MD04G1208200.v1.1

mediator of RNA polymerase II transcription subunit

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
Physical Location & Seq
Reverse (-)
29316029 .. 29319231
3203 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1208200.v1.1.491

Sequence Viewer

Length: 1755 bp
ATGAGTAAACAGGAGATGATGAAGCTTCAGACCTGTGTTCTCAAAGTTAATATTGACTGTGATGGATGCAAGCATAAGATAAAGAAATTGCTGCAGAAAATCGATGGTGTGTACACAACAAGTATAGATGCAGAGCATAGCAAGGTGACTGTGACAGGGAATGTTGATCCATACACAATCATCAAGAAACTCGAAAAAAAGGGGAAACATGCAGAACTCTGGGGAGGTTCAAAGGGTTCAAATTTCAATCAAGCCCAGCTCAACAACCAGTTCAAGAACATGGCTGTGCCGGTCCAGAACGCGAAAGGCGGTGGCCACCAGCAACATCCACAAAAGGGCGGAGGAGGCCATCAGCAACAACCCCAAAAGGGCGGAGGAGGTCACCAGCAGCAACACCAACAGATGAAAGGGGGTAATGGTAATGTTATGAAGGCGCCTCAGAAGGACCAGAAGTCTGTGAAGTTCAATCTGCCGGCGGAAGGGGAGGAATTTGACGGTAGCGATTTCGACGAGTATGACGATGAATTCGATGATGAGTTTGATGATGATGAATTCGATGATGATGATTACGATGAGGAGGAAGAGCTTGATCATGGACATCATCAGATGGCTAAGAACAAGGCGATGAGTAATATTGGAAATGGTGCACAAGGAGGTCCTTATGGGAAGACGATGCCGATGATGGGTGGTAATAATGGCCATGGACCACATGGGCCTGCTGGGATGATGAATATGTTGCATGCGATGAACGACAAGAAGTTAGGTGGCGGGGGCGGCGGTGGGGGAGGGTCTGCCAAGAAAGGCGGGGTGATTGATTTCCCTGTGCAAGTAAAGGGTATGGGTGGAAATAACGAAAAGAAGAATGGCAAGGACGGAAATGGAGGAAAGAAAGGTGGTGGAAATGGCAAGGGTGGGGATAAGAAACAAGGTGGTAAAGGTAAGAAAGATGGCAAGGATGGCAAAAAAGGAGGTGGGTTGCTAGGGTGGCTTAGCCGGAGTACGAGTATCGGAAGAGGCGGTTCGAAAGGCGGTGGCGACGAGAAAGGTAAGGGCAAGGGCAATGGAAGCAAAAAGGGTGGGGGCAAACATGAGAAAAATGATTTTCATGACATTGATTTCAATGGCAAAGGAGGCAAAGGAGGCAAAGGAGGCAAGGGTGGGAAAGAAGGCAAGGAGGGCAAAGATGGAAAAGGGGGCAAAGGAGGCAAAGGGGGCAAAGGTGGCAAAGGTGGCAAAGGCAGTGATGATGATGATGAGGATATGCAACAAATGGGTTACATGGGCCAAAAGGGCCAGATGGGTCAAATGGGTCAAATGGGTCATGTGGGAAATATGGGTCAGATGGGGCCGAGGCCTCAAATGGGTCAAATGGGCCGTGGTGGTGAGAATATGGGCCAGATGGGCCAAATGGGTCAAATGGGTGGCTATCCGATGGGGCAGATGGGTAATGTTCCTGCAGTACAAGGACTGCCTGCACAGGCGATGATGAACGGCGGAGGAGGATACTATCAAGGAGGTATGGGGGCCGGCAACCCATATAATCAGCAGCAGCAGCAGTACATGGCCATGATGATGAATCAGCAGAGAGCAGCAGCCAATGGTGGAAATGATATGTACCATCCCATGATGTACCCCCGTCAGCCGCCACCGCCGATGAACTACATGTCCCAACAACCAATGCCATCAGGACCTGCATCTGATCCTTATGCCAGCTACTTCAGTGATGAGAACCCTAATGGTTGTAGTATCATGTAA

Protein Analysis

585

Amino Acids

61.23

Weight (kDa)

8.97

Isoelectric Point (pI)

32.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HMA PF00403 14 - 70 7.2e-15 Heavy-metal-associated domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1699
AccB1I GGYRCC 1 cut(s) 433
AccII CGCG 1 cut(s) 302
AclWI GGATC 2 cut(s) 161, 1694
AcoI YGGCCR 3 cut(s) 313, 697, 1563
AcsI RAATTY 4 cut(s) 241, 488, 524, 551
AcuI CTGAAG 2 cut(s) 11, 1702
AcyI GRCGYC 1 cut(s) 434
AfaI GTAC 6 cut(s) 113, 1000, 1461, 1559, 1616, 1631
AfiI CCNNNNNNNGG 5 cut(s) 335, 368, 479, 683, 1361
AflIII ACRYGT 1 cut(s) 1662
AgsI TTSAA 6 cut(s) 231, 240, 247, 274, 466, 1120
AhdI GACNNNNNGTC 1 cut(s) 451
AloI GAACNNNNNNTCC 2 cut(s) 1649, 1681
AluBI AGCT 4 cut(s) 25, 259, 586, 1713
AluI AGCT 4 cut(s) 25, 259, 586, 1713
Alw21I GWGCWC 1 cut(s) 649
Alw44I GTGCAC 1 cut(s) 645
AlwI GGATC 2 cut(s) 161, 1694
AlwNI CAGNNNCTG 1 cut(s) 1691
ApaLI GTGCAC 1 cut(s) 645
ApeKI GCWGC 7 cut(s) 91, 388, 1546, 1549, 1552, 1589, 1592
ApoI RAATTY 4 cut(s) 241, 488, 524, 551
ArsI GACNNNNNNTTYG 2 cut(s) 509, 541
AspLEI GCGC 1 cut(s) 436
AsuHPI GGTGA 4 cut(s) 157, 374, 820, 1394
AsuII TTCGAA 1 cut(s) 1022
AvaII GGWCC 5 cut(s) 292, 445, 656, 704, 1688
BaeGI GKGCMC 1 cut(s) 649
BalI TGGCCA 3 cut(s) 315, 699, 1565
BanI GGYRCC 1 cut(s) 433
BbsI GAAGAC 1 cut(s) 674
Bbv12I GWGCWC 1 cut(s) 649
BbvI GCAGC 7 cut(s) 78, 400, 1558, 1561, 1564, 1601, 1604
BceAI ACGGC 2 cut(s) 1359, 1507
BciVI GTATCC 1 cut(s) 1496
BclI TGATCA 1 cut(s) 589
BfaI CTAG 1 cut(s) 980
BfmI CTRYAG 2 cut(s) 92, 1455
BfoI RGCGCY 1 cut(s) 437
BfuAI ACCTGC 1 cut(s) 1699
BfuI GTATCC 1 cut(s) 1496
BglI GCCNNNNNGGC 2 cut(s) 1290, 1401
BisI GCNGC 9 cut(s) 92, 389, 775, 1547, 1550, 1553, 1590, 1593, 1643
BlpI GCTNAGC 1 cut(s) 989
BlsI GCNGC 9 cut(s) 93, 390, 776, 1548, 1551, 1554, 1591, 1594, 1644
Bme18I GGWCC 5 cut(s) 292, 445, 656, 704, 1688
BmeRI GACNNNNNGTC 1 cut(s) 451
BmiI GGNNCC 3 cut(s) 435, 1347, 1525
BmsI GCATC 4 cut(s) 56, 118, 663, 1703
BpiI GAAGAC 1 cut(s) 674
Bpu1102I GCTNAGC 1 cut(s) 989
Bpu14I TTCGAA 1 cut(s) 1022
Bsa29I ATCGAT 1 cut(s) 102
BsaHI GRCGYC 1 cut(s) 434
BsaJI CCNNGG 3 cut(s) 700, 1349, 1375
BsaXI ACNNNNNCTCC 2 cut(s) 988, 1018
Bsc4I CCNNNNNNNGG 5 cut(s) 335, 368, 479, 683, 1361
Bse118I RCCGGY 3 cut(s) 289, 472, 1526
Bse1I ACTGG 1 cut(s) 268
Bse3DI GCAATG 1 cut(s) 1066
BseCI ATCGAT 1 cut(s) 102
BseDI CCNNGG 3 cut(s) 700, 1349, 1375
BseGI GGATG 5 cut(s) 71, 325, 729, 961, 1618
BseLI CCNNNNNNNGG 5 cut(s) 335, 368, 479, 683, 1361
BseMI GCAATG 1 cut(s) 1066
BseMII CTCAG 1 cut(s) 452
BseNI ACTGG 1 cut(s) 268
BseRI GAGGAG 4 cut(s) 357, 390, 590, 1512
BseSI GKGCMC 1 cut(s) 649
BseXI GCAGC 7 cut(s) 78, 400, 1558, 1561, 1564, 1601, 1604
BseYI CCCAGC 2 cut(s) 255, 719
BsgI GTGCAG 1 cut(s) 1458
Bsh1236I CGCG 1 cut(s) 302
BshNI GGYRCC 1 cut(s) 433
BshVI ATCGAT 1 cut(s) 102
BsiHKAI GWGCWC 1 cut(s) 649
BsiSI CCGG 4 cut(s) 290, 473, 994, 1527
BslFI GGGAC 1 cut(s) 1651
BslI CCNNNNNNNGG 5 cut(s) 335, 368, 479, 683, 1361
BsmFI GGGAC 1 cut(s) 1651
Bsp119I TTCGAA 1 cut(s) 1022
Bsp1286I GDGCHC 1 cut(s) 649
Bsp1407I TGTACA 1 cut(s) 111
Bsp143I GATC 3 cut(s) 166, 589, 1699
Bsp1720I GCTNAGC 1 cut(s) 989
Bsp19I CCATGG 1 cut(s) 700
BspCNI CTCAG 1 cut(s) 451
BspDI ATCGAT 1 cut(s) 102
BspFNI CGCG 1 cut(s) 302
BspHI TCATGA 1 cut(s) 1105
BspLI GGNNCC 3 cut(s) 435, 1347, 1525
BspMAI CTGCAG 2 cut(s) 96, 1459
BspMI ACCTGC 1 cut(s) 1699
BspPI GGATC 2 cut(s) 161, 1694
BspQI GCTCTTC 1 cut(s) 576
BspT104I TTCGAA 1 cut(s) 1022
BspT107I GGYRCC 1 cut(s) 433
BsrDI GCAATG 1 cut(s) 1066
BsrFI RCCGGY 3 cut(s) 289, 472, 1526
BsrGI TGTACA 1 cut(s) 111
BsrI ACTGG 1 cut(s) 268
BssAI RCCGGY 3 cut(s) 289, 472, 1526
BssECI CCNNGG 3 cut(s) 700, 1349, 1375
BssMI GATC 3 cut(s) 166, 589, 1699
BssNI GRCGYC 1 cut(s) 434
BssT1I CCWWGG 1 cut(s) 700
Bst4CI ACNGT 3 cut(s) 59, 151, 497
Bst6I CTCTTC 2 cut(s) 576, 1006
BstACI GRCGYC 1 cut(s) 434
BstAUI TGTACA 1 cut(s) 111
BstBI TTCGAA 1 cut(s) 1022
BstC8I GCNNGC 7 cut(s) 71, 474, 717, 741, 1473, 1528, 1711
BstDEI CTNAG 3 cut(s) 438, 612, 989
BstDSI CCRYGG 2 cut(s) 700, 1375
BstEII GGTNACC 1 cut(s) 380
BstF5I GGATG 5 cut(s) 71, 325, 729, 961, 1618
BstFNI CGCG 1 cut(s) 302
BstH2I RGCGCY 1 cut(s) 437
BstHHI GCGC 1 cut(s) 436
BstKTI GATC 3 cut(s) 169, 592, 1702
BstMBI GATC 3 cut(s) 166, 589, 1699
BstNSI RCATGY 3 cut(s) 212, 743, 1666
BstPI GGTNACC 1 cut(s) 380
BstSFI CTRYAG 2 cut(s) 92, 1455
BstSLI GKGCMC 1 cut(s) 649
BstUI CGCG 1 cut(s) 302
BstV1I GCAGC 7 cut(s) 78, 400, 1558, 1561, 1564, 1601, 1604
BstV2I GAAGAC 1 cut(s) 674
Bsu15I ATCGAT 1 cut(s) 102
BsuI GTATCC 1 cut(s) 1496
BsuTUI ATCGAT 1 cut(s) 102
BtgI CCRYGG 2 cut(s) 700, 1375
BtgZI GCGATG 3 cut(s) 638, 758, 1496
BtsCI GGATG 5 cut(s) 71, 325, 729, 961, 1618
BtsI GCAGTG 1 cut(s) 1246
BtsIMutI CAGTG 2 cut(s) 1246, 1726
BveI ACCTGC 1 cut(s) 1699
Cac8I GCNNGC 7 cut(s) 71, 474, 717, 741, 1473, 1528, 1711
CaiI CAGNNNCTG 1 cut(s) 1691
CciI TCATGA 1 cut(s) 1105
CfoI GCGC 1 cut(s) 436
Cfr10I RCCGGY 3 cut(s) 289, 472, 1526
ClaI ATCGAT 1 cut(s) 102
Csp6I GTAC 6 cut(s) 112, 999, 1460, 1558, 1615, 1630
CspCI CAANNNNNGTGG 2 cut(s) 1057, 1092
CviQI GTAC 6 cut(s) 112, 999, 1460, 1558, 1615, 1630
DdeI CTNAG 3 cut(s) 438, 612, 989
DinI GGCGCC 1 cut(s) 435
DpnI GATC 3 cut(s) 168, 591, 1701
DpnII GATC 3 cut(s) 166, 589, 1699
DriI GACNNNNNGTC 1 cut(s) 451
EaeI YGGCCR 3 cut(s) 313, 697, 1563
Eam1104I CTCTTC 2 cut(s) 576, 1006
Eam1105I GACNNNNNGTC 1 cut(s) 451
EarI CTCTTC 2 cut(s) 576, 1006
EciI GGCGGA 4 cut(s) 354, 387, 491, 1509
Eco130I CCWWGG 1 cut(s) 700
Eco147I AGGCCT 1 cut(s) 1354
Eco47I GGWCC 5 cut(s) 292, 445, 656, 704, 1688
Eco57I CTGAAG 2 cut(s) 11, 1702
Eco91I GGTNACC 1 cut(s) 380
EcoO109I RGGNCCY 2 cut(s) 656, 1688
EcoO65I GGTNACC 1 cut(s) 380
EcoRI GAATTC 2 cut(s) 524, 551
EcoT14I CCWWGG 1 cut(s) 700
EgeI GGCGCC 1 cut(s) 435
EheI GGCGCC 1 cut(s) 435
ErhI CCWWGG 1 cut(s) 700
FaqI GGGAC 1 cut(s) 1651
FauI CCCGC 2 cut(s) 761, 797
FbaI TGATCA 1 cut(s) 589
Fnu4HI GCNGC 9 cut(s) 92, 389, 775, 1547, 1550, 1553, 1590, 1593, 1643
FokI GGATG 5 cut(s) 78, 312, 736, 968, 1605
Fsp4HI GCNGC 9 cut(s) 92, 389, 775, 1547, 1550, 1553, 1590, 1593, 1643
FspBI CTAG 1 cut(s) 980
GlaI GCGC 1 cut(s) 435
GluI GCNGC 9 cut(s) 92, 389, 775, 1547, 1550, 1553, 1590, 1593, 1643
GsaI CCCAGC 2 cut(s) 259, 723
HaeII RGCGCY 1 cut(s) 437
HapII CCGG 4 cut(s) 290, 473, 994, 1527
HhaI GCGC 1 cut(s) 436
Hin1I GRCGYC 1 cut(s) 434
Hin6I GCGC 1 cut(s) 434
HinP1I GCGC 1 cut(s) 434
HindIII AAGCTT 1 cut(s) 23
HinfI GANTC 1 cut(s) 1576
HpaII CCGG 4 cut(s) 290, 473, 994, 1527
HphI GGTGA 4 cut(s) 157, 374, 820, 1394
Hpy166II GTNNAC 4 cut(s) 8, 112, 114, 647
Hpy188I TCNGA 7 cut(s) 30, 441, 606, 1010, 1341, 1431, 1699
Hpy188III TCNNGA 5 cut(s) 184, 274, 295, 1106, 1686
Hpy8I GTNNAC 4 cut(s) 8, 112, 114, 647
Hpy99I CGWCG 2 cut(s) 512, 1040
HpyAV CCTTC 4 cut(s) 424, 436, 473, 1160
HpyCH4III ACNGT 3 cut(s) 59, 151, 497
HpyF3I CTNAG 3 cut(s) 438, 612, 989
Hsp92I GRCGYC 1 cut(s) 434
HspAI GCGC 1 cut(s) 434
KasI GGCGCC 1 cut(s) 433
KroI GCCGGC 2 cut(s) 472, 1526
KroNI GCCGGC 2 cut(s) 474, 1528
Ksp22I TGATCA 1 cut(s) 589
Kzo9I GATC 3 cut(s) 166, 589, 1699
LguI GCTCTTC 1 cut(s) 576
Lsp1109I GCAGC 7 cut(s) 78, 400, 1558, 1561, 1564, 1601, 1604
LweI GCATC 4 cut(s) 56, 118, 663, 1703
MaeI CTAG 1 cut(s) 980
MaeIII GTNAC 4 cut(s) 145, 151, 380, 1274
MalI GATC 3 cut(s) 168, 591, 1701
MboI GATC 3 cut(s) 166, 589, 1699
MboII GAAGA 4 cut(s) 593, 679, 871, 1023
MhlI GDGCHC 1 cut(s) 649
MlsI TGGCCA 3 cut(s) 315, 699, 1565
MluCI AATT 5 cut(s) 86, 241, 488, 524, 551
MluNI TGGCCA 3 cut(s) 315, 699, 1565
Mly113I GGCGCC 1 cut(s) 434
Mox20I TGGCCA 3 cut(s) 315, 699, 1565
MroNI GCCGGC 2 cut(s) 472, 1526
MscI TGGCCA 3 cut(s) 315, 699, 1565
MseI TTAA 1 cut(s) 48
MslI CAYNNNNRTG 3 cut(s) 284, 1565, 1571
Msp20I TGGCCA 3 cut(s) 315, 699, 1565
MspI CCGG 4 cut(s) 290, 473, 994, 1527
MvnI CGCG 1 cut(s) 302
NaeI GCCGGC 2 cut(s) 474, 1528
NarI GGCGCC 1 cut(s) 434
NcoI CCATGG 1 cut(s) 700
NdeII GATC 3 cut(s) 166, 589, 1699
NgoMIV GCCGGC 2 cut(s) 472, 1526
NlaIV GGNNCC 3 cut(s) 435, 1347, 1525
NmeAIII GCCGAG 1 cut(s) 1374
NmuCI GTSAC 3 cut(s) 145, 151, 380
NspI RCATGY 3 cut(s) 212, 743, 1666
NspV TTCGAA 1 cut(s) 1022
PaeI GCATGC 1 cut(s) 743
PagI TCATGA 1 cut(s) 1105
PceI AGGCCT 1 cut(s) 1354
PciI ACATGT 1 cut(s) 1662
PciSI GCTCTTC 1 cut(s) 576
PcsI WCGNNNNNNNCGW 2 cut(s) 516, 525
PdiI GCCGGC 2 cut(s) 474, 1528
PfeI GAWTC 1 cut(s) 1576
PkrI GCNGC 9 cut(s) 93, 390, 776, 1548, 1551, 1554, 1591, 1594, 1644
PluTI GGCGCC 1 cut(s) 437
PpuMI RGGWCCY 2 cut(s) 656, 1688
PscI ACATGT 1 cut(s) 1662
Psp5II RGGWCCY 2 cut(s) 656, 1688
PspEI GGTNACC 1 cut(s) 380
PspFI CCCAGC 2 cut(s) 255, 719
PspN4I GGNNCC 3 cut(s) 435, 1347, 1525
PspPPI RGGWCCY 2 cut(s) 656, 1688
PstI CTGCAG 2 cut(s) 96, 1459
PstNI CAGNNNCTG 1 cut(s) 1691
RsaI GTAC 6 cut(s) 113, 1000, 1461, 1559, 1616, 1631
RsaNI GTAC 6 cut(s) 112, 999, 1460, 1558, 1615, 1630
RseI CAYNNNNRTG 3 cut(s) 284, 1565, 1571
SapI GCTCTTC 1 cut(s) 576
SaqAI TTAA 1 cut(s) 48
SatI GCNGC 9 cut(s) 92, 389, 775, 1547, 1550, 1553, 1590, 1593, 1643
Sau3AI GATC 3 cut(s) 166, 589, 1699
SduI GDGCHC 1 cut(s) 649
SfaNI GCATC 4 cut(s) 56, 118, 663, 1703
SfcI CTRYAG 2 cut(s) 92, 1455
SfiI GGCCNNNNNGGCC 2 cut(s) 1290, 1401
SfoI GGCGCC 1 cut(s) 435
SfuI TTCGAA 1 cut(s) 1022
SinI GGWCC 5 cut(s) 292, 445, 656, 704, 1688
SmiMI CAYNNNNRTG 3 cut(s) 284, 1565, 1571
SphI GCATGC 1 cut(s) 743
Sse9I AATT 5 cut(s) 86, 241, 488, 524, 551
SseBI AGGCCT 1 cut(s) 1354
SspDI GGCGCC 1 cut(s) 433
SspI AATATT 2 cut(s) 52, 634
SspMI CTAG 1 cut(s) 980
StuI AGGCCT 1 cut(s) 1354
StyI CCWWGG 1 cut(s) 700
TaaI ACNGT 3 cut(s) 59, 151, 497
TaqI TCGA 6 cut(s) 102, 192, 507, 528, 555, 1022
TasI AATT 5 cut(s) 86, 241, 488, 524, 551
TatI WGTACW 3 cut(s) 111, 1459, 1557
TauI GCSGC 2 cut(s) 777, 1645
TfiI GAWTC 1 cut(s) 1576
Tru1I TTAA 1 cut(s) 48
Tru9I TTAA 1 cut(s) 48
TscAI CASTG 2 cut(s) 1246, 1726
TseFI GTSAC 3 cut(s) 145, 151, 380
TseI GCWGC 7 cut(s) 91, 388, 1546, 1549, 1552, 1589, 1592
Tsp45I GTSAC 3 cut(s) 145, 151, 380
TspGWI ACGGA 1 cut(s) 888
TspRI CASTG 2 cut(s) 1246, 1726
VneI GTGCAC 1 cut(s) 645
VpaK11BI GGWCC 5 cut(s) 292, 445, 656, 704, 1688
XapI RAATTY 4 cut(s) 241, 488, 524, 551
XceI RCATGY 3 cut(s) 212, 743, 1666
XcmI CCANNNNNNNNNTGG 1 cut(s) 707
XspI CTAG 1 cut(s) 980
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.