Rroxscaffold_2G00105240

IGR

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0007253
Physical Location & Seq
Forward (+)
28661859 .. 28663819
1961 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00105240.1

Sequence Viewer

Length: 327 bp
ATGGCTTGGAGGCAAATACTGTTCCACACCAGAACTATTTTGACGCCGCATTCAACAACTGGGCTTGCAAGATTCTCCACCAAATCAACCCCATACTTGGAGAAAGTCGGGATACCAGAATTTTTAAAAGGAATAGGCAATGGAGTGGAAGCTCATGTGGCTAAAATTGAATCTGAGATTGGTGACTTTCAGAAGCTGCTTGTCACTCGTACTCTCAGACTGAAGAAACTTGGCATCCCTGTCAAACAAAGGAAGCTGATCTTGAAATACACCCACAAGTATAGGCTGGGACTCTGGCGGCCTCTAGCTCAGCCAATGAAATCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
IGR

Protein Analysis

108

Amino Acids

12.39

Weight (kDa)

10.72

Isoelectric Point (pI)

22.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAM_Ribosomal_mS41 PF09597 31 - 97 1.8e-19 Small ribosomal subunit protein mS41 SAM domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 47, 298
AcsI RAATTY 1 cut(s) 119
AcuI CTGAAG 1 cut(s) 242
AcyI GRCGYC 1 cut(s) 44
AfaI GTAC 1 cut(s) 211
AfiI CCNNNNNNNGG 1 cut(s) 97
AgsI TTSAA 3 cut(s) 54, 170, 265
AjuI GAANNNNNNNTTGG 2 cut(s) 162, 194
AluBI AGCT 4 cut(s) 152, 196, 256, 308
AluI AGCT 4 cut(s) 152, 196, 256, 308
AlwNI CAGNNNCTG 1 cut(s) 196
AoxI GGCC 1 cut(s) 299
ApeKI GCWGC 1 cut(s) 196
ApoI RAATTY 1 cut(s) 119
AsuHPI GGTGA 1 cut(s) 194
BbvI GCAGC 1 cut(s) 183
BciVI GTATCC 1 cut(s) 105
BfaI CTAG 2 cut(s) 305, 325
BfuI GTATCC 1 cut(s) 105
BisI GCNGC 3 cut(s) 47, 197, 299
BlpI GCTNAGC 1 cut(s) 309
BlsI GCNGC 3 cut(s) 48, 198, 300
BmrI ACTGGG 1 cut(s) 69
BmsI GCATC 1 cut(s) 243
BmuI ACTGGG 1 cut(s) 69
Bpu1102I GCTNAGC 1 cut(s) 309
BsaHI GRCGYC 1 cut(s) 44
Bsc4I CCNNNNNNNGG 1 cut(s) 97
Bse1I ACTGG 1 cut(s) 64
Bse3DI GCAATG 1 cut(s) 145
BseGI GGATG 1 cut(s) 234
BseLI CCNNNNNNNGG 1 cut(s) 97
BseMI GCAATG 1 cut(s) 145
BseMII CTCAG 3 cut(s) 165, 229, 323
BseNI ACTGG 1 cut(s) 64
BseXI GCAGC 1 cut(s) 183
BseYI CCCAGC 1 cut(s) 286
BshFI GGCC 1 cut(s) 301
BslFI GGGAC 1 cut(s) 303
BslI CCNNNNNNNGG 1 cut(s) 97
BsmFI GGGAC 1 cut(s) 303
BsmI GAATGC 1 cut(s) 49
BsnI GGCC 1 cut(s) 301
Bsp143I GATC 1 cut(s) 258
Bsp1720I GCTNAGC 1 cut(s) 309
BspACI CCGC 2 cut(s) 47, 298
BspANI GGCC 1 cut(s) 301
BspCNI CTCAG 3 cut(s) 166, 228, 322
BsrDI GCAATG 1 cut(s) 145
BsrI ACTGG 1 cut(s) 64
BssMI GATC 1 cut(s) 258
BssNI GRCGYC 1 cut(s) 44
Bst4CI ACNGT 1 cut(s) 21
BstACI GRCGYC 1 cut(s) 44
BstC8I GCNNGC 1 cut(s) 66
BstDEI CTNAG 3 cut(s) 174, 215, 309
BstF5I GGATG 1 cut(s) 234
BstKTI GATC 1 cut(s) 261
BstMBI GATC 1 cut(s) 258
BstMWI GCNNNNNNNGC 1 cut(s) 158
BstV1I GCAGC 1 cut(s) 183
BsuI GTATCC 1 cut(s) 105
BsuRI GGCC 1 cut(s) 301
BtsCI GGATG 1 cut(s) 234
Cac8I GCNNGC 1 cut(s) 66
CaiI CAGNNNCTG 1 cut(s) 196
CseI GACGC 1 cut(s) 52
Csp6I GTAC 1 cut(s) 210
CviAII CATG 1 cut(s) 155
CviQI GTAC 1 cut(s) 210
DdeI CTNAG 3 cut(s) 174, 215, 309
DpnI GATC 1 cut(s) 260
DpnII GATC 1 cut(s) 258
DraI TTTAAA 1 cut(s) 126
Eco57I CTGAAG 1 cut(s) 242
FaeI CATG 1 cut(s) 158
FaiI YATR 3 cut(s) 94, 156, 282
FalI AAGNNNNNCTT 2 cut(s) 245, 277
FaqI GGGAC 1 cut(s) 303
FatI CATG 1 cut(s) 154
Fnu4HI GCNGC 3 cut(s) 47, 197, 299
FokI GGATG 1 cut(s) 221
Fsp4HI GCNGC 3 cut(s) 47, 197, 299
FspBI CTAG 2 cut(s) 305, 325
GluI GCNGC 3 cut(s) 47, 197, 299
GsaI CCCAGC 1 cut(s) 290
HaeIII GGCC 1 cut(s) 301
HgaI GACGC 1 cut(s) 52
Hin1I GRCGYC 1 cut(s) 44
Hin1II CATG 1 cut(s) 158
HinfI GANTC 3 cut(s) 72, 170, 291
HphI GGTGA 1 cut(s) 194
Hpy188I TCNGA 3 cut(s) 175, 192, 218
Hpy188III TCNNGA 2 cut(s) 109, 262
HpyCH4III ACNGT 1 cut(s) 21
HpyCH4V TGCA 1 cut(s) 68
HpyF10VI GCNNNNNNNGC 1 cut(s) 158
HpyF3I CTNAG 3 cut(s) 174, 215, 309
Hsp92I GRCGYC 1 cut(s) 44
Hsp92II CATG 1 cut(s) 158
Kzo9I GATC 1 cut(s) 258
LpnPI CCDG 6 cut(s) 43, 45, 129, 252, 272, 280
Lsp1109I GCAGC 1 cut(s) 183
LweI GCATC 1 cut(s) 243
MaeI CTAG 2 cut(s) 305, 325
MaeIII GTNAC 2 cut(s) 182, 202
MalI GATC 1 cut(s) 260
MboI GATC 1 cut(s) 258
MboII GAAGA 1 cut(s) 235
MluCI AATT 2 cut(s) 119, 165
MlyI GAGTC 1 cut(s) 285
MnlI CCTC 2 cut(s) 3, 312
MseI TTAA 1 cut(s) 125
Mva1269I GAATGC 1 cut(s) 49
MwoI GCNNNNNNNGC 1 cut(s) 158
NdeII GATC 1 cut(s) 258
NlaIII CATG 1 cut(s) 158
NmuCI GTSAC 2 cut(s) 182, 202
PctI GAATGC 1 cut(s) 49
PfeI GAWTC 2 cut(s) 72, 170
PkrI GCNGC 3 cut(s) 48, 198, 300
PleI GAGTC 1 cut(s) 285
PpsI GAGTC 1 cut(s) 285
PspFI CCCAGC 1 cut(s) 286
PstNI CAGNNNCTG 1 cut(s) 196
RsaI GTAC 1 cut(s) 211
RsaNI GTAC 1 cut(s) 210
SaqAI TTAA 1 cut(s) 125
SatI GCNGC 3 cut(s) 47, 197, 299
Sau3AI GATC 1 cut(s) 258
SchI GAGTC 1 cut(s) 285
SetI ASST 4 cut(s) 154, 198, 258, 310
SfaNI GCATC 1 cut(s) 243
Sse9I AATT 2 cut(s) 119, 165
SsiI CCGC 2 cut(s) 47, 298
SspMI CTAG 2 cut(s) 305, 325
TaaI ACNGT 1 cut(s) 21
TasI AATT 2 cut(s) 119, 165
TauI GCSGC 2 cut(s) 49, 301
TfiI GAWTC 2 cut(s) 72, 170
Tru1I TTAA 1 cut(s) 125
Tru9I TTAA 1 cut(s) 125
TseFI GTSAC 2 cut(s) 182, 202
TseI GCWGC 1 cut(s) 196
Tsp45I GTSAC 2 cut(s) 182, 202
XapI RAATTY 1 cut(s) 119
XspI CTAG 2 cut(s) 305, 325
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.