Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000545.1

Orthogroup ID

OG0007253

Physical Location & Seq

Genomic Coordinates Reverse (-)

7424 .. 9889

Gene Structure 2466 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000545.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

atgcacaagttcggtggtatagcaatgcagctcgcccatcatgccaaatgggttgaggtggtaaaacccagagcactccgccaaagccccctctcccagttcgcagtctcgactgttcttcttggcagcttaccagcactcaaacagaagatggcttggaggcaaatactgttccacaccagagcaattttgactccacattcaacaactgggctcgccagcttctccaccaaatcaaccccatacttggagaaagtcgggatacccgaatttttaaaaggaataggcaatggggtggaagctcatgtggctaaaattgaatctgagattggtgactttcagaagcttcttgtcactcgtactctcagactgaagaaacttggcatccctgtcaaacaaaggaagctgatcttgaaatacacccacaagtataggctcggactctggaggcctctagctcagccagtgaaatcctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IGR

Protein Analysis

158

Amino Acids

17.75

Weight (kDa)

10.83

Isoelectric Point (pI)

37.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007253)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05810 AT3G05810
fragaria_vesca	FvH4_6g32060 FvH4_6g32060 FvH4_6g32060
malus_domestica	MD07G1055000.v1.1 MD10G1090000.v1.1 MD15G1427600.v1.1
prunus_persica	Prupe.2G047800_v2.0.a1 Prupe.2G047800_v2.0.a1 Prupe.3G062500_v2.0.a1 Prupe.3G062500_v2.0.a1 Prupe.3G062500_v2.0.a1
pyrus_communis	pycom07g04320 pycom10g07350
rosa_chinensis	RchiOBHm_Chr2g0139741
rosa_laevigata	RLG00000019829
rosa_multiflora	Rmu_sc0000545.1_g000003
rosa_roxburghii	Rroxscaffold_2G00105240
rosa_rugosa	Rorug02G0359500 Rorug02G0359600
rosa_samantha	Rh2AG409300 Rh2BG419700 Rh2CG395600
rosa_wichuraiana	Rw2G033430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	79
AcsI	RAATTY	1 cut(s)	269
AcuI	CTGAAG	1 cut(s)	392
AfaI	GTAC	1 cut(s)	361
AfiI	CCNNNNNNNGG	1 cut(s)	247
AgsI	TTSAA	3 cut(s)	204, 320, 415
AjuI	GAANNNNNNNTTGG	2 cut(s)	312, 344
AluBI	AGCT	7 cut(s)	31, 129, 222, 302, 346, 406, 458
AluI	AGCT	7 cut(s)	31, 129, 222, 302, 346, 406, 458
Alw21I	GWGCWC	1 cut(s)	76
Alw26I	GTCTC	1 cut(s)	112
AoxI	GGCC	1 cut(s)	449
ApeKI	GCWGC	2 cut(s)	28, 126
ApoI	RAATTY	1 cut(s)	269
AsuHPI	GGTGA	1 cut(s)	344
BanII	GRGCYC	1 cut(s)	216
Bbv12I	GWGCWC	1 cut(s)	76
BbvI	GCAGC	2 cut(s)	40, 138
BccI	CCATC	2 cut(s)	45, 145
BciVI	GTATCC	1 cut(s)	255
BcoDI	GTCTC	1 cut(s)	112
BfaI	CTAG	2 cut(s)	455, 475
BfuI	GTATCC	1 cut(s)	255
BisI	GCNGC	2 cut(s)	29, 127
BlpI	GCTNAGC	1 cut(s)	459
BlsI	GCNGC	2 cut(s)	30, 128
BmrI	ACTGGG	2 cut(s)	91, 219
BmsI	GCATC	1 cut(s)	393
BmuI	ACTGGG	2 cut(s)	91, 219
BpmI	CTGGAG	1 cut(s)	466
Bpu1102I	GCTNAGC	1 cut(s)	459
Bsc4I	CCNNNNNNNGG	1 cut(s)	247
Bse1I	ACTGG	3 cut(s)	97, 214, 464
Bse3DI	GCAATG	2 cut(s)	30, 295
BseGI	GGATG	1 cut(s)	384
BseLI	CCNNNNNNNGG	1 cut(s)	247
BseMI	GCAATG	2 cut(s)	30, 295
BseMII	CTCAG	3 cut(s)	315, 379, 473
BseNI	ACTGG	3 cut(s)	97, 214, 464
BseXI	GCAGC	2 cut(s)	40, 138
BshFI	GGCC	1 cut(s)	451
BsiHKAI	GWGCWC	1 cut(s)	76
BslI	CCNNNNNNNGG	1 cut(s)	247
BsmAI	GTCTC	1 cut(s)	112
BsnI	GGCC	1 cut(s)	451
Bsp1286I	GDGCHC	2 cut(s)	76, 216
Bsp143I	GATC	1 cut(s)	408
Bsp1720I	GCTNAGC	1 cut(s)	459
BspACI	CCGC	1 cut(s)	79
BspANI	GGCC	1 cut(s)	451
BspCNI	CTCAG	3 cut(s)	316, 378, 472
BsrDI	GCAATG	2 cut(s)	30, 295
BsrI	ACTGG	3 cut(s)	97, 214, 464
BssMI	GATC	1 cut(s)	408
Bst4CI	ACNGT	2 cut(s)	115, 171
BstC8I	GCNNGC	3 cut(s)	33, 216, 220
BstDEI	CTNAG	3 cut(s)	324, 365, 459
BstF5I	GGATG	1 cut(s)	384
BstKTI	GATC	1 cut(s)	411
BstMAI	GTCTC	1 cut(s)	112
BstMBI	GATC	1 cut(s)	408
BstMWI	GCNNNNNNNGC	2 cut(s)	41, 308
BstV1I	GCAGC	2 cut(s)	40, 138
BsuI	GTATCC	1 cut(s)	255
BsuRI	GGCC	1 cut(s)	451
BtsCI	GGATG	1 cut(s)	384
BtsIMutI	CAGTG	1 cut(s)	471
Cac8I	GCNNGC	3 cut(s)	33, 216, 220
Csp6I	GTAC	1 cut(s)	360
CspCI	CAANNNNNGTGG	1 cut(s)	30
CviAII	CATG	2 cut(s)	41, 305
CviQI	GTAC	1 cut(s)	360
DdeI	CTNAG	3 cut(s)	324, 365, 459
DpnI	GATC	1 cut(s)	410
DpnII	GATC	1 cut(s)	408
DraI	TTTAAA	1 cut(s)	276
EciI	GGCGGA	1 cut(s)	68
Eco147I	AGGCCT	1 cut(s)	451
Eco24I	GRGCYC	1 cut(s)	216
Eco57I	CTGAAG	1 cut(s)	392
EcoT38I	GRGCYC	1 cut(s)	216
FaeI	CATG	2 cut(s)	44, 308
FaiI	YATR	5 cut(s)	20, 42, 244, 306, 432
FalI	AAGNNNNNCTT	2 cut(s)	395, 427
FatI	CATG	2 cut(s)	40, 304
Fnu4HI	GCNGC	2 cut(s)	29, 127
FokI	GGATG	1 cut(s)	371
FriOI	GRGCYC	1 cut(s)	216
Fsp4HI	GCNGC	2 cut(s)	29, 127
FspBI	CTAG	2 cut(s)	455, 475
GluI	GCNGC	2 cut(s)	29, 127
GsuI	CTGGAG	1 cut(s)	466
HaeIII	GGCC	1 cut(s)	451
Hin1II	CATG	2 cut(s)	44, 308
HindIII	AAGCTT	1 cut(s)	344
HinfI	GANTC	3 cut(s)	193, 320, 441
HphI	GGTGA	1 cut(s)	344
Hpy188I	TCNGA	4 cut(s)	325, 342, 368, 440
Hpy188III	TCNNGA	4 cut(s)	109, 259, 412, 445
HpyCH4III	ACNGT	2 cut(s)	115, 171
HpyCH4V	TGCA	2 cut(s)	4, 28
HpyF10VI	GCNNNNNNNGC	2 cut(s)	41, 308
HpyF3I	CTNAG	3 cut(s)	324, 365, 459
Hsp92II	CATG	2 cut(s)	44, 308
Kzo9I	GATC	1 cut(s)	408
LpnPI	CCDG	8 cut(s)	82, 110, 147, 193, 195, 232, 402, 430
Lsp1109I	GCAGC	2 cut(s)	40, 138
LweI	GCATC	1 cut(s)	393
MaeI	CTAG	2 cut(s)	455, 475
MaeIII	GTNAC	2 cut(s)	332, 352
MalI	GATC	1 cut(s)	410
MboI	GATC	1 cut(s)	408
MboII	GAAGA	3 cut(s)	110, 160, 385
MhlI	GDGCHC	2 cut(s)	76, 216
MluCI	AATT	3 cut(s)	186, 269, 315
MlyI	GAGTC	2 cut(s)	187, 435
MnlI	CCTC	5 cut(s)	49, 101, 153, 441, 462
MseI	TTAA	1 cut(s)	275
MwoI	GCNNNNNNNGC	2 cut(s)	41, 308
NdeII	GATC	1 cut(s)	408
NlaIII	CATG	2 cut(s)	44, 308
NmuCI	GTSAC	2 cut(s)	332, 352
PceI	AGGCCT	1 cut(s)	451
PcsI	WCGNNNNNNNCGW	1 cut(s)	264
PfeI	GAWTC	1 cut(s)	320
PkrI	GCNGC	2 cut(s)	30, 128
PleI	GAGTC	2 cut(s)	187, 435
PpsI	GAGTC	2 cut(s)	187, 435
RsaI	GTAC	1 cut(s)	361
RsaNI	GTAC	1 cut(s)	360
SaqAI	TTAA	1 cut(s)	275
SatI	GCNGC	2 cut(s)	29, 127
Sau3AI	GATC	1 cut(s)	408
SchI	GAGTC	2 cut(s)	187, 435
SduI	GDGCHC	2 cut(s)	76, 216
SetI	ASST	8 cut(s)	33, 60, 131, 224, 304, 348, 408, 460
SfaNI	GCATC	1 cut(s)	393
Sse9I	AATT	3 cut(s)	186, 269, 315
SseBI	AGGCCT	1 cut(s)	451
SsiI	CCGC	1 cut(s)	79
SspMI	CTAG	2 cut(s)	455, 475
StuI	AGGCCT	1 cut(s)	451
TaaI	ACNGT	2 cut(s)	115, 171
TaqI	TCGA	1 cut(s)	110
TasI	AATT	3 cut(s)	186, 269, 315
TfiI	GAWTC	1 cut(s)	320
Tru1I	TTAA	1 cut(s)	275
Tru9I	TTAA	1 cut(s)	275
TscAI	CASTG	1 cut(s)	471
TseFI	GTSAC	2 cut(s)	332, 352
TseI	GCWGC	2 cut(s)	28, 126
Tsp45I	GTSAC	2 cut(s)	332, 352
TspRI	CASTG	1 cut(s)	471
XapI	RAATTY	1 cut(s)	269
XspI	CTAG	2 cut(s)	455, 475

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.