AT3G05810

IGR

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0007253
Physical Location & Seq
Reverse (-)
1730966 .. 1732656
1691 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G05810.1

Sequence Viewer

Length: 339 bp
ATGGCGTGGACACGATTGATTCAGAGCGCGAGAGCAGCTCTAGGGACAGCGCAATCGTGCTCGACTCTTGGCCTCCCTAGATTCCACTCCTCCAAACCAGCCACTTATTTCGTGAAGGTAGGGATTCCAGAGTTTCTAGGTGGGATTGGAAGAGGAGCTGAGACTCACATTGCCAAAATTGAAACTGAGATTGGTGACCTTCATAAGCTTCTTGTGACGCGTACTCTCAGACTCAAGAAACTTGGCATTCCTTGCAAACATAGGAAACTGATACTGAAGTATGGCCAGAAATACAGGTTAGGGCTATGGAAACCTAGAGCTGACGCTATTAAGGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
IGR

Protein Analysis

112

Amino Acids

12.43

Weight (kDa)

10.56

Isoelectric Point (pI)

27.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAM_Ribosomal_mS41 PF09597 36 - 101 7.1e-19 Small ribosomal subunit protein mS41 SAM domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 29, 220
AcoI YGGCCR 1 cut(s) 283
AcuI CTGAAG 1 cut(s) 296
AfaI GTAC 1 cut(s) 223
AflIII ACRYGT 1 cut(s) 218
AgsI TTSAA 1 cut(s) 182
AjuI GAANNNNNNNTTGG 2 cut(s) 174, 206
AluBI AGCT 4 cut(s) 38, 158, 208, 320
AluI AGCT 4 cut(s) 38, 158, 208, 320
Alw21I GWGCWC 1 cut(s) 62
Alw26I GTCTC 1 cut(s) 155
AoxI GGCC 3 cut(s) 70, 283, 333
ApeKI GCWGC 1 cut(s) 35
AspLEI GCGC 2 cut(s) 29, 52
AsuHPI GGTGA 1 cut(s) 206
BaeI ACNNNNGTAYC 2 cut(s) 263, 296
BalI TGGCCA 1 cut(s) 285
Bbv12I GWGCWC 1 cut(s) 62
BbvI GCAGC 1 cut(s) 47
BcoDI GTCTC 1 cut(s) 155
BfaI CTAG 4 cut(s) 41, 78, 137, 315
BisI GCNGC 1 cut(s) 36
BlsI GCNGC 1 cut(s) 37
BplI GAGNNNNNCTC 2 cut(s) 22, 54
BpuEI CTTGAG 1 cut(s) 218
Bse3DI GCAATG 1 cut(s) 168
BseMI GCAATG 1 cut(s) 168
BseMII CTCAG 3 cut(s) 150, 177, 241
BseRI GAGGAG 2 cut(s) 79, 168
BseXI GCAGC 1 cut(s) 47
Bsh1236I CGCG 2 cut(s) 29, 220
BshFI GGCC 3 cut(s) 72, 285, 335
BsiHKAI GWGCWC 1 cut(s) 62
BslFI GGGAC 1 cut(s) 58
BsmAI GTCTC 1 cut(s) 155
BsmFI GGGAC 1 cut(s) 58
BsmI GAATGC 1 cut(s) 246
BsnI GGCC 3 cut(s) 72, 285, 335
Bsp1286I GDGCHC 1 cut(s) 62
BspANI GGCC 3 cut(s) 72, 285, 335
BspCNI CTCAG 3 cut(s) 151, 178, 240
BspFNI CGCG 2 cut(s) 29, 220
BsrDI GCAATG 1 cut(s) 168
Bst6I CTCTTC 1 cut(s) 145
BstAPI GCANNNNNTGC 1 cut(s) 252
BstDEI CTNAG 3 cut(s) 159, 186, 227
BstEII GGTNACC 1 cut(s) 194
BstFNI CGCG 2 cut(s) 29, 220
BstHHI GCGC 2 cut(s) 29, 52
BstMAI GTCTC 1 cut(s) 155
BstMWI GCNNNNNNNGC 3 cut(s) 35, 252, 332
BstPI GGTNACC 1 cut(s) 194
BstUI CGCG 2 cut(s) 29, 220
BstV1I GCAGC 1 cut(s) 47
BsuRI GGCC 3 cut(s) 72, 285, 335
CfoI GCGC 2 cut(s) 29, 52
CseI GACGC 2 cut(s) 226, 332
Csp6I GTAC 1 cut(s) 222
CviJI RGCY 9 cut(s) 38, 72, 101, 158, 208, 285, 304, 320, 335
CviKI_1 RGCY 9 cut(s) 38, 72, 101, 158, 208, 285, 304, 320, 335
CviQI GTAC 1 cut(s) 222
DdeI CTNAG 3 cut(s) 159, 186, 227
EaeI YGGCCR 1 cut(s) 283
Eam1104I CTCTTC 1 cut(s) 145
EarI CTCTTC 1 cut(s) 145
Eco147I AGGCCT 1 cut(s) 335
Eco57I CTGAAG 1 cut(s) 296
Eco91I GGTNACC 1 cut(s) 194
EcoO65I GGTNACC 1 cut(s) 194
FaiI YATR 4 cut(s) 204, 261, 282, 307
FaqI GGGAC 1 cut(s) 58
Fnu4HI GCNGC 1 cut(s) 36
Fsp4HI GCNGC 1 cut(s) 36
FspBI CTAG 4 cut(s) 41, 78, 137, 315
GlaI GCGC 2 cut(s) 28, 51
GluI GCNGC 1 cut(s) 36
HaeIII GGCC 3 cut(s) 72, 285, 335
HgaI GACGC 2 cut(s) 226, 332
HhaI GCGC 2 cut(s) 29, 52
Hin6I GCGC 2 cut(s) 27, 50
HinP1I GCGC 2 cut(s) 27, 50
HindIII AAGCTT 1 cut(s) 206
HinfI GANTC 6 cut(s) 19, 64, 81, 124, 163, 231
HphI GGTGA 1 cut(s) 206
Hpy166II GTNNAC 1 cut(s) 9
Hpy188I TCNGA 2 cut(s) 24, 230
Hpy188III TCNNGA 3 cut(s) 112, 128, 235
Hpy8I GTNNAC 1 cut(s) 9
HpyAV CCTTC 2 cut(s) 109, 209
HpyCH4V TGCA 1 cut(s) 255
HpyF10VI GCNNNNNNNGC 3 cut(s) 35, 252, 332
HpyF3I CTNAG 3 cut(s) 159, 186, 227
HspAI GCGC 2 cut(s) 27, 50
LmnI GCTCC 1 cut(s) 155
LpnPI CCDG 4 cut(s) 111, 141, 280, 299
Lsp1109I GCAGC 1 cut(s) 47
MaeI CTAG 4 cut(s) 41, 78, 137, 315
MaeIII GTNAC 2 cut(s) 194, 214
MboII GAAGA 1 cut(s) 162
MhlI GDGCHC 1 cut(s) 62
MlsI TGGCCA 1 cut(s) 285
MluCI AATT 1 cut(s) 177
MluI ACGCGT 1 cut(s) 218
MluNI TGGCCA 1 cut(s) 285
MlyI GAGTC 3 cut(s) 58, 157, 225
MnlI CCTC 3 cut(s) 83, 100, 146
Mox20I TGGCCA 1 cut(s) 285
MscI TGGCCA 1 cut(s) 285
MseI TTAA 1 cut(s) 330
Msp20I TGGCCA 1 cut(s) 285
Mva1269I GAATGC 1 cut(s) 246
MvnI CGCG 2 cut(s) 29, 220
MwoI GCNNNNNNNGC 3 cut(s) 35, 252, 332
NmuCI GTSAC 2 cut(s) 194, 214
PceI AGGCCT 1 cut(s) 335
PctI GAATGC 1 cut(s) 246
PfeI GAWTC 3 cut(s) 19, 81, 124
PkrI GCNGC 1 cut(s) 37
PleI GAGTC 3 cut(s) 58, 157, 225
PpsI GAGTC 3 cut(s) 58, 157, 225
PspEI GGTNACC 1 cut(s) 194
RsaI GTAC 1 cut(s) 223
RsaNI GTAC 1 cut(s) 222
SaqAI TTAA 1 cut(s) 330
SatI GCNGC 1 cut(s) 36
SchI GAGTC 3 cut(s) 58, 157, 225
SduI GDGCHC 1 cut(s) 62
SetI ASST 9 cut(s) 40, 120, 142, 160, 201, 210, 299, 316, 322
SmlI CTYRAG 1 cut(s) 233
SmoI CTYRAG 1 cut(s) 233
Sse9I AATT 1 cut(s) 177
SseBI AGGCCT 1 cut(s) 335
SspMI CTAG 4 cut(s) 41, 78, 137, 315
StuI AGGCCT 1 cut(s) 335
TaqI TCGA 1 cut(s) 62
TasI AATT 1 cut(s) 177
TfiI GAWTC 3 cut(s) 19, 81, 124
Tru1I TTAA 1 cut(s) 330
Tru9I TTAA 1 cut(s) 330
TseFI GTSAC 2 cut(s) 194, 214
TseI GCWGC 1 cut(s) 35
Tsp45I GTSAC 2 cut(s) 194, 214
TspDTI ATGAA 1 cut(s) 191
XspI CTAG 4 cut(s) 41, 78, 137, 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.