160, 233, 569, 659, 833
Hpy166II	GTNNAC	1 cut(s)	189
Hpy188I	TCNGA	6 cut(s)	57, 1005, 1032, 1086, 1131, 1435
Hpy188III	TCNNGA	2 cut(s)	550, 856
Hpy8I	GTNNAC	1 cut(s)	189
HpyAV	CCTTC	9 cut(s)	82, 157, 296, 583, 610, 652, 875, 914, 1428
HpyCH4III	ACNGT	2 cut(s)	1184, 1475
HpyCH4V	TGCA	5 cut(s)	383, 580, 1148, 1166, 1479
HpyF3I	CTNAG	5 cut(s)	54, 144, 201, 752, 1434
HspAI	GCGC	2 cut(s)	1373, 1427
LmnI	GCTCC	3 cut(s)	166, 1254, 1284
Lsp1109I	GCAGC	7 cut(s)	130, 1258, 1297, 1300, 1336, 1339, 1436
LweI	GCATC	3 cut(s)	144, 357, 405
MaeIII	GTNAC	4 cut(s)	44, 342, 821, 1103
MboII	GAAGA	5 cut(s)	70, 299, 311, 421, 1444
MlsI	TGGCCA	2 cut(s)	324, 330
MluCI	AATT	2 cut(s)	111, 846
MluNI	TGGCCA	2 cut(s)	324, 330
Mox20I	TGGCCA	2 cut(s)	324, 330
MscI	TGGCCA	2 cut(s)	324, 330
MseI	TTAA	2 cut(s)	183, 309
MslI	CAYNNNNRTG	3 cut(s)	318, 324, 330
Msp20I	TGGCCA	2 cut(s)	324, 330
MspI	CCGG	2 cut(s)	455, 1224
MspR9I	CCNGG	4 cut(s)	372, 456, 995, 1170
Mva1269I	GAATGC	2 cut(s)	481, 1471
MvaI	CCWGG	3 cut(s)	372, 995, 1170
MvnI	CGCG	1 cut(s)	1375
NciI	CCSGG	1 cut(s)	456
NcoI	CCATGG	3 cut(s)	313, 325, 331
NdeI	CATATG	2 cut(s)	1014, 1041
NmuCI	GTSAC	1 cut(s)	821
NspI	RCATGY	2 cut(s)	1354, 1402
PagI	TCATGA	1 cut(s)	855
PciI	ACATGT	1 cut(s)	1350
PctI	GAATGC	2 cut(s)	481, 1471
PfeI	GAWTC	2 cut(s)	13, 859
PscI	ACATGT	1 cut(s)	1350
Psp6I	CCWGG	3 cut(s)	370, 993, 1168
PspGI	CCWGG	3 cut(s)	370, 993, 1168
PspPI	GGNCC	9 cut(s)	389, 398, 443, 452, 991, 1018, 1036, 1063, 1093
PstI	CTGCAG	1 cut(s)	1150
RsaI	GTAC	2 cut(s)	1152, 1355
RsaNI	GTAC	2 cut(s)	1151, 1354
RseI	CAYNNNNRTG	3 cut(s)	318, 324, 330
SaqAI	TTAA	2 cut(s)	183, 309
Sau96I	GGNCC	9 cut(s)	389, 398, 443, 452, 991, 1018, 1036, 1063, 1093
ScrFI	CCNGG	4 cut(s)	372, 456, 995, 1170
SfaNI	GCATC	3 cut(s)	144, 357, 405
SfcI	CTRYAG	1 cut(s)	1146
SfiI	GGCCNNNNNGGCC	2 cut(s)	397, 451
SmiMI	CAYNNNNRTG	3 cut(s)	318, 324, 330
Sse9I	AATT	2 cut(s)	111, 846
SsiI	CCGC	3 cut(s)	486, 1194, 1375
StyD4I	CCNGG	4 cut(s)	370, 454, 993, 1168
StyI	CCWWGG	3 cut(s)	313, 325, 331
TaaI	ACNGT	2 cut(s)	1184, 1475
TasI	AATT	2 cut(s)	111, 846
TatI	WGTACW	1 cut(s)	1150
TauI	GCSGC	2 cut(s)	489, 1378
TfiI	GAWTC	2 cut(s)	13, 859
Tru1I	TTAA	2 cut(s)	183, 309
Tru9I	TTAA	2 cut(s)	183, 309
TscAI	CASTG	2 cut(s)	220, 1462
TseFI	GTSAC	1 cut(s)	821
TseI	GCWGC	8 cut(s)	118, 1246, 1285, 1288, 1324, 1327, 1424, 1479
Tsp45I	GTSAC	1 cut(s)	821
TspDTI	ATGAA	9 cut(s)	149, 300, 488, 602, 829, 872, 962, 1193, 1406
TspRI	CASTG	2 cut(s)	220, 1462
XagI	CCTNNNNNAGG	2 cut(s)	579, 1167
XapI	RAATTY	1 cut(s)	111
XceI	RCATGY	2 cut(s)	1354, 1402
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1073

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.