IGR
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G05810 AT3G05810 |
| fragaria_vesca | FvH4_6g32060 FvH4_6g32060 FvH4_6g32060 |
| malus_domestica | MD07G1055000.v1.1 MD10G1090000.v1.1 MD15G1427600.v1.1 |
| prunus_persica | Prupe.2G047800_v2.0.a1 Prupe.2G047800_v2.0.a1 Prupe.3G062500_v2.0.a1 Prupe.3G062500_v2.0.a1 Prupe.3G062500_v2.0.a1 |
| pyrus_communis | pycom07g04320 pycom10g07350 |
| rosa_chinensis | RchiOBHm_Chr2g0139741 |
| rosa_laevigata | RLG00000019829 |
| rosa_multiflora | Rmu_sc0000545.1_g000003 |
| rosa_roxburghii | Rroxscaffold_2G00105240 |
| rosa_rugosa | Rorug02G0359500 Rorug02G0359600 |
| rosa_samantha | Rh2AG409300 Rh2BG419700 Rh2CG395600 |
| rosa_wichuraiana | Rw2G033430 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 64, 247 |
| AfaI | GTAC | 1 cut(s) | 27 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 63, 126 |
| AgsI | TTSAA | 3 cut(s) | 94, 124, 145 |
| AjnI | CCWGG | 1 cut(s) | 21 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 137, 169 |
| AluBI | AGCT | 1 cut(s) | 217 |
| AluI | AGCT | 1 cut(s) | 217 |
| AoxI | GGCC | 1 cut(s) | 117 |
| AspS9I | GGNCC | 1 cut(s) | 117 |
| AsuII | TTCGAA | 1 cut(s) | 227 |
| BbsI | GAAGAC | 1 cut(s) | 216 |
| BbvCI | CCTCAGC | 1 cut(s) | 243 |
| BciT130I | CCWGG | 1 cut(s) | 23 |
| BfaI | CTAG | 1 cut(s) | 131 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 247 |
| BisI | GCNGC | 2 cut(s) | 65, 248 |
| BlsI | GCNGC | 2 cut(s) | 66, 249 |
| Bme1390I | CCNGG | 1 cut(s) | 23 |
| BmgT120I | GGNCC | 1 cut(s) | 117 |
| BmiI | GGNNCC | 1 cut(s) | 118 |
| BmrFI | CCNGG | 1 cut(s) | 23 |
| BpiI | GAAGAC | 1 cut(s) | 216 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 143, 175 |
| Bpu10I | CCTNAGC | 1 cut(s) | 243 |
| Bpu14I | TTCGAA | 1 cut(s) | 227 |
| BpuEI | CTTGAG | 1 cut(s) | 284 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 63, 126 |
| Bse118I | RCCGGY | 1 cut(s) | 199 |
| BseBI | CCWGG | 1 cut(s) | 23 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 63, 126 |
| BseMII | CTCAG | 1 cut(s) | 257 |
| BseRI | GAGGAG | 1 cut(s) | 164 |
| BshFI | GGCC | 1 cut(s) | 119 |
| BsiSI | CCGG | 1 cut(s) | 200 |
| BslFI | GGGAC | 1 cut(s) | 149 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 63, 126 |
| BsmFI | GGGAC | 1 cut(s) | 149 |
| BsnI | GGCC | 1 cut(s) | 119 |
| Bsp119I | TTCGAA | 1 cut(s) | 227 |
| BspACI | CCGC | 2 cut(s) | 64, 247 |
| BspANI | GGCC | 1 cut(s) | 119 |
| BspCNI | CTCAG | 1 cut(s) | 256 |
| BspLI | GGNNCC | 1 cut(s) | 118 |
| BspT104I | TTCGAA | 1 cut(s) | 227 |
| BsrFI | RCCGGY | 1 cut(s) | 199 |
| BssAI | RCCGGY | 1 cut(s) | 199 |
| Bst2UI | CCWGG | 1 cut(s) | 23 |
| BstBI | TTCGAA | 1 cut(s) | 227 |
| BstC8I | GCNNGC | 3 cut(s) | 201, 219, 239 |
| BstDEI | CTNAG | 1 cut(s) | 243 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 18, 247 |
| BstNI | CCWGG | 1 cut(s) | 23 |
| BstSCI | CCNGG | 1 cut(s) | 21 |
| BstV2I | GAAGAC | 1 cut(s) | 216 |
| BsuRI | GGCC | 1 cut(s) | 119 |
| Cac8I | GCNNGC | 3 cut(s) | 201, 219, 239 |
| Cfr10I | RCCGGY | 1 cut(s) | 199 |
| Cfr13I | GGNCC | 1 cut(s) | 117 |
| Csp6I | GTAC | 1 cut(s) | 26 |
| CviAII | CATG | 1 cut(s) | 272 |
| CviQI | GTAC | 1 cut(s) | 26 |
| DdeI | CTNAG | 1 cut(s) | 243 |
| EcoO109I | RGGNCCY | 1 cut(s) | 117 |
| EcoRII | CCWGG | 1 cut(s) | 21 |
| FaeI | CATG | 1 cut(s) | 275 |
| FaiI | YATR | 3 cut(s) | 174, 191, 273 |
| FaqI | GGGAC | 1 cut(s) | 149 |
| FatI | CATG | 1 cut(s) | 271 |
| Fnu4HI | GCNGC | 2 cut(s) | 65, 248 |
| Fsp4HI | GCNGC | 2 cut(s) | 65, 248 |
| FspBI | CTAG | 1 cut(s) | 131 |
| GluI | GCNGC | 2 cut(s) | 65, 248 |
| HaeIII | GGCC | 1 cut(s) | 119 |
| HapII | CCGG | 1 cut(s) | 200 |
| Hin1II | CATG | 1 cut(s) | 275 |
| HinfI | GANTC | 3 cut(s) | 158, 164, 176 |
| HpaII | CCGG | 1 cut(s) | 200 |
| Hpy188I | TCNGA | 4 cut(s) | 163, 169, 181, 304 |
| HpyAV | CCTTC | 3 cut(s) | 107, 130, 139 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 18, 247 |
| HpyF3I | CTNAG | 1 cut(s) | 243 |
| Hsp92II | CATG | 1 cut(s) | 275 |
| KroI | GCCGGC | 1 cut(s) | 199 |
| KroNI | GCCGGC | 1 cut(s) | 201 |
| LpnPI | CCDG | 5 cut(s) | 8, 35, 87, 203, 213 |
| MaeI | CTAG | 1 cut(s) | 131 |
| MboII | GAAGA | 2 cut(s) | 221, 273 |
| MluCI | AATT | 2 cut(s) | 89, 230 |
| MlyI | GAGTC | 2 cut(s) | 152, 185 |
| MmeI | TCCRAC | 2 cut(s) | 135, 159 |
| MnlI | CCTC | 4 cut(s) | 54, 142, 252, 261 |
| MroNI | GCCGGC | 1 cut(s) | 199 |
| MspA1I | CMGCKG | 1 cut(s) | 247 |
| MspI | CCGG | 1 cut(s) | 200 |
| MspR9I | CCNGG | 1 cut(s) | 23 |
| MvaI | CCWGG | 1 cut(s) | 23 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 18, 247 |
| NaeI | GCCGGC | 1 cut(s) | 201 |
| NgoMIV | GCCGGC | 1 cut(s) | 199 |
| NlaIII | CATG | 1 cut(s) | 275 |
| NlaIV | GGNNCC | 1 cut(s) | 118 |
| NspV | TTCGAA | 1 cut(s) | 227 |
| PdiI | GCCGGC | 1 cut(s) | 201 |
| PfeI | GAWTC | 1 cut(s) | 164 |
| PkrI | GCNGC | 2 cut(s) | 66, 249 |
| PleI | GAGTC | 2 cut(s) | 152, 184 |
| PpsI | GAGTC | 2 cut(s) | 152, 184 |
| Psp6I | CCWGG | 1 cut(s) | 21 |
| PspGI | CCWGG | 1 cut(s) | 21 |
| PspN4I | GGNNCC | 1 cut(s) | 118 |
| PspPI | GGNCC | 1 cut(s) | 117 |
| RsaI | GTAC | 1 cut(s) | 27 |
| RsaNI | GTAC | 1 cut(s) | 26 |
| SatI | GCNGC | 2 cut(s) | 65, 248 |
| Sau96I | GGNCC | 1 cut(s) | 117 |
| SchI | GAGTC | 2 cut(s) | 152, 185 |
| ScrFI | CCNGG | 1 cut(s) | 23 |
| SetI | ASST | 4 cut(s) | 27, 78, 100, 219 |
| SfuI | TTCGAA | 1 cut(s) | 227 |
| SmlI | CTYRAG | 1 cut(s) | 263 |
| SmoI | CTYRAG | 1 cut(s) | 263 |
| Sse9I | AATT | 2 cut(s) | 89, 230 |
| SsiI | CCGC | 2 cut(s) | 64, 247 |
| SspMI | CTAG | 1 cut(s) | 131 |
| StyD4I | CCNGG | 1 cut(s) | 21 |
| TaqI | TCGA | 1 cut(s) | 227 |
| TasI | AATT | 2 cut(s) | 89, 230 |
| TauI | GCSGC | 2 cut(s) | 67, 250 |
| TfiI | GAWTC | 1 cut(s) | 164 |
| TspDTI | ATGAA | 2 cut(s) | 222, 287 |
| XspI | CTAG | 1 cut(s) | 131 |